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#ifndef seq_h
#define seq_h
struct ORFData;
struct SeqData
{
const char *Label;
const byte *Seq;
unsigned L;
unsigned Index;
// RevComp means that SeqData.Seq is reverse-complemented relative
// to the sequence in the input file (query or db). Coordinates in
// a hit (e.g., AlnData) will be relative to SeqData.Seq, so both
// the sequence and the coordinates should be r.c.'d for output.
bool RevComp;
bool Nucleo;
const ORFData *ORFParent;
SeqData()
{
Clear();
}
void Clear()
{
Label = 0;
Seq = 0;
L = 0;
Index = UINT_MAX;
RevComp = false;
Nucleo = false;
ORFParent = 0;
}
};
#endif // seq_h
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