1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231 232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247 248 249 250 251 252 253 254 255 256 257 258 259 260 261 262 263 264 265 266 267 268 269 270 271 272 273 274 275 276 277 278 279 280 281 282 283 284 285 286 287 288 289 290 291 292 293 294 295 296 297 298 299 300 301 302 303 304 305 306 307 308 309 310 311 312 313 314 315 316 317 318 319 320 321 322 323 324 325 326 327 328 329 330 331 332 333 334 335 336 337 338 339 340 341 342 343 344 345 346 347 348 349 350 351 352 353 354 355 356 357 358 359 360 361 362 363 364 365 366 367 368 369 370 371 372 373 374 375 376 377 378 379 380 381 382 383 384 385 386 387 388 389 390 391 392 393 394 395 396 397 398 399 400 401 402 403 404 405 406 407 408 409 410 411 412 413 414 415 416 417 418 419 420 421 422 423 424 425 426 427 428 429 430 431 432 433 434 435 436 437 438 439 440 441 442 443 444 445 446 447 448 449 450 451 452 453 454 455 456 457 458 459 460 461 462 463 464 465 466 467 468 469 470 471 472 473 474 475 476 477 478 479 480 481 482 483 484 485 486 487 488 489 490 491 492 493 494 495 496 497 498 499 500 501 502 503 504 505 506 507 508 509 510 511 512 513 514 515 516 517 518 519 520 521 522 523 524 525 526 527 528 529 530 531 532 533 534 535 536 537 538 539 540 541 542 543 544 545 546 547 548 549 550 551 552 553 554 555 556 557 558 559 560 561 562 563 564 565 566 567 568 569 570 571 572 573 574 575 576 577 578 579 580 581 582 583 584 585 586 587 588 589 590 591 592 593 594 595 596 597 598 599 600 601 602 603 604 605 606 607 608 609 610 611 612 613 614 615 616 617 618 619 620 621 622 623 624 625 626 627 628 629 630 631 632 633 634 635 636 637 638 639 640 641 642 643 644 645 646 647 648 649 650 651 652 653 654 655 656 657 658 659 660 661 662 663 664 665 666 667 668 669 670 671 672 673 674 675 676 677 678 679 680 681 682 683 684 685 686 687 688 689 690 691 692 693 694 695 696 697 698 699 700 701 702 703 704 705 706 707 708 709 710 711 712 713 714 715 716 717 718 719 720 721 722 723 724 725 726 727 728 729 730 731 732 733 734 735 736 737 738 739 740 741 742 743 744 745 746 747 748 749 750 751 752 753 754 755 756 757 758 759 760 761 762 763 764 765 766 767 768 769 770 771 772 773 774 775 776 777 778 779 780 781 782 783 784 785 786 787 788 789 790 791 792 793 794 795 796 797 798 799 800 801 802 803 804 805 806 807 808 809 810 811 812 813 814 815 816 817 818 819 820 821 822 823 824 825 826 827 828 829 830 831 832 833 834 835 836 837 838 839 840 841 842 843 844 845 846 847 848 849 850 851 852 853 854 855 856 857 858 859 860 861 862 863 864 865 866 867 868 869 870 871 872 873 874 875 876 877 878 879 880 881 882 883 884 885 886 887 888 889 890 891 892 893 894 895 896 897 898 899 900 901 902 903 904 905 906 907 908 909 910 911 912 913 914 915 916 917 918 919 920 921 922 923 924 925 926 927 928 929 930 931 932 933 934 935 936 937 938 939 940 941 942 943 944 945 946 947 948 949 950 951 952 953 954 955 956 957 958 959 960 961 962 963 964 965 966 967 968 969 970 971 972 973 974 975 976 977 978 979 980 981 982 983 984 985 986 987 988 989 990 991 992 993 994 995 996 997 998 999 1000 1001 1002 1003 1004 1005 1006 1007 1008 1009 1010 1011 1012 1013 1014 1015 1016 1017 1018 1019 1020 1021 1022 1023 1024 1025 1026 1027 1028 1029 1030 1031 1032 1033 1034 1035 1036 1037 1038 1039 1040 1041 1042 1043 1044 1045 1046 1047 1048 1049 1050 1051 1052 1053 1054 1055 1056 1057 1058 1059 1060 1061 1062 1063 1064 1065 1066 1067 1068 1069 1070 1071 1072 1073 1074 1075 1076 1077 1078 1079 1080 1081 1082 1083 1084 1085 1086 1087 1088 1089 1090 1091 1092 1093 1094 1095 1096 1097 1098 1099 1100 1101 1102 1103 1104 1105 1106 1107 1108 1109 1110 1111 1112 1113 1114 1115 1116 1117 1118 1119 1120 1121 1122 1123 1124 1125 1126 1127 1128 1129 1130 1131 1132 1133 1134 1135 1136 1137 1138 1139 1140 1141 1142 1143 1144 1145 1146 1147 1148 1149 1150 1151 1152 1153 1154 1155 1156 1157 1158 1159 1160 1161 1162 1163 1164 1165 1166 1167 1168 1169 1170 1171 1172 1173 1174 1175 1176 1177 1178 1179 1180 1181 1182 1183 1184 1185 1186 1187 1188 1189 1190 1191 1192 1193 1194 1195 1196 1197 1198 1199 1200 1201 1202 1203 1204 1205 1206 1207 1208 1209 1210 1211 1212 1213 1214 1215 1216 1217 1218 1219 1220 1221 1222 1223 1224 1225 1226 1227 1228 1229 1230 1231 1232 1233 1234 1235 1236 1237 1238 1239 1240 1241 1242 1243 1244 1245 1246 1247 1248 1249 1250 1251 1252 1253 1254 1255 1256 1257 1258 1259 1260 1261 1262 1263 1264 1265 1266 1267 1268 1269 1270 1271 1272 1273 1274 1275 1276 1277 1278 1279 1280 1281 1282 1283 1284 1285 1286 1287 1288 1289 1290 1291 1292 1293 1294 1295 1296 1297 1298 1299 1300 1301 1302 1303 1304 1305 1306 1307 1308 1309 1310 1311 1312 1313 1314 1315 1316 1317 1318 1319 1320 1321 1322 1323 1324 1325 1326 1327 1328 1329 1330 1331 1332 1333 1334 1335 1336 1337 1338 1339 1340 1341 1342 1343 1344 1345 1346 1347 1348 1349 1350 1351 1352 1353 1354 1355 1356 1357 1358 1359 1360 1361 1362 1363 1364 1365 1366 1367 1368 1369 1370 1371 1372 1373 1374 1375 1376 1377 1378 1379 1380 1381 1382 1383 1384 1385 1386 1387 1388 1389 1390 1391 1392 1393 1394 1395 1396 1397 1398 1399 1400 1401 1402 1403 1404 1405 1406 1407 1408 1409 1410 1411 1412 1413 1414 1415 1416 1417 1418 1419 1420 1421 1422 1423 1424 1425 1426 1427 1428 1429 1430 1431 1432 1433 1434 1435 1436 1437 1438 1439 1440 1441 1442 1443 1444 1445 1446 1447 1448 1449 1450 1451 1452 1453 1454 1455 1456 1457 1458 1459 1460 1461 1462 1463 1464 1465 1466 1467 1468 1469 1470 1471 1472 1473 1474 1475 1476 1477 1478 1479 1480 1481 1482 1483 1484 1485 1486 1487 1488 1489 1490 1491 1492 1493 1494 1495 1496 1497 1498 1499 1500 1501 1502 1503 1504 1505 1506 1507 1508 1509 1510 1511 1512 1513 1514 1515 1516 1517 1518 1519 1520 1521 1522 1523 1524 1525 1526 1527 1528 1529 1530 1531 1532 1533 1534 1535 1536 1537 1538 1539 1540 1541 1542 1543 1544 1545 1546 1547 1548 1549 1550 1551 1552 1553 1554 1555 1556 1557 1558 1559 1560 1561 1562 1563 1564 1565 1566 1567 1568 1569 1570 1571 1572 1573 1574 1575 1576 1577 1578 1579 1580 1581 1582 1583 1584 1585 1586 1587 1588 1589 1590 1591 1592 1593 1594 1595 1596 1597 1598 1599 1600 1601 1602 1603 1604 1605 1606 1607 1608 1609 1610 1611 1612 1613 1614 1615 1616 1617 1618 1619 1620 1621 1622 1623 1624 1625 1626 1627 1628 1629 1630 1631 1632 1633 1634 1635 1636 1637 1638 1639 1640 1641 1642 1643 1644 1645 1646 1647 1648 1649 1650 1651 1652 1653 1654 1655 1656 1657 1658 1659 1660 1661 1662 1663 1664 1665 1666 1667 1668 1669 1670 1671 1672 1673 1674 1675 1676 1677 1678 1679 1680 1681 1682 1683 1684 1685 1686 1687 1688 1689 1690 1691 1692 1693 1694 1695 1696 1697 1698 1699 1700 1701 1702 1703 1704 1705 1706 1707 1708 1709 1710 1711 1712 1713 1714 1715 1716 1717 1718 1719 1720 1721 1722 1723 1724 1725 1726 1727 1728 1729 1730 1731 1732 1733 1734 1735 1736 1737 1738 1739 1740 1741 1742 1743 1744 1745 1746 1747 1748 1749 1750 1751 1752 1753 1754 1755 1756 1757 1758 1759 1760 1761 1762 1763 1764 1765 1766 1767 1768 1769 1770 1771 1772 1773 1774 1775 1776 1777 1778 1779 1780 1781 1782 1783 1784 1785 1786 1787 1788 1789 1790 1791 1792 1793 1794 1795 1796 1797 1798 1799 1800 1801 1802 1803 1804 1805 1806 1807 1808 1809 1810 1811 1812 1813 1814 1815 1816 1817 1818 1819 1820 1821 1822 1823 1824 1825 1826 1827 1828 1829 1830 1831 1832 1833 1834 1835 1836 1837 1838 1839 1840 1841 1842 1843 1844 1845 1846 1847 1848 1849 1850 1851 1852 1853 1854 1855 1856 1857 1858 1859 1860 1861 1862 1863 1864 1865 1866 1867 1868 1869 1870 1871 1872 1873 1874 1875 1876 1877 1878 1879 1880 1881 1882 1883 1884 1885 1886 1887 1888 1889 1890 1891 1892 1893 1894 1895 1896 1897 1898 1899 1900 1901 1902 1903 1904 1905 1906 1907 1908 1909 1910 1911 1912 1913 1914 1915 1916 1917 1918 1919 1920 1921 1922 1923 1924 1925 1926 1927 1928 1929 1930 1931 1932 1933 1934 1935 1936 1937 1938 1939 1940 1941 1942 1943 1944 1945 1946 1947 1948 1949 1950 1951 1952 1953 1954 1955 1956 1957 1958 1959 1960 1961 1962 1963 1964 1965 1966 1967 1968 1969 1970 1971 1972 1973 1974 1975 1976 1977 1978 1979 1980 1981 1982 1983 1984 1985 1986 1987 1988 1989 1990 1991 1992 1993 1994 1995 1996 1997 1998 1999 2000 2001 2002 2003 2004 2005 2006 2007 2008 2009 2010 2011 2012 2013 2014 2015 2016 2017 2018 2019 2020 2021 2022 2023 2024 2025 2026 2027 2028 2029 2030 2031 2032 2033 2034 2035 2036 2037 2038 2039 2040 2041 2042 2043 2044 2045 2046 2047 2048 2049 2050 2051 2052 2053 2054 2055 2056 2057 2058 2059 2060 2061 2062 2063 2064 2065 2066 2067 2068 2069 2070 2071 2072 2073 2074 2075 2076 2077 2078 2079 2080 2081 2082 2083 2084 2085 2086 2087 2088 2089 2090 2091 2092 2093 2094 2095 2096 2097 2098 2099 2100 2101 2102 2103 2104 2105 2106 2107 2108 2109 2110 2111 2112 2113 2114 2115 2116 2117 2118 2119 2120 2121 2122 2123 2124 2125 2126 2127 2128 2129 2130 2131 2132 2133 2134 2135 2136 2137 2138 2139 2140 2141 2142 2143 2144 2145 2146 2147 2148 2149 2150 2151 2152 2153 2154 2155 2156 2157 2158 2159 2160 2161 2162 2163 2164 2165 2166 2167 2168 2169 2170 2171 2172 2173 2174 2175 2176 2177 2178 2179 2180 2181 2182 2183 2184 2185 2186 2187 2188 2189 2190 2191 2192 2193 2194 2195 2196 2197 2198 2199 2200 2201 2202 2203 2204 2205 2206 2207 2208 2209 2210 2211 2212 2213 2214 2215 2216 2217 2218 2219 2220 2221 2222 2223 2224 2225 2226 2227 2228 2229 2230 2231 2232 2233 2234 2235 2236 2237 2238 2239 2240 2241 2242 2243 2244 2245 2246 2247 2248 2249 2250 2251 2252 2253 2254 2255 2256 2257 2258 2259 2260 2261 2262 2263 2264 2265 2266 2267 2268 2269 2270 2271 2272 2273 2274 2275 2276 2277 2278 2279 2280 2281 2282 2283 2284 2285 2286 2287 2288 2289 2290 2291 2292 2293 2294 2295 2296 2297 2298 2299 2300 2301 2302 2303 2304 2305 2306 2307 2308 2309 2310 2311 2312 2313 2314 2315 2316 2317 2318 2319 2320 2321 2322 2323 2324 2325 2326 2327 2328 2329 2330 2331 2332 2333 2334 2335 2336 2337 2338 2339 2340 2341 2342 2343 2344 2345 2346 2347 2348 2349 2350 2351 2352 2353 2354 2355 2356 2357 2358 2359 2360 2361 2362 2363 2364 2365 2366 2367 2368 2369 2370 2371 2372 2373 2374 2375 2376 2377 2378 2379 2380 2381 2382 2383 2384 2385 2386 2387 2388 2389 2390 2391 2392 2393 2394 2395 2396 2397 2398 2399 2400 2401 2402 2403 2404 2405 2406 2407 2408 2409 2410 2411 2412 2413 2414 2415 2416 2417 2418 2419 2420 2421 2422 2423 2424 2425 2426 2427 2428 2429 2430 2431 2432 2433 2434 2435 2436 2437 2438 2439 2440 2441 2442 2443 2444 2445 2446 2447 2448 2449 2450 2451 2452 2453 2454 2455 2456 2457 2458 2459 2460 2461 2462 2463 2464 2465 2466 2467 2468 2469 2470 2471 2472 2473 2474 2475 2476 2477 2478 2479 2480 2481 2482 2483 2484 2485 2486 2487 2488 2489 2490 2491 2492 2493 2494 2495 2496 2497 2498 2499 2500 2501 2502 2503 2504 2505 2506 2507 2508 2509 2510 2511 2512 2513 2514 2515 2516 2517 2518 2519 2520 2521 2522 2523 2524 2525 2526 2527 2528 2529 2530 2531 2532 2533 2534 2535 2536 2537 2538 2539 2540 2541 2542 2543 2544 2545 2546 2547 2548 2549 2550 2551 2552 2553 2554 2555 2556 2557 2558 2559 2560 2561 2562 2563 2564 2565 2566 2567 2568 2569 2570 2571 2572 2573 2574 2575 2576 2577 2578 2579 2580 2581 2582 2583 2584 2585 2586 2587 2588 2589 2590 2591 2592 2593 2594 2595 2596 2597 2598 2599 2600 2601 2602 2603 2604 2605 2606 2607 2608 2609 2610 2611 2612 2613 2614 2615 2616 2617 2618 2619 2620 2621 2622 2623 2624 2625 2626 2627 2628 2629 2630 2631 2632 2633 2634 2635 2636 2637 2638 2639 2640 2641 2642 2643 2644 2645 2646 2647 2648 2649 2650 2651 2652 2653 2654 2655 2656 2657 2658 2659 2660 2661 2662 2663 2664 2665 2666 2667 2668 2669 2670 2671 2672 2673 2674 2675 2676 2677 2678 2679 2680 2681 2682 2683 2684 2685 2686 2687 2688 2689 2690 2691 2692 2693 2694 2695 2696 2697 2698 2699 2700 2701 2702 2703 2704 2705 2706 2707 2708 2709 2710 2711 2712 2713 2714 2715 2716 2717 2718 2719 2720 2721 2722 2723 2724 2725 2726 2727 2728 2729 2730 2731 2732 2733 2734 2735 2736 2737 2738 2739 2740 2741 2742 2743 2744 2745 2746 2747 2748 2749 2750 2751 2752 2753 2754 2755 2756 2757 2758 2759 2760 2761 2762 2763 2764 2765 2766 2767 2768 2769 2770 2771 2772 2773 2774 2775 2776 2777 2778 2779 2780 2781 2782 2783 2784 2785 2786 2787 2788 2789 2790 2791 2792 2793 2794 2795 2796 2797 2798 2799 2800 2801 2802 2803 2804 2805 2806 2807 2808 2809 2810 2811 2812 2813 2814 2815 2816 2817 2818 2819 2820 2821 2822 2823 2824 2825 2826 2827 2828 2829 2830 2831 2832 2833 2834 2835 2836 2837 2838 2839 2840 2841 2842 2843 2844 2845 2846 2847 2848 2849 2850 2851 2852 2853 2854 2855 2856 2857 2858 2859 2860 2861 2862 2863 2864 2865 2866 2867 2868 2869 2870 2871 2872 2873 2874 2875 2876 2877 2878 2879 2880 2881 2882 2883 2884 2885 2886 2887 2888 2889 2890 2891 2892 2893 2894 2895 2896 2897 2898 2899 2900 2901 2902 2903 2904 2905 2906 2907 2908 2909 2910 2911 2912 2913 2914 2915 2916 2917 2918 2919 2920 2921 2922 2923 2924 2925 2926 2927 2928 2929 2930 2931 2932 2933 2934 2935 2936 2937 2938 2939 2940 2941 2942 2943 2944 2945 2946 2947 2948 2949 2950 2951 2952 2953 2954 2955 2956 2957 2958 2959 2960 2961 2962 2963 2964 2965 2966 2967 2968 2969 2970 2971 2972 2973 2974 2975 2976 2977 2978 2979 2980 2981 2982 2983 2984 2985 2986 2987 2988 2989 2990 2991 2992 2993 2994 2995 2996 2997 2998 2999 3000 3001 3002 3003 3004 3005 3006 3007 3008 3009 3010 3011 3012 3013 3014 3015 3016 3017 3018 3019 3020 3021 3022 3023 3024 3025 3026 3027 3028 3029 3030 3031 3032 3033 3034 3035 3036 3037 3038 3039 3040 3041 3042 3043 3044 3045 3046 3047 3048 3049 3050 3051 3052 3053 3054 3055 3056 3057 3058 3059 3060 3061 3062 3063 3064 3065 3066 3067 3068 3069 3070 3071 3072 3073 3074 3075 3076 3077 3078 3079 3080 3081 3082 3083 3084 3085 3086 3087 3088 3089 3090 3091 3092 3093 3094 3095 3096 3097 3098 3099 3100 3101 3102 3103 3104 3105 3106 3107 3108 3109 3110 3111 3112 3113 3114 3115 3116 3117 3118 3119 3120 3121 3122 3123 3124 3125 3126 3127 3128 3129 3130 3131 3132 3133 3134 3135 3136 3137 3138 3139 3140 3141 3142 3143 3144 3145 3146 3147 3148 3149 3150 3151 3152 3153 3154 3155 3156 3157 3158 3159 3160 3161 3162 3163 3164 3165 3166 3167 3168 3169 3170 3171 3172 3173 3174 3175 3176 3177 3178 3179 3180 3181 3182 3183 3184 3185 3186 3187 3188 3189 3190 3191 3192 3193 3194 3195 3196 3197 3198 3199 3200 3201 3202 3203 3204 3205 3206 3207 3208 3209 3210 3211 3212 3213 3214 3215 3216 3217 3218 3219 3220 3221 3222 3223 3224 3225 3226 3227 3228 3229 3230 3231 3232 3233 3234 3235 3236 3237 3238 3239 3240 3241 3242 3243 3244 3245 3246 3247 3248 3249 3250 3251 3252 3253 3254 3255 3256 3257 3258 3259 3260 3261 3262 3263 3264 3265 3266 3267 3268 3269 3270 3271 3272 3273 3274 3275 3276 3277 3278 3279 3280 3281 3282 3283 3284 3285 3286 3287 3288 3289 3290 3291 3292 3293 3294 3295 3296 3297 3298 3299 3300 3301 3302 3303 3304 3305 3306 3307 3308 3309 3310 3311 3312 3313 3314 3315 3316 3317 3318 3319 3320 3321 3322 3323 3324 3325 3326 3327 3328 3329 3330 3331 3332 3333 3334 3335 3336 3337 3338 3339 3340 3341 3342 3343 3344 3345 3346 3347 3348 3349 3350 3351 3352 3353 3354 3355 3356 3357 3358 3359 3360 3361 3362 3363 3364 3365 3366 3367 3368 3369 3370 3371 3372 3373 3374 3375 3376 3377 3378 3379 3380 3381 3382 3383 3384 3385 3386 3387 3388 3389 3390 3391 3392 3393 3394 3395 3396 3397 3398 3399 3400 3401 3402 3403 3404 3405 3406 3407 3408 3409 3410 3411 3412 3413 3414 3415 3416 3417 3418 3419 3420 3421 3422 3423 3424 3425 3426 3427 3428 3429 3430 3431 3432 3433 3434 3435 3436 3437 3438 3439 3440 3441 3442 3443 3444 3445 3446 3447 3448 3449 3450 3451 3452 3453 3454 3455 3456 3457 3458 3459 3460 3461 3462 3463 3464 3465 3466 3467 3468 3469 3470 3471 3472 3473 3474 3475 3476 3477 3478 3479 3480 3481 3482 3483 3484 3485 3486 3487 3488 3489 3490 3491 3492 3493 3494 3495 3496 3497 3498 3499 3500 3501 3502 3503 3504 3505 3506 3507 3508 3509 3510 3511 3512 3513 3514 3515 3516 3517 3518 3519 3520 3521 3522 3523 3524 3525 3526 3527 3528 3529 3530 3531 3532 3533 3534 3535 3536 3537 3538 3539 3540 3541 3542 3543 3544 3545 3546 3547 3548 3549 3550 3551 3552 3553 3554 3555 3556 3557 3558 3559 3560 3561 3562 3563 3564 3565 3566 3567 3568 3569 3570 3571 3572 3573 3574 3575 3576 3577 3578 3579 3580 3581 3582 3583 3584 3585 3586 3587 3588 3589 3590 3591 3592 3593 3594 3595 3596 3597 3598 3599 3600 3601 3602 3603 3604 3605 3606 3607 3608 3609 3610 3611 3612 3613 3614 3615 3616 3617 3618 3619 3620 3621 3622 3623 3624 3625 3626 3627 3628 3629 3630 3631 3632 3633 3634 3635 3636 3637 3638 3639 3640 3641 3642 3643 3644 3645 3646 3647 3648 3649 3650 3651 3652 3653 3654 3655 3656 3657 3658 3659 3660 3661 3662 3663 3664 3665 3666 3667 3668 3669 3670 3671 3672 3673 3674 3675 3676 3677 3678 3679 3680 3681 3682 3683 3684 3685 3686 3687 3688 3689 3690 3691 3692 3693 3694 3695 3696 3697 3698 3699 3700 3701 3702 3703 3704 3705 3706 3707 3708 3709 3710 3711 3712 3713 3714 3715 3716 3717 3718 3719 3720 3721 3722 3723 3724 3725 3726 3727 3728 3729 3730 3731 3732 3733 3734 3735 3736 3737 3738 3739 3740 3741 3742 3743 3744 3745 3746 3747 3748 3749 3750 3751 3752 3753 3754 3755 3756 3757 3758 3759 3760 3761 3762 3763 3764 3765 3766 3767 3768 3769 3770 3771 3772 3773 3774 3775 3776 3777 3778 3779 3780 3781 3782 3783 3784 3785 3786 3787 3788 3789 3790 3791 3792 3793 3794 3795 3796 3797 3798 3799 3800 3801 3802 3803 3804 3805 3806 3807 3808 3809 3810 3811 3812 3813 3814 3815 3816 3817 3818 3819 3820 3821 3822 3823 3824 3825 3826 3827 3828 3829 3830 3831 3832 3833 3834 3835 3836 3837 3838 3839 3840 3841 3842 3843 3844 3845 3846 3847 3848 3849 3850 3851 3852 3853 3854 3855 3856 3857 3858 3859 3860 3861 3862 3863 3864 3865 3866 3867 3868 3869 3870 3871 3872 3873 3874 3875 3876 3877 3878 3879 3880 3881 3882 3883 3884 3885 3886 3887 3888 3889 3890 3891 3892 3893 3894 3895 3896 3897 3898 3899 3900 3901 3902 3903 3904 3905 3906 3907 3908 3909 3910 3911 3912 3913 3914 3915 3916 3917 3918 3919 3920 3921 3922 3923 3924 3925 3926 3927 3928 3929 3930 3931 3932 3933 3934 3935 3936 3937 3938 3939 3940 3941 3942 3943 3944 3945 3946 3947 3948 3949 3950 3951 3952 3953 3954 3955 3956 3957 3958 3959 3960 3961 3962 3963 3964 3965 3966 3967 3968 3969 3970 3971 3972 3973 3974 3975 3976 3977 3978 3979 3980 3981 3982 3983 3984 3985 3986 3987 3988 3989 3990 3991 3992 3993 3994 3995 3996 3997 3998 3999 4000 4001 4002 4003 4004 4005 4006 4007 4008 4009 4010 4011 4012 4013 4014 4015 4016 4017 4018 4019 4020 4021 4022 4023 4024 4025 4026 4027 4028 4029 4030 4031 4032 4033 4034 4035 4036 4037 4038 4039 4040 4041 4042 4043 4044 4045 4046 4047 4048 4049 4050 4051 4052 4053 4054 4055 4056 4057 4058 4059 4060 4061 4062 4063 4064 4065 4066 4067 4068 4069 4070 4071 4072 4073 4074 4075 4076 4077 4078 4079 4080 4081 4082 4083 4084 4085 4086 4087 4088 4089 4090 4091 4092 4093 4094 4095 4096 4097 4098 4099 4100 4101 4102 4103 4104 4105 4106 4107 4108 4109 4110 4111 4112 4113 4114 4115 4116 4117 4118 4119 4120 4121 4122 4123 4124 4125 4126 4127 4128 4129 4130 4131 4132 4133 4134 4135 4136 4137 4138 4139 4140 4141 4142 4143 4144 4145 4146 4147 4148 4149 4150 4151 4152 4153 4154 4155 4156 4157 4158 4159 4160 4161 4162 4163 4164 4165 4166 4167 4168 4169 4170 4171 4172 4173 4174 4175 4176 4177 4178 4179 4180 4181 4182 4183 4184 4185 4186 4187 4188 4189 4190 4191 4192 4193 4194 4195 4196 4197 4198 4199 4200 4201 4202 4203 4204 4205 4206 4207 4208 4209 4210 4211 4212 4213 4214 4215 4216 4217 4218 4219 4220 4221 4222 4223 4224 4225 4226 4227 4228 4229 4230 4231 4232 4233 4234 4235 4236 4237 4238 4239 4240 4241 4242 4243 4244 4245 4246 4247 4248 4249 4250 4251 4252 4253 4254 4255 4256 4257 4258 4259 4260 4261 4262 4263 4264 4265 4266 4267 4268 4269 4270 4271 4272 4273 4274 4275 4276 4277 4278 4279 4280 4281 4282 4283 4284 4285 4286 4287 4288 4289 4290 4291 4292 4293 4294 4295 4296 4297 4298 4299 4300 4301 4302 4303 4304 4305 4306 4307 4308 4309 4310 4311 4312 4313 4314 4315 4316 4317 4318 4319 4320 4321 4322 4323 4324 4325 4326 4327 4328 4329 4330 4331 4332 4333 4334 4335 4336 4337 4338 4339 4340 4341 4342 4343 4344 4345 4346 4347 4348 4349 4350 4351 4352 4353 4354 4355 4356 4357 4358 4359 4360 4361 4362 4363 4364 4365 4366 4367 4368 4369 4370 4371 4372 4373 4374 4375 4376 4377 4378 4379 4380 4381 4382
|
// !$*UTF8*$!
{
archiveVersion = 1;
classes = {
};
objectVersion = 46;
objects = {
/* Begin PBXBuildFile section */
219C1DE01552C4BD004209F9 /* newcommandtemplate.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 219C1DDF1552C4BD004209F9 /* newcommandtemplate.cpp */; };
219C1DE41559BCCF004209F9 /* getcoremicrobiomecommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 219C1DE31559BCCD004209F9 /* getcoremicrobiomecommand.cpp */; };
4803D5AD211CA67F001C63B5 /* testsharedrabundvector.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 4803D5AB211CA67F001C63B5 /* testsharedrabundvector.cpp */; };
4803D5B0211CD839001C63B5 /* testsharedrabundfloatvector.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 4803D5AE211CD839001C63B5 /* testsharedrabundfloatvector.cpp */; };
4803D5B3211DDA5A001C63B5 /* testsharedrabundvectors.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 4803D5B1211DDA5A001C63B5 /* testsharedrabundvectors.cpp */; };
4803D5B621231D9D001C63B5 /* testsharedrabundfloatvectors.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 4803D5B421231D9D001C63B5 /* testsharedrabundfloatvectors.cpp */; };
48098ED6219DE7A500031FA4 /* testsubsample.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 48098ED4219DE7A500031FA4 /* testsubsample.cpp */; };
4809EC95227B3A5B00B4D0E5 /* metrolognormal.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 48E7E0A12278A21B00B74910 /* metrolognormal.cpp */; };
4809EC98227B405700B4D0E5 /* metrologstudent.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 4809EC96227B405700B4D0E5 /* metrologstudent.cpp */; };
4809EC99227B405700B4D0E5 /* metrologstudent.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 4809EC96227B405700B4D0E5 /* metrologstudent.cpp */; };
4809EC9D227C9B3100B4D0E5 /* metrosichel.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 4809EC9B227C9B3100B4D0E5 /* metrosichel.cpp */; };
4809EC9E227C9B3100B4D0E5 /* metrosichel.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 4809EC9B227C9B3100B4D0E5 /* metrosichel.cpp */; };
4809ECA12280898E00B4D0E5 /* igrarefaction.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 4809EC9F2280898E00B4D0E5 /* igrarefaction.cpp */; };
4809ECA22280898E00B4D0E5 /* igrarefaction.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 4809EC9F2280898E00B4D0E5 /* igrarefaction.cpp */; };
4809ECA522831A5E00B4D0E5 /* lnabundance.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 4809ECA322831A5E00B4D0E5 /* lnabundance.cpp */; };
4809ECA622831A5E00B4D0E5 /* lnabundance.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 4809ECA322831A5E00B4D0E5 /* lnabundance.cpp */; };
480D1E2A1EA681D100BF9C77 /* testclustercalcs.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 480D1E281EA681D100BF9C77 /* testclustercalcs.cpp */; };
480D1E311EA92D5500BF9C77 /* fakeoptimatrix.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 480D1E2F1EA92D5500BF9C77 /* fakeoptimatrix.cpp */; };
480E8DB11CAB12ED00A0D137 /* testfastqread.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 480E8DAF1CAB12ED00A0D137 /* testfastqread.cpp */; };
480E8DB21CAB1F5E00A0D137 /* vsearchfileparser.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 489B55701BCD7F0100FB7DC8 /* vsearchfileparser.cpp */; };
4810D5B7218208CC00C668E8 /* testcounttable.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 4810D5B5218208CC00C668E8 /* testcounttable.cpp */; };
4815BEB12289E13500677EE2 /* lnrarefaction.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 4815BEAF2289E13500677EE2 /* lnrarefaction.cpp */; };
4815BEB4228B371E00677EE2 /* lnshift.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 4815BEB2228B371E00677EE2 /* lnshift.cpp */; };
4815BEB5228B371E00677EE2 /* lnshift.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 4815BEB2228B371E00677EE2 /* lnshift.cpp */; };
4815BEB8228DD18400677EE2 /* lsabundance.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 4815BEB6228DD18400677EE2 /* lsabundance.cpp */; };
4815BEB9228DD18400677EE2 /* lsabundance.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 4815BEB6228DD18400677EE2 /* lsabundance.cpp */; };
4815BEBC2293189600677EE2 /* lsrarefaction.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 4815BEBA2293189600677EE2 /* lsrarefaction.cpp */; };
4815BEBD2293189600677EE2 /* lsrarefaction.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 4815BEBA2293189600677EE2 /* lsrarefaction.cpp */; };
4815BEBE2295A02800677EE2 /* diversityutils.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 48E7E0A42278AD4800B74910 /* diversityutils.cpp */; };
4815BEC12295CE6800677EE2 /* siabundance.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 4815BEBF2295CE6800677EE2 /* siabundance.cpp */; };
4815BEC22295CE6800677EE2 /* siabundance.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 4815BEBF2295CE6800677EE2 /* siabundance.cpp */; };
4815BEC52296F19500677EE2 /* sirarefaction.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 4815BEC32296F19500677EE2 /* sirarefaction.cpp */; };
4815BEC62296F19500677EE2 /* sirarefaction.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 4815BEC32296F19500677EE2 /* sirarefaction.cpp */; };
4815BEC922970FA700677EE2 /* sishift.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 4815BEC722970FA700677EE2 /* sishift.cpp */; };
4815BECA22970FA700677EE2 /* sishift.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 4815BEC722970FA700677EE2 /* sishift.cpp */; };
481623E21B56A2DB004C60B7 /* pcrseqscommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 481623E11B56A2DB004C60B7 /* pcrseqscommand.cpp */; };
481E40DB244DFF5A0059C925 /* onegapignore.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 481E40DA244DFF5A0059C925 /* onegapignore.cpp */; };
481E40DD244F52460059C925 /* ignoregaps.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 481E40DC244F52460059C925 /* ignoregaps.cpp */; };
481E40DF244F619D0059C925 /* eachgapignore.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 481E40DE244F619D0059C925 /* eachgapignore.cpp */; };
481E40E1244F62980059C925 /* calculator.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 481E40E0244F62980059C925 /* calculator.cpp */; };
481E40E3244F6A050059C925 /* eachgapdist.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 481E40E2244F6A050059C925 /* eachgapdist.cpp */; };
481FB51C1AC0A63E0076CFF3 /* main.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 481FB51B1AC0A63E0076CFF3 /* main.cpp */; };
481FB5261AC0ADA00076CFF3 /* sequence.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B7DB12D37EC400DA6239 /* sequence.cpp */; };
481FB5271AC0ADBA0076CFF3 /* mothurout.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B75D12D37EC400DA6239 /* mothurout.cpp */; };
481FB52A1AC19F8B0076CFF3 /* setseedcommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 481FB5281AC19F8B0076CFF3 /* setseedcommand.cpp */; };
481FB52B1AC1B09F0076CFF3 /* setseedcommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 481FB5281AC19F8B0076CFF3 /* setseedcommand.cpp */; };
481FB52C1AC1B0A70076CFF3 /* commandfactory.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B6AF12D37EC400DA6239 /* commandfactory.cpp */; };
481FB52E1AC1B0CB0076CFF3 /* testsetseedcommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 481FB52D1AC1B0CB0076CFF3 /* testsetseedcommand.cpp */; };
481FB5301AC1B5C80076CFF3 /* calcsparcc.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A77B7189173D40E4002163C2 /* calcsparcc.cpp */; };
481FB5311AC1B5CD0076CFF3 /* clearcut.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B69412D37EC400DA6239 /* clearcut.cpp */; };
481FB5321AC1B5D00076CFF3 /* cmdargs.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B6A412D37EC400DA6239 /* cmdargs.cpp */; };
481FB5331AC1B5D30076CFF3 /* distclearcut.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B6CF12D37EC400DA6239 /* distclearcut.cpp */; };
481FB5341AC1B5D60076CFF3 /* dmat.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B6D312D37EC400DA6239 /* dmat.cpp */; };
481FB5351AC1B5D90076CFF3 /* fasta.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B6DC12D37EC400DA6239 /* fasta.cpp */; };
481FB5361AC1B5DC0076CFF3 /* getopt_long.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B6FC12D37EC400DA6239 /* getopt_long.cpp */; };
481FB5371AC1B5E00076CFF3 /* cluster.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B69812D37EC400DA6239 /* cluster.cpp */; };
481FB5381AC1B5E30076CFF3 /* clusterclassic.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B69A12D37EC400DA6239 /* clusterclassic.cpp */; };
481FB5391AC1B5E90076CFF3 /* ace.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B64F12D37EC300DA6239 /* ace.cpp */; };
481FB53A1AC1B5EC0076CFF3 /* bergerparker.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B65E12D37EC300DA6239 /* bergerparker.cpp */; };
481FB53B1AC1B5EF0076CFF3 /* boneh.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B66612D37EC400DA6239 /* boneh.cpp */; };
481FB53C1AC1B5F10076CFF3 /* bootstrap.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B66812D37EC400DA6239 /* bootstrap.cpp */; };
481FB53D1AC1B5F80076CFF3 /* bstick.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B66C12D37EC400DA6239 /* bstick.cpp */; };
481FB53F1AC1B6000076CFF3 /* canberra.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B67012D37EC400DA6239 /* canberra.cpp */; };
481FB5401AC1B6030076CFF3 /* chao1.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B67612D37EC400DA6239 /* chao1.cpp */; };
481FB5411AC1B6070076CFF3 /* coverage.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B6BB12D37EC400DA6239 /* coverage.cpp */; };
481FB5421AC1B60D0076CFF3 /* efron.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B6D712D37EC400DA6239 /* efron.cpp */; };
481FB5431AC1B6110076CFF3 /* geom.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B6F012D37EC400DA6239 /* geom.cpp */; };
481FB5441AC1B6140076CFF3 /* goodscoverage.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B70E12D37EC400DA6239 /* goodscoverage.cpp */; };
481FB5451AC1B6170076CFF3 /* gower.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B71212D37EC400DA6239 /* gower.cpp */; };
481FB5461AC1B6190076CFF3 /* hamming.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B71612D37EC400DA6239 /* hamming.cpp */; };
481FB5471AC1B61C0076CFF3 /* heip.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B72412D37EC400DA6239 /* heip.cpp */; };
481FB5481AC1B61F0076CFF3 /* hellinger.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B72612D37EC400DA6239 /* hellinger.cpp */; };
481FB5491AC1B6220076CFF3 /* invsimpson.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B72F12D37EC400DA6239 /* invsimpson.cpp */; };
481FB54A1AC1B6270076CFF3 /* jackknife.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B73112D37EC400DA6239 /* jackknife.cpp */; };
481FB54B1AC1B62A0076CFF3 /* logsd.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B74112D37EC400DA6239 /* logsd.cpp */; };
481FB54C1AC1B62D0076CFF3 /* manhattan.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B74712D37EC400DA6239 /* manhattan.cpp */; };
481FB54D1AC1B6300076CFF3 /* memchi2.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B74B12D37EC400DA6239 /* memchi2.cpp */; };
481FB54E1AC1B6340076CFF3 /* memchord.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B74D12D37EC400DA6239 /* memchord.cpp */; };
481FB54F1AC1B63A0076CFF3 /* memeuclidean.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B74F12D37EC400DA6239 /* memeuclidean.cpp */; };
481FB5501AC1B63D0076CFF3 /* mempearson.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B75112D37EC400DA6239 /* mempearson.cpp */; };
481FB5511AC1B6410076CFF3 /* npshannon.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B76D12D37EC400DA6239 /* npshannon.cpp */; };
481FB5521AC1B6450076CFF3 /* odum.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B77112D37EC400DA6239 /* odum.cpp */; };
481FB5531AC1B6490076CFF3 /* parsimony.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B78312D37EC400DA6239 /* parsimony.cpp */; };
481FB5541AC1B64C0076CFF3 /* prng.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B79912D37EC400DA6239 /* prng.cpp */; };
481FB5551AC1B64F0076CFF3 /* qstat.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B79D12D37EC400DA6239 /* qstat.cpp */; };
481FB5561AC1B6520076CFF3 /* shannon.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B7E512D37EC400DA6239 /* shannon.cpp */; };
481FB5571AC1B6550076CFF3 /* shannoneven.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B7E712D37EC400DA6239 /* shannoneven.cpp */; };
481FB5581AC1B6590076CFF3 /* shannonrange.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7A09B0F18773C0E00FAA081 /* shannonrange.cpp */; };
481FB5591AC1B65D0076CFF3 /* sharedjabund.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B7F412D37EC400DA6239 /* sharedjabund.cpp */; };
481FB55A1AC1B6600076CFF3 /* sharedace.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B7E912D37EC400DA6239 /* sharedace.cpp */; };
481FB55B1AC1B6630076CFF3 /* sharedanderbergs.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B7EC12D37EC400DA6239 /* sharedanderbergs.cpp */; };
481FB55C1AC1B6660076CFF3 /* sharedbraycurtis.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B7EE12D37EC400DA6239 /* sharedbraycurtis.cpp */; };
481FB55D1AC1B6690076CFF3 /* sharedchao1.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B7F012D37EC400DA6239 /* sharedchao1.cpp */; };
481FB55E1AC1B66D0076CFF3 /* sharedjackknife.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B7F612D37EC400DA6239 /* sharedjackknife.cpp */; };
481FB55F1AC1B6750076CFF3 /* sharedjclass.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B7F812D37EC400DA6239 /* sharedjclass.cpp */; };
481FB5601AC1B6790076CFF3 /* sharedjest.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B7FA12D37EC400DA6239 /* sharedjest.cpp */; };
481FB5611AC1B69B0076CFF3 /* sharedjsd.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7222D721856277C0055A993 /* sharedjsd.cpp */; };
481FB5621AC1B69E0076CFF3 /* sharedkstest.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B7FC12D37EC400DA6239 /* sharedkstest.cpp */; };
481FB5631AC1B6A10076CFF3 /* sharedkulczynski.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B7FE12D37EC400DA6239 /* sharedkulczynski.cpp */; };
481FB5641AC1B6A40076CFF3 /* sharedkulczynskicody.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B80012D37EC400DA6239 /* sharedkulczynskicody.cpp */; };
481FB5651AC1B6A70076CFF3 /* sharedlennon.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B80212D37EC400DA6239 /* sharedlennon.cpp */; };
481FB5661AC1B6AA0076CFF3 /* sharedmarczewski.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B80612D37EC400DA6239 /* sharedmarczewski.cpp */; };
481FB5671AC1B6AD0076CFF3 /* sharedmorisitahorn.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B80812D37EC400DA6239 /* sharedmorisitahorn.cpp */; };
481FB5681AC1B6B20076CFF3 /* sharedochiai.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B80B12D37EC400DA6239 /* sharedochiai.cpp */; };
481FB5691AC1B6B50076CFF3 /* sharedrjsd.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 48705AC119BE32C50075E977 /* sharedrjsd.cpp */; };
481FB56A1AC1B6B80076CFF3 /* sharedsobs.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B81512D37EC400DA6239 /* sharedsobs.cpp */; };
481FB56B1AC1B6BB0076CFF3 /* sharedsobscollectsummary.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B81712D37EC400DA6239 /* sharedsobscollectsummary.cpp */; };
481FB56C1AC1B6BE0076CFF3 /* sharedsorabund.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B81912D37EC400DA6239 /* sharedsorabund.cpp */; };
481FB56D1AC1B6C10076CFF3 /* sharedsorclass.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B81B12D37EC400DA6239 /* sharedsorclass.cpp */; };
481FB56E1AC1B6C30076CFF3 /* sharedsorest.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B81D12D37EC400DA6239 /* sharedsorest.cpp */; };
481FB56F1AC1B6C70076CFF3 /* sharedthetan.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B81F12D37EC400DA6239 /* sharedthetan.cpp */; };
481FB5701AC1B6CA0076CFF3 /* sharedthetayc.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B82112D37EC400DA6239 /* sharedthetayc.cpp */; };
481FB5711AC1B6D40076CFF3 /* shen.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B82512D37EC400DA6239 /* shen.cpp */; };
481FB5721AC1B6D40076CFF3 /* simpson.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B82912D37EC400DA6239 /* simpson.cpp */; };
481FB5731AC1B6EA0076CFF3 /* simpsoneven.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B82B12D37EC400DA6239 /* simpsoneven.cpp */; };
481FB5741AC1B6EA0076CFF3 /* smithwilson.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B83212D37EC400DA6239 /* smithwilson.cpp */; };
481FB5751AC1B6EA0076CFF3 /* soergel.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B83512D37EC400DA6239 /* soergel.cpp */; };
481FB5761AC1B6EA0076CFF3 /* solow.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B83712D37EC400DA6239 /* solow.cpp */; };
481FB5771AC1B6EA0076CFF3 /* spearman.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B83B12D37EC400DA6239 /* spearman.cpp */; };
481FB5781AC1B6EA0076CFF3 /* speciesprofile.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B83D12D37EC400DA6239 /* speciesprofile.cpp */; };
481FB5791AC1B6EA0076CFF3 /* structchi2.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B84512D37EC400DA6239 /* structchi2.cpp */; };
481FB57A1AC1B6EA0076CFF3 /* structchord.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B84712D37EC400DA6239 /* structchord.cpp */; };
481FB57B1AC1B6EA0076CFF3 /* structeuclidean.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B84912D37EC400DA6239 /* structeuclidean.cpp */; };
481FB57C1AC1B6EA0076CFF3 /* structkulczynski.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B84B12D37EC400DA6239 /* structkulczynski.cpp */; };
481FB57D1AC1B6EA0076CFF3 /* structpearson.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B84D12D37EC400DA6239 /* structpearson.cpp */; };
481FB57E1AC1B6EA0076CFF3 /* unweighted.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B87012D37EC400DA6239 /* unweighted.cpp */; };
481FB57F1AC1B6EA0076CFF3 /* uvest.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B87212D37EC400DA6239 /* uvest.cpp */; };
481FB5801AC1B6EA0076CFF3 /* weighted.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B87C12D37EC400DA6239 /* weighted.cpp */; };
481FB5811AC1B6EA0076CFF3 /* whittaker.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B87F12D37EC400DA6239 /* whittaker.cpp */; };
481FB5821AC1B6FF0076CFF3 /* bellerophon.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B65C12D37EC300DA6239 /* bellerophon.cpp */; };
481FB5831AC1B6FF0076CFF3 /* ccode.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B67412D37EC400DA6239 /* ccode.cpp */; };
481FB5841AC1B6FF0076CFF3 /* mothurchimera.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B67812D37EC400DA6239 /* mothurchimera.cpp */; };
481FB5851AC1B6FF0076CFF3 /* chimeracheckrdp.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B68012D37EC400DA6239 /* chimeracheckrdp.cpp */; };
481FB5861AC1B6FF0076CFF3 /* chimerarealigner.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B68412D37EC400DA6239 /* chimerarealigner.cpp */; };
481FB5871AC1B6FF0076CFF3 /* decalc.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B6C112D37EC400DA6239 /* decalc.cpp */; };
481FB5881AC1B6FF0076CFF3 /* chimeraslayer.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B68812D37EC400DA6239 /* chimeraslayer.cpp */; };
481FB5891AC1B6FF0076CFF3 /* maligner.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B74512D37EC400DA6239 /* maligner.cpp */; };
481FB58A1AC1B6FF0076CFF3 /* myPerseus.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7BF221214587886000AD524 /* myPerseus.cpp */; };
481FB58B1AC1B6FF0076CFF3 /* pintail.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B79312D37EC400DA6239 /* pintail.cpp */; };
481FB58C1AC1B6FF0076CFF3 /* slayer.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B82E12D37EC400DA6239 /* slayer.cpp */; };
481FB58D1AC1B7060076CFF3 /* collect.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B6A612D37EC400DA6239 /* collect.cpp */; };
481FB58E1AC1B7060076CFF3 /* completelinkage.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 48F98E4C1A9CFD670005E81B /* completelinkage.cpp */; };
481FB58F1AC1B71B0076CFF3 /* newcommandtemplate.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 219C1DDF1552C4BD004209F9 /* newcommandtemplate.cpp */; };
481FB5901AC1B71B0076CFF3 /* aligncommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B65112D37EC300DA6239 /* aligncommand.cpp */; };
481FB5911AC1B71B0076CFF3 /* amovacommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7A61F2C130062E000E05B6B /* amovacommand.cpp */; };
481FB5921AC1B71B0076CFF3 /* anosimcommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A71CB15E130B04A2001E7287 /* anosimcommand.cpp */; };
481FB5931AC1B71B0076CFF3 /* binsequencecommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B66012D37EC300DA6239 /* binsequencecommand.cpp */; };
481FB5951AC1B71B0076CFF3 /* chimerabellerophoncommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B67A12D37EC400DA6239 /* chimerabellerophoncommand.cpp */; };
481FB5961AC1B71B0076CFF3 /* chimeraccodecommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B67C12D37EC400DA6239 /* chimeraccodecommand.cpp */; };
481FB5971AC1B71B0076CFF3 /* chimeracheckcommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B67E12D37EC400DA6239 /* chimeracheckcommand.cpp */; };
481FB5981AC1B71B0076CFF3 /* chimerapintailcommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B68212D37EC400DA6239 /* chimerapintailcommand.cpp */; };
481FB5991AC1B71B0076CFF3 /* chimeraperseuscommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7BF2231145879B2000AD524 /* chimeraperseuscommand.cpp */; };
481FB59A1AC1B71B0076CFF3 /* chimeraslayercommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B68A12D37EC400DA6239 /* chimeraslayercommand.cpp */; };
481FB59B1AC1B71B0076CFF3 /* chimerauchimecommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A74D36B7137DAFAA00332B0C /* chimerauchimecommand.cpp */; };
481FB59C1AC1B71B0076CFF3 /* chopseqscommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B68C12D37EC400DA6239 /* chopseqscommand.cpp */; };
481FB59D1AC1B71B0076CFF3 /* classifyotucommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B69012D37EC400DA6239 /* classifyotucommand.cpp */; };
481FB59E1AC1B71B0076CFF3 /* classifyseqscommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B69212D37EC400DA6239 /* classifyseqscommand.cpp */; };
481FB5A01AC1B71B0076CFF3 /* classifysvmsharedcommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 7B2181FE17AD777B00286E6A /* classifysvmsharedcommand.cpp */; };
481FB5A11AC1B71B0076CFF3 /* classifytreecommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7EEB0F414F29BFD00344B83 /* classifytreecommand.cpp */; };
481FB5A21AC1B71B0076CFF3 /* clearcutcommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B69612D37EC400DA6239 /* clearcutcommand.cpp */; };
481FB5A41AC1B7300076CFF3 /* clustercommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B69C12D37EC400DA6239 /* clustercommand.cpp */; };
481FB5A51AC1B7300076CFF3 /* clusterdoturcommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B69E12D37EC400DA6239 /* clusterdoturcommand.cpp */; };
481FB5A61AC1B7300076CFF3 /* clusterfragmentscommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B6A012D37EC400DA6239 /* clusterfragmentscommand.cpp */; };
481FB5A71AC1B7300076CFF3 /* clustersplitcommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B6A212D37EC400DA6239 /* clustersplitcommand.cpp */; };
481FB5A81AC1B7300076CFF3 /* collectcommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B6A812D37EC400DA6239 /* collectcommand.cpp */; };
481FB5A91AC1B7300076CFF3 /* collectsharedcommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B6AC12D37EC400DA6239 /* collectsharedcommand.cpp */; };
481FB5AA1AC1B7300076CFF3 /* consensusseqscommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B6B712D37EC400DA6239 /* consensusseqscommand.cpp */; };
481FB5AB1AC1B7300076CFF3 /* cooccurrencecommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7C3DC0914FE457500FE1924 /* cooccurrencecommand.cpp */; };
481FB5AC1AC1B7300076CFF3 /* corraxescommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B6B912D37EC400DA6239 /* corraxescommand.cpp */; };
481FB5AD1AC1B7300076CFF3 /* countgroupscommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A795840C13F13CD900F201D5 /* countgroupscommand.cpp */; };
481FB5AE1AC1B7300076CFF3 /* countseqscommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7730EFE13967241007433A3 /* countseqscommand.cpp */; };
481FB5AF1AC1B7300076CFF3 /* createdatabasecommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A77EBD2E1523709100ED407C /* createdatabasecommand.cpp */; };
481FB5B01AC1B7300076CFF3 /* uniqueseqscommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B6C312D37EC400DA6239 /* uniqueseqscommand.cpp */; };
481FB5B11AC1B7300076CFF3 /* degapseqscommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B6C512D37EC400DA6239 /* degapseqscommand.cpp */; };
481FB5B21AC1B7300076CFF3 /* deuniqueseqscommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B6C712D37EC400DA6239 /* deuniqueseqscommand.cpp */; };
481FB5B31AC1B7300076CFF3 /* deuniquetreecommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A77A221E139001B600B0BE70 /* deuniquetreecommand.cpp */; };
481FB5B41AC1B7300076CFF3 /* distancecommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B6CB12D37EC400DA6239 /* distancecommand.cpp */; };
481FB5B51AC1B7300076CFF3 /* filterseqscommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B6E312D37EC400DA6239 /* filterseqscommand.cpp */; };
481FB5B61AC1B74F0076CFF3 /* filtersharedcommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A79EEF8516971D4A0006DEC1 /* filtersharedcommand.cpp */; };
481FB5B81AC1B74F0076CFF3 /* getcoremicrobiomecommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 219C1DE31559BCCD004209F9 /* getcoremicrobiomecommand.cpp */; };
481FB5B91AC1B74F0076CFF3 /* getcurrentcommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7FE7C3F1330EA1000F7B327 /* getcurrentcommand.cpp */; };
481FB5BA1AC1B74F0076CFF3 /* getdistscommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7128B1C16B7002600723BE4 /* getdistscommand.cpp */; };
481FB5BB1AC1B74F0076CFF3 /* getgroupcommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B6F212D37EC400DA6239 /* getgroupcommand.cpp */; };
481FB5BC1AC1B74F0076CFF3 /* getgroupscommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B6F412D37EC400DA6239 /* getgroupscommand.cpp */; };
481FB5BD1AC1B74F0076CFF3 /* getlabelcommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B6F612D37EC400DA6239 /* getlabelcommand.cpp */; };
481FB5BE1AC1B74F0076CFF3 /* getmetacommunitycommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7548FAC17142EBC00B1F05A /* getmetacommunitycommand.cpp */; };
481FB5BF1AC1B74F0076CFF3 /* getmimarkspackagecommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 48705ABB19BE32C50075E977 /* getmimarkspackagecommand.cpp */; };
481FB5C01AC1B74F0076CFF3 /* getlineagecommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B6F812D37EC400DA6239 /* getlineagecommand.cpp */; };
481FB5C11AC1B74F0076CFF3 /* getlistcountcommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B6FA12D37EC400DA6239 /* getlistcountcommand.cpp */; };
481FB5C21AC1B74F0076CFF3 /* getoturepcommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B6FE12D37EC400DA6239 /* getoturepcommand.cpp */; };
481FB5C41AC1B74F0076CFF3 /* getotuscommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A70056E5156A93D000924A2D /* getotuscommand.cpp */; };
481FB5C51AC1B74F0076CFF3 /* getrabundcommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B70212D37EC400DA6239 /* getrabundcommand.cpp */; };
481FB5C61AC1B74F0076CFF3 /* getrelabundcommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B70412D37EC400DA6239 /* getrelabundcommand.cpp */; };
481FB5C71AC1B74F0076CFF3 /* getsabundcommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B70612D37EC400DA6239 /* getsabundcommand.cpp */; };
481FB5C81AC1B74F0076CFF3 /* getseqscommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B70812D37EC400DA6239 /* getseqscommand.cpp */; };
481FB5C91AC1B74F0076CFF3 /* getsharedotucommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B70A12D37EC400DA6239 /* getsharedotucommand.cpp */; };
481FB5CB1AC1B74F0076CFF3 /* heatmapcommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B71E12D37EC400DA6239 /* heatmapcommand.cpp */; };
481FB5CC1AC1B74F0076CFF3 /* heatmapsimcommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B72212D37EC400DA6239 /* heatmapsimcommand.cpp */; };
481FB5CD1AC1B74F0076CFF3 /* helpcommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B72812D37EC400DA6239 /* helpcommand.cpp */; };
481FB5CE1AC1B75C0076CFF3 /* homovacommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A75790581301749D00A30DAB /* homovacommand.cpp */; };
481FB5CF1AC1B75C0076CFF3 /* indicatorcommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B72B12D37EC400DA6239 /* indicatorcommand.cpp */; };
481FB5D01AC1B75C0076CFF3 /* kruskalwalliscommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7496D2C167B531B00CC7D7C /* kruskalwalliscommand.cpp */; };
481FB5D11AC1B75C0076CFF3 /* lefsecommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7190B201768E0DF00A9AFA6 /* lefsecommand.cpp */; };
481FB5D21AC1B75C0076CFF3 /* libshuffcommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B73B12D37EC400DA6239 /* libshuffcommand.cpp */; };
481FB5D31AC1B75C0076CFF3 /* listotuscommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7A067191562946F0095C8C5 /* listotuscommand.cpp */; };
481FB5D41AC1B75C0076CFF3 /* listseqscommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B73D12D37EC400DA6239 /* listseqscommand.cpp */; };
481FB5D61AC1B75C0076CFF3 /* mantelcommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7FA10011302E096003860FE /* mantelcommand.cpp */; };
481FB5D71AC1B75C0076CFF3 /* makebiomcommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A724D2B6153C8628000A826F /* makebiomcommand.cpp */; };
481FB5D81AC1B75C0076CFF3 /* makecontigscommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7A0671E1562AC3E0095C8C5 /* makecontigscommand.cpp */; };
481FB5D91AC1B75C0076CFF3 /* makefastqcommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A799F5B81309A3E000AEEFA0 /* makefastqcommand.cpp */; };
481FB5DA1AC1B75C0076CFF3 /* makegroupcommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B74312D37EC400DA6239 /* makegroupcommand.cpp */; };
481FB5DB1AC1B75C0076CFF3 /* makelefsecommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A741744A175CD9B1007DF49B /* makelefsecommand.cpp */; };
481FB5DC1AC1B75C0076CFF3 /* makelookupcommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E6F69D17427D06006775E2 /* makelookupcommand.cpp */; };
481FB5DD1AC1B77E0076CFF3 /* distsharedcommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B74912D37EC400DA6239 /* distsharedcommand.cpp */; };
481FB5DE1AC1B77E0076CFF3 /* mergesfffilecommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 48705ABF19BE32C50075E977 /* mergesfffilecommand.cpp */; };
481FB5DF1AC1B77E0076CFF3 /* mergefilecommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B75312D37EC400DA6239 /* mergefilecommand.cpp */; };
481FB5E01AC1B77E0076CFF3 /* mergegroupscommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A71FE12B12EDF72400963CA7 /* mergegroupscommand.cpp */; };
481FB5E11AC1B77E0076CFF3 /* mergetaxsummarycommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A799314A16CBD0CD0017E888 /* mergetaxsummarycommand.cpp */; };
481FB5E21AC1B77E0076CFF3 /* metastatscommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B75712D37EC400DA6239 /* metastatscommand.cpp */; };
481FB5E31AC1B77E0076CFF3 /* mgclustercommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B75912D37EC400DA6239 /* mgclustercommand.cpp */; };
481FB5E41AC1B77E0076CFF3 /* mimarksattributescommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 487C5A851AB88B93002AF48A /* mimarksattributescommand.cpp */; };
481FB5E51AC1B77E0076CFF3 /* nocommands.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B76912D37EC400DA6239 /* nocommands.cpp */; };
481FB5E61AC1B77E0076CFF3 /* normalizesharedcommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B76B12D37EC400DA6239 /* normalizesharedcommand.cpp */; };
481FB5E71AC1B77E0076CFF3 /* nmdscommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A713EBEC12DC7C5E000092AC /* nmdscommand.cpp */; };
481FB5E81AC1B77E0076CFF3 /* otuassociationcommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7A3C8C714D041AD00B1BFBE /* otuassociationcommand.cpp */; };
481FB5E91AC1B77E0076CFF3 /* otuhierarchycommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B77912D37EC400DA6239 /* otuhierarchycommand.cpp */; };
481FB5EA1AC1B77E0076CFF3 /* pairwiseseqscommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B77D12D37EC400DA6239 /* pairwiseseqscommand.cpp */; };
481FB5EB1AC1B77E0076CFF3 /* fastaqinfocommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B77F12D37EC400DA6239 /* fastaqinfocommand.cpp */; };
481FB5ED1AC1B77E0076CFF3 /* parsimonycommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B78512D37EC400DA6239 /* parsimonycommand.cpp */; };
481FB5EE1AC1B77E0076CFF3 /* pcacommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7FC486612D795D60055BC5C /* pcacommand.cpp */; };
481FB5EF1AC1B77E0076CFF3 /* pcoacommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B78712D37EC400DA6239 /* pcoacommand.cpp */; };
481FB5F11AC1B77E0076CFF3 /* phylodiversitycommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B78B12D37EC400DA6239 /* phylodiversitycommand.cpp */; };
481FB5F21AC1B77E0076CFF3 /* phylotypecommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B79112D37EC400DA6239 /* phylotypecommand.cpp */; };
481FB5F41AC1B77E0076CFF3 /* preclustercommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B79712D37EC400DA6239 /* preclustercommand.cpp */; };
481FB5F51AC1B77E0076CFF3 /* primerdesigncommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A74C06E816A9C0A8008390A3 /* primerdesigncommand.cpp */; };
481FB5F61AC1B77E0076CFF3 /* quitcommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B7A112D37EC400DA6239 /* quitcommand.cpp */; };
481FB5F71AC1B77E0076CFF3 /* rarefactcommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B7AB12D37EC400DA6239 /* rarefactcommand.cpp */; };
481FB5F81AC1B77E0076CFF3 /* rarefactsharedcommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B7AE12D37EC400DA6239 /* rarefactsharedcommand.cpp */; };
481FB5F91AC1B77E0076CFF3 /* removedistscommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7B0231416B8244B006BA09E /* removedistscommand.cpp */; };
481FB5FA1AC1B77E0076CFF3 /* removegroupscommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B7C312D37EC400DA6239 /* removegroupscommand.cpp */; };
481FB5FB1AC1B77E0076CFF3 /* removelineagecommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B7C512D37EC400DA6239 /* removelineagecommand.cpp */; };
481FB5FD1AC1B7970076CFF3 /* removeotuscommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A70056EA156AB6E500924A2D /* removeotuscommand.cpp */; };
481FB5FE1AC1B7970076CFF3 /* removerarecommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A727864312E9E28C00F86ABA /* removerarecommand.cpp */; };
481FB5FF1AC1B7970076CFF3 /* removeseqscommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B7C912D37EC400DA6239 /* removeseqscommand.cpp */; };
481FB6001AC1B7970076CFF3 /* renameseqscommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7CFA4301755401800D9ED4D /* renameseqscommand.cpp */; };
481FB6011AC1B7970076CFF3 /* reversecommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B7CD12D37EC400DA6239 /* reversecommand.cpp */; };
481FB6021AC1B7970076CFF3 /* screenseqscommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B7D112D37EC400DA6239 /* screenseqscommand.cpp */; };
481FB6031AC1B7970076CFF3 /* aligncheckcommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B7D312D37EC400DA6239 /* aligncheckcommand.cpp */; };
481FB6041AC1B7970076CFF3 /* sensspeccommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B7D512D37EC400DA6239 /* sensspeccommand.cpp */; };
481FB6051AC1B7970076CFF3 /* seqerrorcommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B7D712D37EC400DA6239 /* seqerrorcommand.cpp */; };
481FB6061AC1B7970076CFF3 /* seqsummarycommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B7D912D37EC400DA6239 /* seqsummarycommand.cpp */; };
481FB6071AC1B7970076CFF3 /* setcurrentcommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7FE7E6C13311EA400F7B327 /* setcurrentcommand.cpp */; };
481FB6081AC1B7970076CFF3 /* setdircommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B7DF12D37EC400DA6239 /* setdircommand.cpp */; };
481FB6091AC1B7970076CFF3 /* setlogfilecommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B7E112D37EC400DA6239 /* setlogfilecommand.cpp */; };
481FB60A1AC1B7970076CFF3 /* sffinfocommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B7E312D37EC400DA6239 /* sffinfocommand.cpp */; };
481FB60B1AC1B7AC0076CFF3 /* sffmultiplecommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7C7DAB815DA758B0059B0CF /* sffmultiplecommand.cpp */; };
481FB60C1AC1B7AC0076CFF3 /* makesharedcommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B7F212D37EC400DA6239 /* makesharedcommand.cpp */; };
481FB60D1AC1B7AC0076CFF3 /* shhhercommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B82712D37EC400DA6239 /* shhhercommand.cpp */; };
481FB60E1AC1B7AC0076CFF3 /* shhhseqscommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A774101314695AF60098E6AC /* shhhseqscommand.cpp */; };
481FB60F1AC1B7AC0076CFF3 /* sortseqscommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7A32DA914DC43B00001D2E5 /* sortseqscommand.cpp */; };
481FB6101AC1B7AC0076CFF3 /* sparcccommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A77B7184173D2240002163C2 /* sparcccommand.cpp */; };
481FB6111AC1B7AC0076CFF3 /* splitabundcommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B83F12D37EC400DA6239 /* splitabundcommand.cpp */; };
481FB6121AC1B7AC0076CFF3 /* splitgroupscommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B84112D37EC400DA6239 /* splitgroupscommand.cpp */; };
481FB6131AC1B7AC0076CFF3 /* sracommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A747EC70181EA0F900345732 /* sracommand.cpp */; };
481FB6141AC1B7AC0076CFF3 /* subsamplecommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B84F12D37EC400DA6239 /* subsamplecommand.cpp */; };
481FB6151AC1B7AC0076CFF3 /* summarycommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B85712D37EC400DA6239 /* summarycommand.cpp */; };
481FB6161AC1B7AC0076CFF3 /* summaryqualcommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A754149614840CF7005850D1 /* summaryqualcommand.cpp */; };
481FB6171AC1B7AC0076CFF3 /* summarysharedcommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B85912D37EC400DA6239 /* summarysharedcommand.cpp */; };
481FB6181AC1B7AC0076CFF3 /* summarytaxcommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7FFB557142CA02C004884F2 /* summarytaxcommand.cpp */; };
481FB6191AC1B7AC0076CFF3 /* systemcommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B85B12D37EC400DA6239 /* systemcommand.cpp */; };
481FB61A1AC1B7AC0076CFF3 /* treesharedcommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B86212D37EC400DA6239 /* treesharedcommand.cpp */; };
481FB61B1AC1B7AC0076CFF3 /* trimflowscommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B86812D37EC400DA6239 /* trimflowscommand.cpp */; };
481FB61C1AC1B7AC0076CFF3 /* trimseqscommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B86A12D37EC400DA6239 /* trimseqscommand.cpp */; };
481FB61D1AC1B7AC0076CFF3 /* unifracunweightedcommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B86C12D37EC400DA6239 /* unifracunweightedcommand.cpp */; };
481FB61E1AC1B7AC0076CFF3 /* unifracweightedcommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B86E12D37EC400DA6239 /* unifracweightedcommand.cpp */; };
481FB61F1AC1B7AC0076CFF3 /* venncommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B87A12D37EC400DA6239 /* venncommand.cpp */; };
481FB6201AC1B7B30076CFF3 /* commandoptionparser.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B6B112D37EC400DA6239 /* commandoptionparser.cpp */; };
481FB6211AC1B7BA0076CFF3 /* communitytype.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7132EB2184E792700AAA402 /* communitytype.cpp */; };
481FB6221AC1B7BA0076CFF3 /* kmeans.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7D395C3184FA3A200A350D7 /* kmeans.cpp */; };
481FB6231AC1B7BA0076CFF3 /* pam.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7B093BF18579F0400843CD1 /* pam.cpp */; };
481FB6241AC1B7BA0076CFF3 /* qFinderDMM.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7548FAE171440EC00B1F05A /* qFinderDMM.cpp */; };
481FB6251AC1B7EA0076CFF3 /* alignment.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B65312D37EC300DA6239 /* alignment.cpp */; };
481FB6261AC1B7EA0076CFF3 /* alignmentcell.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B65512D37EC300DA6239 /* alignmentcell.cpp */; };
481FB6271AC1B7EA0076CFF3 /* alignmentdb.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B65712D37EC300DA6239 /* alignmentdb.cpp */; };
481FB62A1AC1B7EA0076CFF3 /* counttable.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A74D59A3159A1E2000043046 /* counttable.cpp */; };
481FB62C1AC1B7EA0076CFF3 /* designmap.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A77916E6176F7F7600EEFE18 /* designmap.cpp */; };
481FB62D1AC1B7EA0076CFF3 /* distancedb.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B6CD12D37EC400DA6239 /* distancedb.cpp */; };
481FB62E1AC1B7EA0076CFF3 /* fastamap.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B6DE12D37EC400DA6239 /* fastamap.cpp */; };
481FB62F1AC1B7EA0076CFF3 /* fastqread.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 48C51DEF1A76B888004ECDF1 /* fastqread.cpp */; };
481FB6301AC1B7EA0076CFF3 /* flowdata.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B6E712D37EC400DA6239 /* flowdata.cpp */; };
481FB6311AC1B7EA0076CFF3 /* fullmatrix.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B6EE12D37EC400DA6239 /* fullmatrix.cpp */; };
481FB6321AC1B7EA0076CFF3 /* groupmap.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B71412D37EC400DA6239 /* groupmap.cpp */; };
481FB6331AC1B7EA0076CFF3 /* kmer.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B73312D37EC400DA6239 /* kmer.cpp */; };
481FB6341AC1B7EA0076CFF3 /* kmeralign.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 48C51DF11A793EFE004ECDF1 /* kmeralign.cpp */; };
481FB6351AC1B7EA0076CFF3 /* kmerdb.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B73512D37EC400DA6239 /* kmerdb.cpp */; };
481FB6361AC1B7EA0076CFF3 /* listvector.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B73F12D37EC400DA6239 /* listvector.cpp */; };
481FB6371AC1B7EA0076CFF3 /* nameassignment.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B75F12D37EC400DA6239 /* nameassignment.cpp */; };
481FB6381AC1B7EA0076CFF3 /* oligos.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 48705ABD19BE32C50075E977 /* oligos.cpp */; };
481FB6391AC1B7EA0076CFF3 /* ordervector.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B77712D37EC400DA6239 /* ordervector.cpp */; };
481FB63A1AC1B7EA0076CFF3 /* qualityscores.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B79F12D37EC400DA6239 /* qualityscores.cpp */; };
481FB63B1AC1B7EA0076CFF3 /* rabundvector.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B7A312D37EC400DA6239 /* rabundvector.cpp */; };
481FB63E1AC1B7EA0076CFF3 /* sabundvector.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B7CF12D37EC400DA6239 /* sabundvector.cpp */; };
481FB63F1AC1B7EA0076CFF3 /* sequencecountparser.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A741FAD115D1688E0067BCC5 /* sequencecountparser.cpp */; };
481FB6401AC1B7EA0076CFF3 /* sequencedb.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B7DD12D37EC400DA6239 /* sequencedb.cpp */; };
481FB6411AC1B7EA0076CFF3 /* sequenceparser.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7F9F5CE141A5E500032F693 /* sequenceparser.cpp */; };
481FB6421AC1B7EA0076CFF3 /* sharedlistvector.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B80412D37EC400DA6239 /* sharedlistvector.cpp */; };
481FB6431AC1B7EA0076CFF3 /* sharedordervector.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B80D12D37EC400DA6239 /* sharedordervector.cpp */; };
481FB6471AC1B7EA0076CFF3 /* sparsematrix.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B83912D37EC400DA6239 /* sparsematrix.cpp */; };
481FB6481AC1B7EA0076CFF3 /* sparsedistancematrix.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E0243C15B4520A00A5F046 /* sparsedistancematrix.cpp */; };
481FB6491AC1B7F40076CFF3 /* suffixdb.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B85112D37EC400DA6239 /* suffixdb.cpp */; };
481FB64A1AC1B7F40076CFF3 /* suffixnodes.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B85312D37EC400DA6239 /* suffixnodes.cpp */; };
481FB64B1AC1B7F40076CFF3 /* suffixtree.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B85512D37EC400DA6239 /* suffixtree.cpp */; };
481FB64C1AC1B7F40076CFF3 /* tree.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B85F12D37EC400DA6239 /* tree.cpp */; };
481FB64D1AC1B7F40076CFF3 /* treemap.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B86412D37EC400DA6239 /* treemap.cpp */; };
481FB64E1AC1B7F40076CFF3 /* treenode.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B86612D37EC400DA6239 /* treenode.cpp */; };
481FB64F1AC1B8100076CFF3 /* consensus.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B6B512D37EC400DA6239 /* consensus.cpp */; };
481FB6501AC1B8100076CFF3 /* dlibshuff.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B6D112D37EC400DA6239 /* dlibshuff.cpp */; };
481FB6521AC1B8100076CFF3 /* fileoutput.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B6E012D37EC400DA6239 /* fileoutput.cpp */; };
481FB6531AC1B8100076CFF3 /* gotohoverlap.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B71012D37EC400DA6239 /* gotohoverlap.cpp */; };
481FB6551AC1B8100076CFF3 /* heatmap.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B71C12D37EC400DA6239 /* heatmap.cpp */; };
481FB6561AC1B8100076CFF3 /* heatmapsim.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B72012D37EC400DA6239 /* heatmapsim.cpp */; };
481FB6571AC1B8100076CFF3 /* inputdata.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B72D12D37EC400DA6239 /* inputdata.cpp */; };
481FB6581AC1B8100076CFF3 /* libshuff.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B73912D37EC400DA6239 /* libshuff.cpp */; };
481FB6591AC1B8100076CFF3 /* linearalgebra.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7FC480D12D788F20055BC5C /* linearalgebra.cpp */; };
481FB65A1AC1B8100076CFF3 /* wilcox.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7D9378917B146B5001E90B0 /* wilcox.cpp */; };
481FB65B1AC1B82C0076CFF3 /* mothurfisher.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A79234D613C74BF6002B08E2 /* mothurfisher.cpp */; };
481FB65C1AC1B82C0076CFF3 /* mothurmetastats.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A73DDC3713C4BF64006AAE38 /* mothurmetastats.cpp */; };
481FB65F1AC1B8450076CFF3 /* myseqdist.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A774104614696F320098E6AC /* myseqdist.cpp */; };
481FB6601AC1B8450076CFF3 /* nast.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B76112D37EC400DA6239 /* nast.cpp */; };
481FB6611AC1B8450076CFF3 /* alignreport.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B76312D37EC400DA6239 /* alignreport.cpp */; };
481FB6621AC1B8450076CFF3 /* noalign.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B76712D37EC400DA6239 /* noalign.cpp */; };
481FB6631AC1B8450076CFF3 /* needlemanoverlap.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B76512D37EC400DA6239 /* needlemanoverlap.cpp */; };
481FB6641AC1B8450076CFF3 /* optionparser.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B77512D37EC400DA6239 /* optionparser.cpp */; };
481FB6651AC1B8450076CFF3 /* overlap.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B77B12D37EC400DA6239 /* overlap.cpp */; };
481FB6701AC1B8820076CFF3 /* raredisplay.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B7A712D37EC400DA6239 /* raredisplay.cpp */; };
481FB6711AC1B8820076CFF3 /* rarefact.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B7A912D37EC400DA6239 /* rarefact.cpp */; };
481FB6721AC1B8820076CFF3 /* refchimeratest.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 7E6BE10912F710D8007ADDBE /* refchimeratest.cpp */; };
481FB6731AC1B8820076CFF3 /* seqnoise.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A77410F414697C300098E6AC /* seqnoise.cpp */; };
481FB6761AC1B88F0076CFF3 /* readblast.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B7B012D37EC400DA6239 /* readblast.cpp */; };
481FB6771AC1B88F0076CFF3 /* readcluster.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B7B212D37EC400DA6239 /* readcluster.cpp */; };
481FB6781AC1B88F0076CFF3 /* readcolumn.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B7B412D37EC400DA6239 /* readcolumn.cpp */; };
481FB6791AC1B88F0076CFF3 /* readphylip.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B7BD12D37EC400DA6239 /* readphylip.cpp */; };
481FB67A1AC1B88F0076CFF3 /* readtree.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B7BF12D37EC400DA6239 /* readtree.cpp */; };
481FB67B1AC1B88F0076CFF3 /* readphylipvector.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A713EBAB12DC7613000092AC /* readphylipvector.cpp */; };
481FB67C1AC1B88F0076CFF3 /* splitmatrix.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B84312D37EC400DA6239 /* splitmatrix.cpp */; };
481FB67D1AC1B88F0076CFF3 /* treereader.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7D755D91535F679009BF21A /* treereader.cpp */; };
481FB67F1AC1B8960076CFF3 /* singlelinkage.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B82D12D37EC400DA6239 /* singlelinkage.cpp */; };
481FB6801AC1B8960076CFF3 /* slibshuff.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B83012D37EC400DA6239 /* slibshuff.cpp */; };
481FB6811AC1B8960076CFF3 /* subsample.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7876A25152A017C00A0AE86 /* subsample.cpp */; };
481FB6821AC1B8AF0076CFF3 /* svm.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 7B21820117AD77BD00286E6A /* svm.cpp */; };
481FB6831AC1B8B80076CFF3 /* trialSwap2.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7C3DC0D14FE469500FE1924 /* trialSwap2.cpp */; };
481FB6841AC1B8B80076CFF3 /* trimoligos.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7FF19F1140FFDA500AD216D /* trimoligos.cpp */; };
481FB6851AC1B8B80076CFF3 /* validcalculator.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B87412D37EC400DA6239 /* validcalculator.cpp */; };
481FB6861AC1B8B80076CFF3 /* validparameter.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B87612D37EC400DA6239 /* validparameter.cpp */; };
481FB6871AC1B8B80076CFF3 /* venn.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B87812D37EC400DA6239 /* venn.cpp */; };
481FB6881AC1B8B80076CFF3 /* weightedlinkage.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B87E12D37EC400DA6239 /* weightedlinkage.cpp */; };
481FB6891AC1BA760076CFF3 /* phylosummary.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B78D12D37EC400DA6239 /* phylosummary.cpp */; };
481FB68A1AC1BA9E0076CFF3 /* alignnode.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A721AB66161C570F009860A1 /* alignnode.cpp */; };
481FB68B1AC1BA9E0076CFF3 /* aligntree.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A721AB68161C570F009860A1 /* aligntree.cpp */; };
481FB68C1AC1BA9E0076CFF3 /* bayesian.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B65A12D37EC300DA6239 /* bayesian.cpp */; };
481FB68D1AC1BA9E0076CFF3 /* classify.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B68E12D37EC400DA6239 /* classify.cpp */; };
481FB68E1AC1BA9E0076CFF3 /* kmernode.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A721AB6D161C572A009860A1 /* kmernode.cpp */; };
481FB68F1AC1BA9E0076CFF3 /* kmertree.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A721AB6F161C572A009860A1 /* kmertree.cpp */; };
481FB6901AC1BA9E0076CFF3 /* knn.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B73712D37EC400DA6239 /* knn.cpp */; };
481FB6911AC1BAA60076CFF3 /* phylotree.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B78F12D37EC400DA6239 /* phylotree.cpp */; };
481FB6921AC1BAA60076CFF3 /* taxonomyequalizer.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B85D12D37EC400DA6239 /* taxonomyequalizer.cpp */; };
481FB6931AC1BAA60076CFF3 /* taxonomynode.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A721AB73161C573B009860A1 /* taxonomynode.cpp */; };
4827A4DC1CB3ED2200345170 /* fastqdataset.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 4827A4DA1CB3ED2100345170 /* fastqdataset.cpp */; };
4829D9671B8387D0002EEED4 /* testbiominfocommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 4829D9651B8387D0002EEED4 /* testbiominfocommand.cpp */; };
482AC3B92562B57600C9AF4A /* picrust.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 482AC3B72562B57600C9AF4A /* picrust.cpp */; };
482AC3BA2562B57600C9AF4A /* picrust.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 482AC3B72562B57600C9AF4A /* picrust.cpp */; };
483A9BAE225BBE55006102DF /* metroig.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 483A9BAC225BBE55006102DF /* metroig.cpp */; };
483A9BAF225BBE55006102DF /* metroig.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 483A9BAC225BBE55006102DF /* metroig.cpp */; };
483C952E188F0CAD0035E7B7 /* (null) in Sources */ = {isa = PBXBuildFile; };
484976DF22552E0B00F3A291 /* erarefaction.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 484976DD22552E0B00F3A291 /* erarefaction.cpp */; };
484976E022552E0B00F3A291 /* erarefaction.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 484976DD22552E0B00F3A291 /* erarefaction.cpp */; };
484976E32255412400F3A291 /* igabundance.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 484976E12255412400F3A291 /* igabundance.cpp */; };
484976E42255412400F3A291 /* igabundance.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 484976E12255412400F3A291 /* igabundance.cpp */; };
484976E72256799100F3A291 /* diversityestimatorcommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 484976E52256799100F3A291 /* diversityestimatorcommand.cpp */; };
484976E82256799100F3A291 /* diversityestimatorcommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 484976E52256799100F3A291 /* diversityestimatorcommand.cpp */; };
48576EA11D05DBC600BBC9C0 /* averagelinkage.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 2114A7671C654D7400D3D8D9 /* averagelinkage.cpp */; };
48576EA21D05DBCD00BBC9C0 /* vsearchfileparser.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 489B55701BCD7F0100FB7DC8 /* vsearchfileparser.cpp */; };
48576EA51D05E8F600BBC9C0 /* testoptimatrix.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 48576EA31D05E8F600BBC9C0 /* testoptimatrix.cpp */; };
48576EA81D05F59300BBC9C0 /* distpdataset.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 48576EA61D05F59300BBC9C0 /* distpdataset.cpp */; };
485B0E081F264F2E00CA5F57 /* sharedrabundvector.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 485B0E061F264F2E00CA5F57 /* sharedrabundvector.cpp */; };
485B0E0E1F27C40500CA5F57 /* sharedrabundfloatvector.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 485B0E0C1F27C40500CA5F57 /* sharedrabundfloatvector.cpp */; };
48705AC419BE32C50075E977 /* getmimarkspackagecommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 48705ABB19BE32C50075E977 /* getmimarkspackagecommand.cpp */; };
48705AC519BE32C50075E977 /* oligos.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 48705ABD19BE32C50075E977 /* oligos.cpp */; };
48705AC619BE32C50075E977 /* mergesfffilecommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 48705ABF19BE32C50075E977 /* mergesfffilecommand.cpp */; };
48705AC719BE32C50075E977 /* sharedrjsd.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 48705AC119BE32C50075E977 /* sharedrjsd.cpp */; };
487C5A871AB88B93002AF48A /* mimarksattributescommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 487C5A851AB88B93002AF48A /* mimarksattributescommand.cpp */; };
487D09EC1CB2CEFE007039BF /* averagelinkage.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 2114A7671C654D7400D3D8D9 /* averagelinkage.cpp */; };
488563D123CD00C4007B5659 /* taxonomy.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 488563CF23CD00C4007B5659 /* taxonomy.cpp */; };
488563D223CD00C4007B5659 /* taxonomy.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 488563CF23CD00C4007B5659 /* taxonomy.cpp */; };
488841611CC515A000C5E972 /* (null) in Sources */ = {isa = PBXBuildFile; };
488841621CC515A000C5E972 /* (null) in Sources */ = {isa = PBXBuildFile; };
488841651CC6C34900C5E972 /* renamefilecommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 488841631CC6C34900C5E972 /* renamefilecommand.cpp */; };
488841661CC6C35500C5E972 /* renamefilecommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 488841631CC6C34900C5E972 /* renamefilecommand.cpp */; };
4889EA221E8962D50054E0BB /* summary.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 4889EA201E8962D50054E0BB /* summary.cpp */; };
48910D431D5243E500F60EDB /* mergecountcommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 48910D411D5243E500F60EDB /* mergecountcommand.cpp */; };
48910D441D5243E500F60EDB /* mergecountcommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 48910D411D5243E500F60EDB /* mergecountcommand.cpp */; };
48910D461D58CAD700F60EDB /* opticluster.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 48910D451D58CAD700F60EDB /* opticluster.cpp */; };
48910D4B1D58CBA300F60EDB /* optimatrix.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 48910D491D58CBA300F60EDB /* optimatrix.cpp */; };
48910D511D58E26C00F60EDB /* testopticluster.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 48910D4D1D58E26C00F60EDB /* testopticluster.cpp */; };
48910D521D58E26C00F60EDB /* distcdataset.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 48910D501D58E26C00F60EDB /* distcdataset.cpp */; };
489387F62107A60C00284329 /* testoptirefmatrix.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 489387F42107A60C00284329 /* testoptirefmatrix.cpp */; };
489387F9210F633E00284329 /* testOligos.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 489387F7210F633E00284329 /* testOligos.cpp */; };
489387FA2110C79200284329 /* testtrimoligos.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 4846AD881D3810DD00DE9913 /* testtrimoligos.cpp */; };
4893DE2918EEF28100C615DF /* (null) in Sources */ = {isa = PBXBuildFile; };
48998B69242E785100DBD0A9 /* onegapdist.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 48998B68242E785100DBD0A9 /* onegapdist.cpp */; };
48998B6A242E785100DBD0A9 /* onegapdist.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 48998B68242E785100DBD0A9 /* onegapdist.cpp */; };
489AF68F2106188E0028155E /* sensspeccalc.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 48B01D2A2016470F006BE140 /* sensspeccalc.cpp */; };
489AF690210618A80028155E /* optiblastmatrix.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 48FB99CA20A4AD7D00FF9F6E /* optiblastmatrix.cpp */; };
489AF691210619140028155E /* sharedrabundvector.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 485B0E061F264F2E00CA5F57 /* sharedrabundvector.cpp */; };
489AF692210619170028155E /* sharedrabundfloatvector.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 485B0E0C1F27C40500CA5F57 /* sharedrabundfloatvector.cpp */; };
489AF6932106192E0028155E /* clusterfitcommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 48B01D2720163594006BE140 /* clusterfitcommand.cpp */; };
489AF694210619410028155E /* optirefmatrix.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 48FB99C3209B69FA00FF9F6E /* optirefmatrix.cpp */; };
489AF6952106194A0028155E /* optifitcluster.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 48FB99CD20A4F3FB00FF9F6E /* optifitcluster.cpp */; };
489AF6962106195E0028155E /* optidata.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 48FB99C720A48EF700FF9F6E /* optidata.cpp */; };
48A055302490066C00D0F97F /* sffread.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 48A0552E2490066C00D0F97F /* sffread.cpp */; };
48A055332491577800D0F97F /* sffheader.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 48A055312491577800D0F97F /* sffheader.cpp */; };
48A0B8EC2547282600726384 /* biom.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 48A0B8EA2547282600726384 /* biom.cpp */; };
48A0B8F125472C4500726384 /* biomhdf5.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 48A0B8EF25472C4500726384 /* biomhdf5.cpp */; };
48A0B8F625472C6500726384 /* biomsimple.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 48A0B8F425472C6500726384 /* biomsimple.cpp */; };
48A11C6E1CDA40F0003481D8 /* testrenamefilecommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 48A11C6C1CDA40F0003481D8 /* testrenamefilecommand.cpp */; };
48A85BAD18E1AF2000199B6F /* (null) in Sources */ = {isa = PBXBuildFile; };
48B01D2920163594006BE140 /* clusterfitcommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 48B01D2720163594006BE140 /* clusterfitcommand.cpp */; };
48B01D2C2016470F006BE140 /* sensspeccalc.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 48B01D2A2016470F006BE140 /* sensspeccalc.cpp */; };
48B44EEE1FB5006500789C45 /* currentfile.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 48B44EED1FB5006500789C45 /* currentfile.cpp */; };
48B44EEF1FB5006500789C45 /* currentfile.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 48B44EED1FB5006500789C45 /* currentfile.cpp */; };
48B44EF21FB9EF8200789C45 /* utils.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 48B44EF01FB9EF8200789C45 /* utils.cpp */; };
48B44EF31FB9EF8200789C45 /* utils.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 48B44EF01FB9EF8200789C45 /* utils.cpp */; };
48B662031BBB1B6600997EE4 /* testrenameseqscommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 48B662011BBB1B6600997EE4 /* testrenameseqscommand.cpp */; };
48BD4EB821F7724C008EA73D /* filefile.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 48BD4EB621F7724C008EA73D /* filefile.cpp */; };
48BD4EB921F77258008EA73D /* filefile.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 48BD4EB621F7724C008EA73D /* filefile.cpp */; };
48BDDA711EC9D31400F0F6C0 /* sharedrabundvectors.hpp in Sources */ = {isa = PBXBuildFile; fileRef = 48BDDA6F1EC9D31400F0F6C0 /* sharedrabundvectors.hpp */; };
48BDDA721EC9D31400F0F6C0 /* sharedrabundvectors.hpp in Sources */ = {isa = PBXBuildFile; fileRef = 48BDDA6F1EC9D31400F0F6C0 /* sharedrabundvectors.hpp */; };
48BDDA751ECA067000F0F6C0 /* sharedrabundfloatvectors.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 48BDDA731ECA067000F0F6C0 /* sharedrabundfloatvectors.cpp */; };
48BDDA761ECA067000F0F6C0 /* sharedrabundfloatvectors.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 48BDDA731ECA067000F0F6C0 /* sharedrabundfloatvectors.cpp */; };
48BDDA791ECA3B8E00F0F6C0 /* rabundfloatvector.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 48BDDA771ECA3B8E00F0F6C0 /* rabundfloatvector.cpp */; };
48BDDA7A1ECA3B8E00F0F6C0 /* rabundfloatvector.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 48BDDA771ECA3B8E00F0F6C0 /* rabundfloatvector.cpp */; };
48C1DDC61D25C1BC00B5BA9D /* (null) in Sources */ = {isa = PBXBuildFile; };
48C1DDC71D25C1BC00B5BA9D /* (null) in Sources */ = {isa = PBXBuildFile; };
48C51DF01A76B888004ECDF1 /* fastqread.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 48C51DEF1A76B888004ECDF1 /* fastqread.cpp */; };
48C51DF31A793EFE004ECDF1 /* kmeralign.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 48C51DF11A793EFE004ECDF1 /* kmeralign.cpp */; };
48C728651B66A77800D40830 /* testsequence.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 48C728641B66A77800D40830 /* testsequence.cpp */; };
48C728671B66AB8800D40830 /* pcrseqscommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 481623E11B56A2DB004C60B7 /* pcrseqscommand.cpp */; };
48C7286A1B69598400D40830 /* testmergegroupscommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 48C728681B69598400D40830 /* testmergegroupscommand.cpp */; };
48C728721B6AB3B900D40830 /* testremovegroupscommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 48C7286F1B6AB3B900D40830 /* testremovegroupscommand.cpp */; };
48C728751B6AB4CD00D40830 /* testgetgroupscommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 48C728731B6AB4CD00D40830 /* testgetgroupscommand.cpp */; };
48C728791B728D6B00D40830 /* biominfocommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 48C728771B728D6B00D40830 /* biominfocommand.cpp */; };
48C7287A1B728D6B00D40830 /* biominfocommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 48C728771B728D6B00D40830 /* biominfocommand.cpp */; };
48CF76F021BEBDD300B2FB5C /* mergeotuscommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 48CF76EE21BEBDD300B2FB5C /* mergeotuscommand.cpp */; };
48CF76F121BEBDE000B2FB5C /* mergeotuscommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 48CF76EE21BEBDD300B2FB5C /* mergeotuscommand.cpp */; };
48D36FC924C1EAB0001A0FDC /* (null) in Sources */ = {isa = PBXBuildFile; };
48D6E9681CA42389008DF76B /* testvsearchfileparser.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 48D6E9661CA42389008DF76B /* testvsearchfileparser.cpp */; };
48D6E96B1CA4262A008DF76B /* dataset.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 48D6E9691CA4262A008DF76B /* dataset.cpp */; };
48DB37B31B3B27E000C372A4 /* makefilecommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 48DB37B11B3B27E000C372A4 /* makefilecommand.cpp */; };
48DB37B41B3B27E000C372A4 /* makefilecommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 48DB37B11B3B27E000C372A4 /* makefilecommand.cpp */; };
48E0230324BF488D00BFEA41 /* report.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 48E0230124BF488D00BFEA41 /* report.cpp */; };
48E418561D08893A004C36AB /* (null) in Sources */ = {isa = PBXBuildFile; };
48E543EB1E8F15A500FF6AB8 /* summary.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 4889EA201E8962D50054E0BB /* summary.cpp */; };
48E543EC1E8F15B800FF6AB8 /* opticluster.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 48910D451D58CAD700F60EDB /* opticluster.cpp */; };
48E543ED1E8F15C800FF6AB8 /* optimatrix.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 48910D491D58CBA300F60EDB /* optimatrix.cpp */; };
48E543EE1E92B91100FF6AB8 /* chimeravsearchcommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 48EDB76A1D1320DD00F76E93 /* chimeravsearchcommand.cpp */; };
48E544411E9C292900FF6AB8 /* mcc.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 48E5443F1E9C292900FF6AB8 /* mcc.cpp */; };
48E544421E9C292900FF6AB8 /* mcc.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 48E5443F1E9C292900FF6AB8 /* mcc.cpp */; };
48E544451E9C2B1000FF6AB8 /* sensitivity.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 48E544431E9C2B1000FF6AB8 /* sensitivity.cpp */; };
48E544461E9C2B1000FF6AB8 /* sensitivity.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 48E544431E9C2B1000FF6AB8 /* sensitivity.cpp */; };
48E544491E9C2BE100FF6AB8 /* specificity.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 48E544471E9C2BE100FF6AB8 /* specificity.cpp */; };
48E5444A1E9C2BE100FF6AB8 /* specificity.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 48E544471E9C2BE100FF6AB8 /* specificity.cpp */; };
48E5444D1E9C2C8F00FF6AB8 /* tptn.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 48E5444B1E9C2C8F00FF6AB8 /* tptn.cpp */; };
48E5444E1E9C2C8F00FF6AB8 /* tptn.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 48E5444B1E9C2C8F00FF6AB8 /* tptn.cpp */; };
48E544511E9C2CFD00FF6AB8 /* tp.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 48E5444F1E9C2CFD00FF6AB8 /* tp.cpp */; };
48E544521E9C2CFD00FF6AB8 /* tp.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 48E5444F1E9C2CFD00FF6AB8 /* tp.cpp */; };
48E544551E9C2DF500FF6AB8 /* tn.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 48E544531E9C2DF500FF6AB8 /* tn.cpp */; };
48E544561E9C2DF500FF6AB8 /* tn.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 48E544531E9C2DF500FF6AB8 /* tn.cpp */; };
48E544591E9C2E6500FF6AB8 /* fp.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 48E544571E9C2E6500FF6AB8 /* fp.cpp */; };
48E5445A1E9C2E6500FF6AB8 /* fp.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 48E544571E9C2E6500FF6AB8 /* fp.cpp */; };
48E5445D1E9C2F0F00FF6AB8 /* fn.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 48E5445B1E9C2F0F00FF6AB8 /* fn.cpp */; };
48E5445E1E9C2F0F00FF6AB8 /* fn.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 48E5445B1E9C2F0F00FF6AB8 /* fn.cpp */; };
48E544611E9C2FB800FF6AB8 /* fpfn.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 48E5445F1E9C2FB800FF6AB8 /* fpfn.cpp */; };
48E544621E9C2FB800FF6AB8 /* fpfn.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 48E5445F1E9C2FB800FF6AB8 /* fpfn.cpp */; };
48E5446C1E9D3A8C00FF6AB8 /* f1score.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 48E5446A1E9D3A8C00FF6AB8 /* f1score.cpp */; };
48E5446D1E9D3A8C00FF6AB8 /* f1score.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 48E5446A1E9D3A8C00FF6AB8 /* f1score.cpp */; };
48E544701E9D3B2D00FF6AB8 /* accuracy.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 48E5446E1E9D3B2D00FF6AB8 /* accuracy.cpp */; };
48E544711E9D3B2D00FF6AB8 /* accuracy.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 48E5446E1E9D3B2D00FF6AB8 /* accuracy.cpp */; };
48E544741E9D3C1200FF6AB8 /* ppv.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 48E544721E9D3C1200FF6AB8 /* ppv.cpp */; };
48E544751E9D3C1200FF6AB8 /* ppv.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 48E544721E9D3C1200FF6AB8 /* ppv.cpp */; };
48E544781E9D3CE400FF6AB8 /* npv.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 48E544761E9D3CE400FF6AB8 /* npv.cpp */; };
48E544791E9D3CE400FF6AB8 /* npv.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 48E544761E9D3CE400FF6AB8 /* npv.cpp */; };
48E5447C1E9D3F0400FF6AB8 /* fdr.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 48E5447A1E9D3F0400FF6AB8 /* fdr.cpp */; };
48E5447D1E9D3F0400FF6AB8 /* fdr.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 48E5447A1E9D3F0400FF6AB8 /* fdr.cpp */; };
48E7E0A32278A21B00B74910 /* metrolognormal.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 48E7E0A12278A21B00B74910 /* metrolognormal.cpp */; };
48E7E0A62278AD4800B74910 /* diversityutils.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 48E7E0A42278AD4800B74910 /* diversityutils.cpp */; };
48E981CF189C38FB0042BE9D /* (null) in Sources */ = {isa = PBXBuildFile; };
48ED1E79235E1ACA003E66F7 /* scriptengine.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 48ED1E77235E1ACA003E66F7 /* scriptengine.cpp */; };
48ED1E7A235E1ACA003E66F7 /* scriptengine.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 48ED1E77235E1ACA003E66F7 /* scriptengine.cpp */; };
48ED1E7D235E1BB4003E66F7 /* interactengine.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 48ED1E7B235E1BB4003E66F7 /* interactengine.cpp */; };
48ED1E7E235E1BB4003E66F7 /* interactengine.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 48ED1E7B235E1BB4003E66F7 /* interactengine.cpp */; };
48ED1E81235E1D59003E66F7 /* batchengine.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 48ED1E7F235E1D59003E66F7 /* batchengine.cpp */; };
48ED1E82235E1D59003E66F7 /* batchengine.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 48ED1E7F235E1D59003E66F7 /* batchengine.cpp */; };
48ED1E8523689DE8003E66F7 /* srainfocommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 48ED1E8323689DE8003E66F7 /* srainfocommand.cpp */; };
48ED1E8623689DE8003E66F7 /* srainfocommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 48ED1E8323689DE8003E66F7 /* srainfocommand.cpp */; };
48EDB76C1D1320DD00F76E93 /* chimeravsearchcommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 48EDB76A1D1320DD00F76E93 /* chimeravsearchcommand.cpp */; };
48F06CCD1D74BEC4004A45DD /* testphylotree.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 48F06CCB1D74BEC4004A45DD /* testphylotree.cpp */; };
48F1C16623D606050034DAAF /* makeclrcommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 48F1C16423D606050034DAAF /* makeclrcommand.cpp */; };
48F1C16723D606050034DAAF /* makeclrcommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 48F1C16423D606050034DAAF /* makeclrcommand.cpp */; };
48F1C16A23D78D7B0034DAAF /* sharedclrvectors.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 48F1C16823D78D7B0034DAAF /* sharedclrvectors.cpp */; };
48F1C16B23D78D7B0034DAAF /* sharedclrvectors.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 48F1C16823D78D7B0034DAAF /* sharedclrvectors.cpp */; };
48F1C16E23D78F8D0034DAAF /* sharedclrvector.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 48F1C16C23D78F8D0034DAAF /* sharedclrvector.cpp */; };
48F1C16F23D78F8D0034DAAF /* sharedclrvector.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 48F1C16C23D78F8D0034DAAF /* sharedclrvector.cpp */; };
48F98E4D1A9CFD670005E81B /* completelinkage.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 48F98E4C1A9CFD670005E81B /* completelinkage.cpp */; };
48FB99C5209B69FA00FF9F6E /* optirefmatrix.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 48FB99C3209B69FA00FF9F6E /* optirefmatrix.cpp */; };
48FB99C920A48EF700FF9F6E /* optidata.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 48FB99C720A48EF700FF9F6E /* optidata.cpp */; };
48FB99CC20A4AD7D00FF9F6E /* optiblastmatrix.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 48FB99CA20A4AD7D00FF9F6E /* optiblastmatrix.cpp */; };
48FB99CF20A4F3FB00FF9F6E /* optifitcluster.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 48FB99CD20A4F3FB00FF9F6E /* optifitcluster.cpp */; };
7E6BE10A12F710D8007ADDBE /* refchimeratest.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 7E6BE10912F710D8007ADDBE /* refchimeratest.cpp */; };
835FE03D19F00640005AA754 /* classifysvmsharedcommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 7B2181FE17AD777B00286E6A /* classifysvmsharedcommand.cpp */; };
835FE03E19F00A4D005AA754 /* svm.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 7B21820117AD77BD00286E6A /* svm.cpp */; };
A70056E6156A93D000924A2D /* getotuscommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A70056E5156A93D000924A2D /* getotuscommand.cpp */; };
A70056EB156AB6E500924A2D /* removeotuscommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A70056EA156AB6E500924A2D /* removeotuscommand.cpp */; };
A70332B712D3A13400761E33 /* Makefile in Sources */ = {isa = PBXBuildFile; fileRef = A70332B512D3A13400761E33 /* Makefile */; };
A7128B1D16B7002A00723BE4 /* getdistscommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7128B1C16B7002600723BE4 /* getdistscommand.cpp */; };
A7132EB3184E792700AAA402 /* communitytype.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7132EB2184E792700AAA402 /* communitytype.cpp */; };
A713EBAC12DC7613000092AC /* readphylipvector.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A713EBAB12DC7613000092AC /* readphylipvector.cpp */; };
A713EBED12DC7C5E000092AC /* nmdscommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A713EBEC12DC7C5E000092AC /* nmdscommand.cpp */; };
A7190B221768E0DF00A9AFA6 /* lefsecommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7190B201768E0DF00A9AFA6 /* lefsecommand.cpp */; };
A71CB160130B04A2001E7287 /* anosimcommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A71CB15E130B04A2001E7287 /* anosimcommand.cpp */; };
A71FE12C12EDF72400963CA7 /* mergegroupscommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A71FE12B12EDF72400963CA7 /* mergegroupscommand.cpp */; };
A721AB6A161C570F009860A1 /* alignnode.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A721AB66161C570F009860A1 /* alignnode.cpp */; };
A721AB6B161C570F009860A1 /* aligntree.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A721AB68161C570F009860A1 /* aligntree.cpp */; };
A721AB71161C572A009860A1 /* kmernode.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A721AB6D161C572A009860A1 /* kmernode.cpp */; };
A721AB72161C572A009860A1 /* kmertree.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A721AB6F161C572A009860A1 /* kmertree.cpp */; };
A721AB77161C573B009860A1 /* taxonomynode.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A721AB73161C573B009860A1 /* taxonomynode.cpp */; };
A7222D731856277C0055A993 /* sharedjsd.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7222D721856277C0055A993 /* sharedjsd.cpp */; };
A724D2B7153C8628000A826F /* makebiomcommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A724D2B6153C8628000A826F /* makebiomcommand.cpp */; };
A727864412E9E28C00F86ABA /* removerarecommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A727864312E9E28C00F86ABA /* removerarecommand.cpp */; };
A73DDC3813C4BF64006AAE38 /* mothurmetastats.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A73DDC3713C4BF64006AAE38 /* mothurmetastats.cpp */; };
A741744C175CD9B1007DF49B /* makelefsecommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A741744A175CD9B1007DF49B /* makelefsecommand.cpp */; };
A741FAD215D1688E0067BCC5 /* sequencecountparser.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A741FAD115D1688E0067BCC5 /* sequencecountparser.cpp */; };
A747EC71181EA0F900345732 /* sracommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A747EC70181EA0F900345732 /* sracommand.cpp */; };
A7496D2E167B531B00CC7D7C /* kruskalwalliscommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7496D2C167B531B00CC7D7C /* kruskalwalliscommand.cpp */; };
A74C06E916A9C0A9008390A3 /* primerdesigncommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A74C06E816A9C0A8008390A3 /* primerdesigncommand.cpp */; };
A74D36B8137DAFAA00332B0C /* chimerauchimecommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A74D36B7137DAFAA00332B0C /* chimerauchimecommand.cpp */; };
A74D59A4159A1E2000043046 /* counttable.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A74D59A3159A1E2000043046 /* counttable.cpp */; };
A754149714840CF7005850D1 /* summaryqualcommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A754149614840CF7005850D1 /* summaryqualcommand.cpp */; };
A7548FAD17142EBC00B1F05A /* getmetacommunitycommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7548FAC17142EBC00B1F05A /* getmetacommunitycommand.cpp */; };
A7548FB0171440ED00B1F05A /* qFinderDMM.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7548FAE171440EC00B1F05A /* qFinderDMM.cpp */; };
A75790591301749D00A30DAB /* homovacommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A75790581301749D00A30DAB /* homovacommand.cpp */; };
A7730EFF13967241007433A3 /* countseqscommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7730EFE13967241007433A3 /* countseqscommand.cpp */; };
A774101414695AF60098E6AC /* shhhseqscommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A774101314695AF60098E6AC /* shhhseqscommand.cpp */; };
A774104814696F320098E6AC /* myseqdist.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A774104614696F320098E6AC /* myseqdist.cpp */; };
A77410F614697C300098E6AC /* seqnoise.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A77410F414697C300098E6AC /* seqnoise.cpp */; };
A77916E8176F7F7600EEFE18 /* designmap.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A77916E6176F7F7600EEFE18 /* designmap.cpp */; };
A77A221F139001B600B0BE70 /* deuniquetreecommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A77A221E139001B600B0BE70 /* deuniquetreecommand.cpp */; };
A77B7185173D2240002163C2 /* sparcccommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A77B7184173D2240002163C2 /* sparcccommand.cpp */; };
A77B718B173D40E5002163C2 /* calcsparcc.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A77B7189173D40E4002163C2 /* calcsparcc.cpp */; };
A77EBD2F1523709100ED407C /* createdatabasecommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A77EBD2E1523709100ED407C /* createdatabasecommand.cpp */; };
A7876A26152A017C00A0AE86 /* subsample.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7876A25152A017C00A0AE86 /* subsample.cpp */; };
A79234D713C74BF6002B08E2 /* mothurfisher.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A79234D613C74BF6002B08E2 /* mothurfisher.cpp */; };
A795840D13F13CD900F201D5 /* countgroupscommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A795840C13F13CD900F201D5 /* countgroupscommand.cpp */; };
A799314B16CBD0CD0017E888 /* mergetaxsummarycommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A799314A16CBD0CD0017E888 /* mergetaxsummarycommand.cpp */; };
A799F5B91309A3E000AEEFA0 /* makefastqcommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A799F5B81309A3E000AEEFA0 /* makefastqcommand.cpp */; };
A79EEF8616971D4A0006DEC1 /* filtersharedcommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A79EEF8516971D4A0006DEC1 /* filtersharedcommand.cpp */; };
A7A0671A1562946F0095C8C5 /* listotuscommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7A067191562946F0095C8C5 /* listotuscommand.cpp */; };
A7A0671F1562AC3E0095C8C5 /* makecontigscommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7A0671E1562AC3E0095C8C5 /* makecontigscommand.cpp */; };
A7A09B1018773C0E00FAA081 /* shannonrange.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7A09B0F18773C0E00FAA081 /* shannonrange.cpp */; };
A7A32DAA14DC43B00001D2E5 /* sortseqscommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7A32DA914DC43B00001D2E5 /* sortseqscommand.cpp */; };
A7A3C8C914D041AD00B1BFBE /* otuassociationcommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7A3C8C714D041AD00B1BFBE /* otuassociationcommand.cpp */; };
A7A61F2D130062E000E05B6B /* amovacommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7A61F2C130062E000E05B6B /* amovacommand.cpp */; };
A7B0231516B8244C006BA09E /* removedistscommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7B0231416B8244B006BA09E /* removedistscommand.cpp */; };
A7B093C018579F0400843CD1 /* pam.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7B093BF18579F0400843CD1 /* pam.cpp */; };
A7BF221414587886000AD524 /* myPerseus.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7BF221214587886000AD524 /* myPerseus.cpp */; };
A7BF2232145879B2000AD524 /* chimeraperseuscommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7BF2231145879B2000AD524 /* chimeraperseuscommand.cpp */; };
A7C3DC0B14FE457500FE1924 /* cooccurrencecommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7C3DC0914FE457500FE1924 /* cooccurrencecommand.cpp */; };
A7C3DC0F14FE469500FE1924 /* trialSwap2.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7C3DC0D14FE469500FE1924 /* trialSwap2.cpp */; };
A7C7DAB915DA758B0059B0CF /* sffmultiplecommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7C7DAB815DA758B0059B0CF /* sffmultiplecommand.cpp */; };
A7CFA4311755401800D9ED4D /* renameseqscommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7CFA4301755401800D9ED4D /* renameseqscommand.cpp */; };
A7D395C4184FA3A200A350D7 /* kmeans.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7D395C3184FA3A200A350D7 /* kmeans.cpp */; };
A7D755DA1535F679009BF21A /* treereader.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7D755D91535F679009BF21A /* treereader.cpp */; };
A7D9378A17B146B5001E90B0 /* wilcox.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7D9378917B146B5001E90B0 /* wilcox.cpp */; };
A7E0243D15B4520A00A5F046 /* sparsedistancematrix.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E0243C15B4520A00A5F046 /* sparsedistancematrix.cpp */; };
A7E6F69E17427D06006775E2 /* makelookupcommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E6F69D17427D06006775E2 /* makelookupcommand.cpp */; };
A7E9B88112D37EC400DA6239 /* ace.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B64F12D37EC300DA6239 /* ace.cpp */; };
A7E9B88212D37EC400DA6239 /* aligncommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B65112D37EC300DA6239 /* aligncommand.cpp */; };
A7E9B88312D37EC400DA6239 /* alignment.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B65312D37EC300DA6239 /* alignment.cpp */; };
A7E9B88412D37EC400DA6239 /* alignmentcell.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B65512D37EC300DA6239 /* alignmentcell.cpp */; };
A7E9B88512D37EC400DA6239 /* alignmentdb.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B65712D37EC300DA6239 /* alignmentdb.cpp */; };
A7E9B88712D37EC400DA6239 /* bayesian.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B65A12D37EC300DA6239 /* bayesian.cpp */; };
A7E9B88812D37EC400DA6239 /* bellerophon.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B65C12D37EC300DA6239 /* bellerophon.cpp */; };
A7E9B88912D37EC400DA6239 /* bergerparker.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B65E12D37EC300DA6239 /* bergerparker.cpp */; };
A7E9B88A12D37EC400DA6239 /* binsequencecommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B66012D37EC300DA6239 /* binsequencecommand.cpp */; };
A7E9B88D12D37EC400DA6239 /* boneh.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B66612D37EC400DA6239 /* boneh.cpp */; };
A7E9B88E12D37EC400DA6239 /* bootstrap.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B66812D37EC400DA6239 /* bootstrap.cpp */; };
A7E9B89012D37EC400DA6239 /* bstick.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B66C12D37EC400DA6239 /* bstick.cpp */; };
A7E9B89212D37EC400DA6239 /* canberra.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B67012D37EC400DA6239 /* canberra.cpp */; };
A7E9B89412D37EC400DA6239 /* ccode.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B67412D37EC400DA6239 /* ccode.cpp */; };
A7E9B89512D37EC400DA6239 /* chao1.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B67612D37EC400DA6239 /* chao1.cpp */; };
A7E9B89612D37EC400DA6239 /* mothurchimera.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B67812D37EC400DA6239 /* mothurchimera.cpp */; };
A7E9B89712D37EC400DA6239 /* chimerabellerophoncommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B67A12D37EC400DA6239 /* chimerabellerophoncommand.cpp */; };
A7E9B89812D37EC400DA6239 /* chimeraccodecommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B67C12D37EC400DA6239 /* chimeraccodecommand.cpp */; };
A7E9B89912D37EC400DA6239 /* chimeracheckcommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B67E12D37EC400DA6239 /* chimeracheckcommand.cpp */; };
A7E9B89A12D37EC400DA6239 /* chimeracheckrdp.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B68012D37EC400DA6239 /* chimeracheckrdp.cpp */; };
A7E9B89B12D37EC400DA6239 /* chimerapintailcommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B68212D37EC400DA6239 /* chimerapintailcommand.cpp */; };
A7E9B89C12D37EC400DA6239 /* chimerarealigner.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B68412D37EC400DA6239 /* chimerarealigner.cpp */; };
A7E9B89E12D37EC400DA6239 /* chimeraslayer.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B68812D37EC400DA6239 /* chimeraslayer.cpp */; };
A7E9B89F12D37EC400DA6239 /* chimeraslayercommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B68A12D37EC400DA6239 /* chimeraslayercommand.cpp */; };
A7E9B8A012D37EC400DA6239 /* chopseqscommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B68C12D37EC400DA6239 /* chopseqscommand.cpp */; };
A7E9B8A112D37EC400DA6239 /* classify.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B68E12D37EC400DA6239 /* classify.cpp */; };
A7E9B8A212D37EC400DA6239 /* classifyotucommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B69012D37EC400DA6239 /* classifyotucommand.cpp */; };
A7E9B8A312D37EC400DA6239 /* classifyseqscommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B69212D37EC400DA6239 /* classifyseqscommand.cpp */; };
A7E9B8A412D37EC400DA6239 /* clearcut.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B69412D37EC400DA6239 /* clearcut.cpp */; };
A7E9B8A512D37EC400DA6239 /* clearcutcommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B69612D37EC400DA6239 /* clearcutcommand.cpp */; };
A7E9B8A612D37EC400DA6239 /* cluster.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B69812D37EC400DA6239 /* cluster.cpp */; };
A7E9B8A712D37EC400DA6239 /* clusterclassic.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B69A12D37EC400DA6239 /* clusterclassic.cpp */; };
A7E9B8A812D37EC400DA6239 /* clustercommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B69C12D37EC400DA6239 /* clustercommand.cpp */; };
A7E9B8A912D37EC400DA6239 /* clusterdoturcommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B69E12D37EC400DA6239 /* clusterdoturcommand.cpp */; };
A7E9B8AA12D37EC400DA6239 /* clusterfragmentscommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B6A012D37EC400DA6239 /* clusterfragmentscommand.cpp */; };
A7E9B8AB12D37EC400DA6239 /* clustersplitcommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B6A212D37EC400DA6239 /* clustersplitcommand.cpp */; };
A7E9B8AC12D37EC400DA6239 /* cmdargs.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B6A412D37EC400DA6239 /* cmdargs.cpp */; };
A7E9B8AD12D37EC400DA6239 /* collect.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B6A612D37EC400DA6239 /* collect.cpp */; };
A7E9B8AE12D37EC400DA6239 /* collectcommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B6A812D37EC400DA6239 /* collectcommand.cpp */; };
A7E9B8AF12D37EC400DA6239 /* collectsharedcommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B6AC12D37EC400DA6239 /* collectsharedcommand.cpp */; };
A7E9B8B012D37EC400DA6239 /* commandfactory.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B6AF12D37EC400DA6239 /* commandfactory.cpp */; };
A7E9B8B112D37EC400DA6239 /* commandoptionparser.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B6B112D37EC400DA6239 /* commandoptionparser.cpp */; };
A7E9B8B312D37EC400DA6239 /* consensus.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B6B512D37EC400DA6239 /* consensus.cpp */; };
A7E9B8B412D37EC400DA6239 /* consensusseqscommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B6B712D37EC400DA6239 /* consensusseqscommand.cpp */; };
A7E9B8B512D37EC400DA6239 /* corraxescommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B6B912D37EC400DA6239 /* corraxescommand.cpp */; };
A7E9B8B612D37EC400DA6239 /* coverage.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B6BB12D37EC400DA6239 /* coverage.cpp */; };
A7E9B8B812D37EC400DA6239 /* decalc.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B6C112D37EC400DA6239 /* decalc.cpp */; };
A7E9B8B912D37EC400DA6239 /* uniqueseqscommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B6C312D37EC400DA6239 /* uniqueseqscommand.cpp */; };
A7E9B8BA12D37EC400DA6239 /* degapseqscommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B6C512D37EC400DA6239 /* degapseqscommand.cpp */; };
A7E9B8BB12D37EC400DA6239 /* deuniqueseqscommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B6C712D37EC400DA6239 /* deuniqueseqscommand.cpp */; };
A7E9B8BC12D37EC400DA6239 /* distancecommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B6CB12D37EC400DA6239 /* distancecommand.cpp */; };
A7E9B8BD12D37EC400DA6239 /* distancedb.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B6CD12D37EC400DA6239 /* distancedb.cpp */; };
A7E9B8BE12D37EC400DA6239 /* distclearcut.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B6CF12D37EC400DA6239 /* distclearcut.cpp */; };
A7E9B8BF12D37EC400DA6239 /* dlibshuff.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B6D112D37EC400DA6239 /* dlibshuff.cpp */; };
A7E9B8C012D37EC400DA6239 /* dmat.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B6D312D37EC400DA6239 /* dmat.cpp */; };
A7E9B8C112D37EC400DA6239 /* efron.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B6D712D37EC400DA6239 /* efron.cpp */; };
A7E9B8C312D37EC400DA6239 /* fasta.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B6DC12D37EC400DA6239 /* fasta.cpp */; };
A7E9B8C412D37EC400DA6239 /* fastamap.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B6DE12D37EC400DA6239 /* fastamap.cpp */; };
A7E9B8C512D37EC400DA6239 /* fileoutput.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B6E012D37EC400DA6239 /* fileoutput.cpp */; };
A7E9B8C612D37EC400DA6239 /* filterseqscommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B6E312D37EC400DA6239 /* filterseqscommand.cpp */; };
A7E9B8C812D37EC400DA6239 /* flowdata.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B6E712D37EC400DA6239 /* flowdata.cpp */; };
A7E9B8CB12D37EC400DA6239 /* fullmatrix.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B6EE12D37EC400DA6239 /* fullmatrix.cpp */; };
A7E9B8CC12D37EC400DA6239 /* geom.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B6F012D37EC400DA6239 /* geom.cpp */; };
A7E9B8CD12D37EC400DA6239 /* getgroupcommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B6F212D37EC400DA6239 /* getgroupcommand.cpp */; };
A7E9B8CE12D37EC400DA6239 /* getgroupscommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B6F412D37EC400DA6239 /* getgroupscommand.cpp */; };
A7E9B8CF12D37EC400DA6239 /* getlabelcommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B6F612D37EC400DA6239 /* getlabelcommand.cpp */; };
A7E9B8D012D37EC400DA6239 /* getlineagecommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B6F812D37EC400DA6239 /* getlineagecommand.cpp */; };
A7E9B8D112D37EC400DA6239 /* getlistcountcommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B6FA12D37EC400DA6239 /* getlistcountcommand.cpp */; };
A7E9B8D212D37EC400DA6239 /* getopt_long.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B6FC12D37EC400DA6239 /* getopt_long.cpp */; };
A7E9B8D312D37EC400DA6239 /* getoturepcommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B6FE12D37EC400DA6239 /* getoturepcommand.cpp */; };
A7E9B8D512D37EC400DA6239 /* getrabundcommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B70212D37EC400DA6239 /* getrabundcommand.cpp */; };
A7E9B8D612D37EC400DA6239 /* getrelabundcommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B70412D37EC400DA6239 /* getrelabundcommand.cpp */; };
A7E9B8D712D37EC400DA6239 /* getsabundcommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B70612D37EC400DA6239 /* getsabundcommand.cpp */; };
A7E9B8D812D37EC400DA6239 /* getseqscommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B70812D37EC400DA6239 /* getseqscommand.cpp */; };
A7E9B8D912D37EC400DA6239 /* getsharedotucommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B70A12D37EC400DA6239 /* getsharedotucommand.cpp */; };
A7E9B8DB12D37EC400DA6239 /* goodscoverage.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B70E12D37EC400DA6239 /* goodscoverage.cpp */; };
A7E9B8DC12D37EC400DA6239 /* gotohoverlap.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B71012D37EC400DA6239 /* gotohoverlap.cpp */; };
A7E9B8DD12D37EC400DA6239 /* gower.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B71212D37EC400DA6239 /* gower.cpp */; };
A7E9B8DE12D37EC400DA6239 /* groupmap.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B71412D37EC400DA6239 /* groupmap.cpp */; };
A7E9B8DF12D37EC400DA6239 /* hamming.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B71612D37EC400DA6239 /* hamming.cpp */; };
A7E9B8E212D37EC400DA6239 /* heatmap.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B71C12D37EC400DA6239 /* heatmap.cpp */; };
A7E9B8E312D37EC400DA6239 /* heatmapcommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B71E12D37EC400DA6239 /* heatmapcommand.cpp */; };
A7E9B8E412D37EC400DA6239 /* heatmapsim.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B72012D37EC400DA6239 /* heatmapsim.cpp */; };
A7E9B8E512D37EC400DA6239 /* heatmapsimcommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B72212D37EC400DA6239 /* heatmapsimcommand.cpp */; };
A7E9B8E612D37EC400DA6239 /* heip.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B72412D37EC400DA6239 /* heip.cpp */; };
A7E9B8E712D37EC400DA6239 /* hellinger.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B72612D37EC400DA6239 /* hellinger.cpp */; };
A7E9B8E812D37EC400DA6239 /* helpcommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B72812D37EC400DA6239 /* helpcommand.cpp */; };
A7E9B8E912D37EC400DA6239 /* indicatorcommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B72B12D37EC400DA6239 /* indicatorcommand.cpp */; };
A7E9B8EA12D37EC400DA6239 /* inputdata.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B72D12D37EC400DA6239 /* inputdata.cpp */; };
A7E9B8EB12D37EC400DA6239 /* invsimpson.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B72F12D37EC400DA6239 /* invsimpson.cpp */; };
A7E9B8EC12D37EC400DA6239 /* jackknife.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B73112D37EC400DA6239 /* jackknife.cpp */; };
A7E9B8ED12D37EC400DA6239 /* kmer.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B73312D37EC400DA6239 /* kmer.cpp */; };
A7E9B8EE12D37EC400DA6239 /* kmerdb.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B73512D37EC400DA6239 /* kmerdb.cpp */; };
A7E9B8EF12D37EC400DA6239 /* knn.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B73712D37EC400DA6239 /* knn.cpp */; };
A7E9B8F012D37EC400DA6239 /* libshuff.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B73912D37EC400DA6239 /* libshuff.cpp */; };
A7E9B8F112D37EC400DA6239 /* libshuffcommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B73B12D37EC400DA6239 /* libshuffcommand.cpp */; };
A7E9B8F212D37EC400DA6239 /* listseqscommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B73D12D37EC400DA6239 /* listseqscommand.cpp */; };
A7E9B8F312D37EC400DA6239 /* listvector.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B73F12D37EC400DA6239 /* listvector.cpp */; };
A7E9B8F412D37EC400DA6239 /* logsd.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B74112D37EC400DA6239 /* logsd.cpp */; };
A7E9B8F512D37EC400DA6239 /* makegroupcommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B74312D37EC400DA6239 /* makegroupcommand.cpp */; };
A7E9B8F612D37EC400DA6239 /* maligner.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B74512D37EC400DA6239 /* maligner.cpp */; };
A7E9B8F712D37EC400DA6239 /* manhattan.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B74712D37EC400DA6239 /* manhattan.cpp */; };
A7E9B8F812D37EC400DA6239 /* distsharedcommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B74912D37EC400DA6239 /* distsharedcommand.cpp */; };
A7E9B8F912D37EC400DA6239 /* memchi2.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B74B12D37EC400DA6239 /* memchi2.cpp */; };
A7E9B8FA12D37EC400DA6239 /* memchord.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B74D12D37EC400DA6239 /* memchord.cpp */; };
A7E9B8FB12D37EC400DA6239 /* memeuclidean.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B74F12D37EC400DA6239 /* memeuclidean.cpp */; };
A7E9B8FC12D37EC400DA6239 /* mempearson.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B75112D37EC400DA6239 /* mempearson.cpp */; };
A7E9B8FD12D37EC400DA6239 /* mergefilecommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B75312D37EC400DA6239 /* mergefilecommand.cpp */; };
A7E9B8FF12D37EC400DA6239 /* metastatscommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B75712D37EC400DA6239 /* metastatscommand.cpp */; };
A7E9B90012D37EC400DA6239 /* mgclustercommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B75912D37EC400DA6239 /* mgclustercommand.cpp */; };
A7E9B90112D37EC400DA6239 /* mothur.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B75B12D37EC400DA6239 /* mothur.cpp */; };
A7E9B90212D37EC400DA6239 /* mothurout.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B75D12D37EC400DA6239 /* mothurout.cpp */; };
A7E9B90312D37EC400DA6239 /* nameassignment.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B75F12D37EC400DA6239 /* nameassignment.cpp */; };
A7E9B90412D37EC400DA6239 /* nast.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B76112D37EC400DA6239 /* nast.cpp */; };
A7E9B90512D37EC400DA6239 /* alignreport.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B76312D37EC400DA6239 /* alignreport.cpp */; };
A7E9B90612D37EC400DA6239 /* needlemanoverlap.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B76512D37EC400DA6239 /* needlemanoverlap.cpp */; };
A7E9B90712D37EC400DA6239 /* noalign.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B76712D37EC400DA6239 /* noalign.cpp */; };
A7E9B90812D37EC400DA6239 /* nocommands.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B76912D37EC400DA6239 /* nocommands.cpp */; };
A7E9B90912D37EC400DA6239 /* normalizesharedcommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B76B12D37EC400DA6239 /* normalizesharedcommand.cpp */; };
A7E9B90A12D37EC400DA6239 /* npshannon.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B76D12D37EC400DA6239 /* npshannon.cpp */; };
A7E9B90B12D37EC400DA6239 /* odum.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B77112D37EC400DA6239 /* odum.cpp */; };
A7E9B90C12D37EC400DA6239 /* optionparser.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B77512D37EC400DA6239 /* optionparser.cpp */; };
A7E9B90D12D37EC400DA6239 /* ordervector.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B77712D37EC400DA6239 /* ordervector.cpp */; };
A7E9B90E12D37EC400DA6239 /* otuhierarchycommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B77912D37EC400DA6239 /* otuhierarchycommand.cpp */; };
A7E9B90F12D37EC400DA6239 /* overlap.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B77B12D37EC400DA6239 /* overlap.cpp */; };
A7E9B91012D37EC400DA6239 /* pairwiseseqscommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B77D12D37EC400DA6239 /* pairwiseseqscommand.cpp */; };
A7E9B91112D37EC400DA6239 /* fastaqinfocommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B77F12D37EC400DA6239 /* fastaqinfocommand.cpp */; };
A7E9B91312D37EC400DA6239 /* parsimony.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B78312D37EC400DA6239 /* parsimony.cpp */; };
A7E9B91412D37EC400DA6239 /* parsimonycommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B78512D37EC400DA6239 /* parsimonycommand.cpp */; };
A7E9B91512D37EC400DA6239 /* pcoacommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B78712D37EC400DA6239 /* pcoacommand.cpp */; };
A7E9B91712D37EC400DA6239 /* phylodiversitycommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B78B12D37EC400DA6239 /* phylodiversitycommand.cpp */; };
A7E9B91812D37EC400DA6239 /* phylosummary.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B78D12D37EC400DA6239 /* phylosummary.cpp */; };
A7E9B91912D37EC400DA6239 /* phylotree.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B78F12D37EC400DA6239 /* phylotree.cpp */; };
A7E9B91A12D37EC400DA6239 /* phylotypecommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B79112D37EC400DA6239 /* phylotypecommand.cpp */; };
A7E9B91B12D37EC400DA6239 /* pintail.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B79312D37EC400DA6239 /* pintail.cpp */; };
A7E9B91D12D37EC400DA6239 /* preclustercommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B79712D37EC400DA6239 /* preclustercommand.cpp */; };
A7E9B91E12D37EC400DA6239 /* prng.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B79912D37EC400DA6239 /* prng.cpp */; };
A7E9B92012D37EC400DA6239 /* qstat.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B79D12D37EC400DA6239 /* qstat.cpp */; };
A7E9B92112D37EC400DA6239 /* qualityscores.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B79F12D37EC400DA6239 /* qualityscores.cpp */; };
A7E9B92212D37EC400DA6239 /* quitcommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B7A112D37EC400DA6239 /* quitcommand.cpp */; };
A7E9B92312D37EC400DA6239 /* rabundvector.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B7A312D37EC400DA6239 /* rabundvector.cpp */; };
A7E9B92512D37EC400DA6239 /* raredisplay.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B7A712D37EC400DA6239 /* raredisplay.cpp */; };
A7E9B92612D37EC400DA6239 /* rarefact.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B7A912D37EC400DA6239 /* rarefact.cpp */; };
A7E9B92712D37EC400DA6239 /* rarefactcommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B7AB12D37EC400DA6239 /* rarefactcommand.cpp */; };
A7E9B92812D37EC400DA6239 /* rarefactsharedcommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B7AE12D37EC400DA6239 /* rarefactsharedcommand.cpp */; };
A7E9B92912D37EC400DA6239 /* readblast.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B7B012D37EC400DA6239 /* readblast.cpp */; };
A7E9B92A12D37EC400DA6239 /* readcluster.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B7B212D37EC400DA6239 /* readcluster.cpp */; };
A7E9B92B12D37EC400DA6239 /* readcolumn.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B7B412D37EC400DA6239 /* readcolumn.cpp */; };
A7E9B92F12D37EC400DA6239 /* readphylip.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B7BD12D37EC400DA6239 /* readphylip.cpp */; };
A7E9B93012D37EC400DA6239 /* readtree.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B7BF12D37EC400DA6239 /* readtree.cpp */; };
A7E9B93212D37EC400DA6239 /* removegroupscommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B7C312D37EC400DA6239 /* removegroupscommand.cpp */; };
A7E9B93312D37EC400DA6239 /* removelineagecommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B7C512D37EC400DA6239 /* removelineagecommand.cpp */; };
A7E9B93512D37EC400DA6239 /* removeseqscommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B7C912D37EC400DA6239 /* removeseqscommand.cpp */; };
A7E9B93712D37EC400DA6239 /* reversecommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B7CD12D37EC400DA6239 /* reversecommand.cpp */; };
A7E9B93812D37EC400DA6239 /* sabundvector.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B7CF12D37EC400DA6239 /* sabundvector.cpp */; };
A7E9B93912D37EC400DA6239 /* screenseqscommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B7D112D37EC400DA6239 /* screenseqscommand.cpp */; };
A7E9B93A12D37EC400DA6239 /* aligncheckcommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B7D312D37EC400DA6239 /* aligncheckcommand.cpp */; };
A7E9B93B12D37EC400DA6239 /* sensspeccommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B7D512D37EC400DA6239 /* sensspeccommand.cpp */; };
A7E9B93C12D37EC400DA6239 /* seqerrorcommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B7D712D37EC400DA6239 /* seqerrorcommand.cpp */; };
A7E9B93D12D37EC400DA6239 /* seqsummarycommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B7D912D37EC400DA6239 /* seqsummarycommand.cpp */; };
A7E9B93E12D37EC400DA6239 /* sequence.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B7DB12D37EC400DA6239 /* sequence.cpp */; };
A7E9B93F12D37EC400DA6239 /* sequencedb.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B7DD12D37EC400DA6239 /* sequencedb.cpp */; };
A7E9B94012D37EC400DA6239 /* setdircommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B7DF12D37EC400DA6239 /* setdircommand.cpp */; };
A7E9B94112D37EC400DA6239 /* setlogfilecommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B7E112D37EC400DA6239 /* setlogfilecommand.cpp */; };
A7E9B94212D37EC400DA6239 /* sffinfocommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B7E312D37EC400DA6239 /* sffinfocommand.cpp */; };
A7E9B94312D37EC400DA6239 /* shannon.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B7E512D37EC400DA6239 /* shannon.cpp */; };
A7E9B94412D37EC400DA6239 /* shannoneven.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B7E712D37EC400DA6239 /* shannoneven.cpp */; };
A7E9B94512D37EC400DA6239 /* sharedace.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B7E912D37EC400DA6239 /* sharedace.cpp */; };
A7E9B94612D37EC400DA6239 /* sharedanderbergs.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B7EC12D37EC400DA6239 /* sharedanderbergs.cpp */; };
A7E9B94712D37EC400DA6239 /* sharedbraycurtis.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B7EE12D37EC400DA6239 /* sharedbraycurtis.cpp */; };
A7E9B94812D37EC400DA6239 /* sharedchao1.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B7F012D37EC400DA6239 /* sharedchao1.cpp */; };
A7E9B94912D37EC400DA6239 /* makesharedcommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B7F212D37EC400DA6239 /* makesharedcommand.cpp */; };
A7E9B94A12D37EC400DA6239 /* sharedjabund.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B7F412D37EC400DA6239 /* sharedjabund.cpp */; };
A7E9B94B12D37EC400DA6239 /* sharedjackknife.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B7F612D37EC400DA6239 /* sharedjackknife.cpp */; };
A7E9B94C12D37EC400DA6239 /* sharedjclass.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B7F812D37EC400DA6239 /* sharedjclass.cpp */; };
A7E9B94D12D37EC400DA6239 /* sharedjest.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B7FA12D37EC400DA6239 /* sharedjest.cpp */; };
A7E9B94E12D37EC400DA6239 /* sharedkstest.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B7FC12D37EC400DA6239 /* sharedkstest.cpp */; };
A7E9B94F12D37EC400DA6239 /* sharedkulczynski.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B7FE12D37EC400DA6239 /* sharedkulczynski.cpp */; };
A7E9B95012D37EC400DA6239 /* sharedkulczynskicody.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B80012D37EC400DA6239 /* sharedkulczynskicody.cpp */; };
A7E9B95112D37EC400DA6239 /* sharedlennon.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B80212D37EC400DA6239 /* sharedlennon.cpp */; };
A7E9B95212D37EC400DA6239 /* sharedlistvector.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B80412D37EC400DA6239 /* sharedlistvector.cpp */; };
A7E9B95312D37EC400DA6239 /* sharedmarczewski.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B80612D37EC400DA6239 /* sharedmarczewski.cpp */; };
A7E9B95412D37EC400DA6239 /* sharedmorisitahorn.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B80812D37EC400DA6239 /* sharedmorisitahorn.cpp */; };
A7E9B95512D37EC400DA6239 /* sharedochiai.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B80B12D37EC400DA6239 /* sharedochiai.cpp */; };
A7E9B95612D37EC400DA6239 /* sharedordervector.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B80D12D37EC400DA6239 /* sharedordervector.cpp */; };
A7E9B95A12D37EC400DA6239 /* sharedsobs.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B81512D37EC400DA6239 /* sharedsobs.cpp */; };
A7E9B95B12D37EC400DA6239 /* sharedsobscollectsummary.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B81712D37EC400DA6239 /* sharedsobscollectsummary.cpp */; };
A7E9B95C12D37EC400DA6239 /* sharedsorabund.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B81912D37EC400DA6239 /* sharedsorabund.cpp */; };
A7E9B95D12D37EC400DA6239 /* sharedsorclass.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B81B12D37EC400DA6239 /* sharedsorclass.cpp */; };
A7E9B95E12D37EC400DA6239 /* sharedsorest.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B81D12D37EC400DA6239 /* sharedsorest.cpp */; };
A7E9B95F12D37EC400DA6239 /* sharedthetan.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B81F12D37EC400DA6239 /* sharedthetan.cpp */; };
A7E9B96012D37EC400DA6239 /* sharedthetayc.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B82112D37EC400DA6239 /* sharedthetayc.cpp */; };
A7E9B96212D37EC400DA6239 /* shen.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B82512D37EC400DA6239 /* shen.cpp */; };
A7E9B96312D37EC400DA6239 /* shhhercommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B82712D37EC400DA6239 /* shhhercommand.cpp */; };
A7E9B96412D37EC400DA6239 /* simpson.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B82912D37EC400DA6239 /* simpson.cpp */; };
A7E9B96512D37EC400DA6239 /* simpsoneven.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B82B12D37EC400DA6239 /* simpsoneven.cpp */; };
A7E9B96612D37EC400DA6239 /* singlelinkage.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B82D12D37EC400DA6239 /* singlelinkage.cpp */; };
A7E9B96712D37EC400DA6239 /* slayer.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B82E12D37EC400DA6239 /* slayer.cpp */; };
A7E9B96812D37EC400DA6239 /* slibshuff.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B83012D37EC400DA6239 /* slibshuff.cpp */; };
A7E9B96912D37EC400DA6239 /* smithwilson.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B83212D37EC400DA6239 /* smithwilson.cpp */; };
A7E9B96A12D37EC400DA6239 /* soergel.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B83512D37EC400DA6239 /* soergel.cpp */; };
A7E9B96B12D37EC400DA6239 /* solow.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B83712D37EC400DA6239 /* solow.cpp */; };
A7E9B96C12D37EC400DA6239 /* sparsematrix.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B83912D37EC400DA6239 /* sparsematrix.cpp */; };
A7E9B96D12D37EC400DA6239 /* spearman.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B83B12D37EC400DA6239 /* spearman.cpp */; };
A7E9B96E12D37EC400DA6239 /* speciesprofile.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B83D12D37EC400DA6239 /* speciesprofile.cpp */; };
A7E9B96F12D37EC400DA6239 /* splitabundcommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B83F12D37EC400DA6239 /* splitabundcommand.cpp */; };
A7E9B97012D37EC400DA6239 /* splitgroupscommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B84112D37EC400DA6239 /* splitgroupscommand.cpp */; };
A7E9B97112D37EC400DA6239 /* splitmatrix.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B84312D37EC400DA6239 /* splitmatrix.cpp */; };
A7E9B97212D37EC400DA6239 /* structchi2.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B84512D37EC400DA6239 /* structchi2.cpp */; };
A7E9B97312D37EC400DA6239 /* structchord.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B84712D37EC400DA6239 /* structchord.cpp */; };
A7E9B97412D37EC400DA6239 /* structeuclidean.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B84912D37EC400DA6239 /* structeuclidean.cpp */; };
A7E9B97512D37EC400DA6239 /* structkulczynski.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B84B12D37EC400DA6239 /* structkulczynski.cpp */; };
A7E9B97612D37EC400DA6239 /* structpearson.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B84D12D37EC400DA6239 /* structpearson.cpp */; };
A7E9B97712D37EC400DA6239 /* subsamplecommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B84F12D37EC400DA6239 /* subsamplecommand.cpp */; };
A7E9B97812D37EC400DA6239 /* suffixdb.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B85112D37EC400DA6239 /* suffixdb.cpp */; };
A7E9B97912D37EC400DA6239 /* suffixnodes.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B85312D37EC400DA6239 /* suffixnodes.cpp */; };
A7E9B97A12D37EC400DA6239 /* suffixtree.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B85512D37EC400DA6239 /* suffixtree.cpp */; };
A7E9B97B12D37EC400DA6239 /* summarycommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B85712D37EC400DA6239 /* summarycommand.cpp */; };
A7E9B97C12D37EC400DA6239 /* summarysharedcommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B85912D37EC400DA6239 /* summarysharedcommand.cpp */; };
A7E9B97D12D37EC400DA6239 /* systemcommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B85B12D37EC400DA6239 /* systemcommand.cpp */; };
A7E9B97E12D37EC400DA6239 /* taxonomyequalizer.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B85D12D37EC400DA6239 /* taxonomyequalizer.cpp */; };
A7E9B97F12D37EC400DA6239 /* tree.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B85F12D37EC400DA6239 /* tree.cpp */; };
A7E9B98012D37EC400DA6239 /* treesharedcommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B86212D37EC400DA6239 /* treesharedcommand.cpp */; };
A7E9B98112D37EC400DA6239 /* treemap.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B86412D37EC400DA6239 /* treemap.cpp */; };
A7E9B98212D37EC400DA6239 /* treenode.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B86612D37EC400DA6239 /* treenode.cpp */; };
A7E9B98312D37EC400DA6239 /* trimflowscommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B86812D37EC400DA6239 /* trimflowscommand.cpp */; };
A7E9B98412D37EC400DA6239 /* trimseqscommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B86A12D37EC400DA6239 /* trimseqscommand.cpp */; };
A7E9B98512D37EC400DA6239 /* unifracunweightedcommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B86C12D37EC400DA6239 /* unifracunweightedcommand.cpp */; };
A7E9B98612D37EC400DA6239 /* unifracweightedcommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B86E12D37EC400DA6239 /* unifracweightedcommand.cpp */; };
A7E9B98712D37EC400DA6239 /* unweighted.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B87012D37EC400DA6239 /* unweighted.cpp */; };
A7E9B98812D37EC400DA6239 /* uvest.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B87212D37EC400DA6239 /* uvest.cpp */; };
A7E9B98912D37EC400DA6239 /* validcalculator.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B87412D37EC400DA6239 /* validcalculator.cpp */; };
A7E9B98A12D37EC400DA6239 /* validparameter.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B87612D37EC400DA6239 /* validparameter.cpp */; };
A7E9B98B12D37EC400DA6239 /* venn.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B87812D37EC400DA6239 /* venn.cpp */; };
A7E9B98C12D37EC400DA6239 /* venncommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B87A12D37EC400DA6239 /* venncommand.cpp */; };
A7E9B98D12D37EC400DA6239 /* weighted.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B87C12D37EC400DA6239 /* weighted.cpp */; };
A7E9B98E12D37EC400DA6239 /* weightedlinkage.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B87E12D37EC400DA6239 /* weightedlinkage.cpp */; };
A7E9B98F12D37EC400DA6239 /* whittaker.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B87F12D37EC400DA6239 /* whittaker.cpp */; };
A7EEB0F514F29BFE00344B83 /* classifytreecommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7EEB0F414F29BFD00344B83 /* classifytreecommand.cpp */; };
A7F9F5CF141A5E500032F693 /* sequenceparser.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7F9F5CE141A5E500032F693 /* sequenceparser.cpp */; };
A7FA10021302E097003860FE /* mantelcommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7FA10011302E096003860FE /* mantelcommand.cpp */; };
A7FC480E12D788F20055BC5C /* linearalgebra.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7FC480D12D788F20055BC5C /* linearalgebra.cpp */; };
A7FC486712D795D60055BC5C /* pcacommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7FC486612D795D60055BC5C /* pcacommand.cpp */; };
A7FE7C401330EA1000F7B327 /* getcurrentcommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7FE7C3F1330EA1000F7B327 /* getcurrentcommand.cpp */; };
A7FE7E6D13311EA400F7B327 /* setcurrentcommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7FE7E6C13311EA400F7B327 /* setcurrentcommand.cpp */; };
A7FF19F2140FFDA500AD216D /* trimoligos.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7FF19F1140FFDA500AD216D /* trimoligos.cpp */; };
A7FFB558142CA02C004884F2 /* summarytaxcommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7FFB557142CA02C004884F2 /* summarytaxcommand.cpp */; };
F4103AD325A4DB7F001ED741 /* sharedrabundvectors.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 48BDDA701EC9D31400F0F6C0 /* sharedrabundvectors.cpp */; };
F4103AD625A4DB80001ED741 /* sharedrabundvectors.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 48BDDA701EC9D31400F0F6C0 /* sharedrabundvectors.cpp */; };
F41A1B91261257DE00144985 /* kmerdist.cpp in Sources */ = {isa = PBXBuildFile; fileRef = F41A1B8F261257DE00144985 /* kmerdist.cpp */; };
F44268EE27BD52D50000C15D /* alignmusclecommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = F44268EC27BD52D50000C15D /* alignmusclecommand.cpp */; };
F44268EF27BD52D50000C15D /* alignmusclecommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = F44268EC27BD52D50000C15D /* alignmusclecommand.cpp */; };
F45A2E3D25A78B4D00994F76 /* contigsreport.cpp in Sources */ = {isa = PBXBuildFile; fileRef = F45A2E3C25A78B4D00994F76 /* contigsreport.cpp */; };
F4A866B7265BE7720010479A /* protein.cpp in Sources */ = {isa = PBXBuildFile; fileRef = F4A866B5265BE7720010479A /* protein.cpp */; };
F4A866B8265BE7720010479A /* protein.cpp in Sources */ = {isa = PBXBuildFile; fileRef = F4A866B5265BE7720010479A /* protein.cpp */; };
F4A866BF265BE7EC0010479A /* aminoacid.cpp in Sources */ = {isa = PBXBuildFile; fileRef = F4A866BD265BE7EC0010479A /* aminoacid.cpp */; };
F4A866C0265BE7EC0010479A /* aminoacid.cpp in Sources */ = {isa = PBXBuildFile; fileRef = F4A866BD265BE7EC0010479A /* aminoacid.cpp */; };
F4A866D1266912830010479A /* proteindb.cpp in Sources */ = {isa = PBXBuildFile; fileRef = F4A866CF266912830010479A /* proteindb.cpp */; };
F4A866D2266912830010479A /* proteindb.cpp in Sources */ = {isa = PBXBuildFile; fileRef = F4A866CF266912830010479A /* proteindb.cpp */; };
F4A86713268F5CCE0010479A /* kimura.cpp in Sources */ = {isa = PBXBuildFile; fileRef = F4A86711268F5CCE0010479A /* kimura.cpp */; };
F4B4B0DC27396EF7003B2133 /* translateseqscommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = F4B4B0DA27396EF7003B2133 /* translateseqscommand.cpp */; };
F4B4B0DD27396EF7003B2133 /* translateseqscommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = F4B4B0DA27396EF7003B2133 /* translateseqscommand.cpp */; };
/* End PBXBuildFile section */
/* Begin PBXBuildRule section */
481FB6A11AC1BE060076CFF3 /* PBXBuildRule */ = {
isa = PBXBuildRule;
compilerSpec = com.apple.compilers.proxy.script;
fileType = sourcecode.fortran;
inputFiles = (
);
isEditable = 1;
outputFiles = (
"$(TARGET_BUILD_DIR)/$(INPUT_FILE_BASE).o",
);
script = "";
};
A7D162CB149F96CA000523E8 /* PBXBuildRule */ = {
isa = PBXBuildRule;
compilerSpec = com.apple.compilers.proxy.script;
fileType = sourcecode.fortran;
inputFiles = (
);
isEditable = 1;
outputFiles = (
"$(TARGET_BUILD_DIR)/$(INPUT_FILE_BASE).o",
);
script = "# Type a script or drag a script file from your workspace to insert its path.\n";
};
/* End PBXBuildRule section */
/* Begin PBXCopyFilesBuildPhase section */
481FB5171AC0A63E0076CFF3 /* CopyFiles */ = {
isa = PBXCopyFilesBuildPhase;
buildActionMask = 2147483647;
dstPath = /usr/share/man/man1/;
dstSubfolderSpec = 0;
files = (
);
runOnlyForDeploymentPostprocessing = 1;
};
8DD76FAF0486AB0100D96B5E /* CopyFiles */ = {
isa = PBXCopyFilesBuildPhase;
buildActionMask = 12;
dstPath = "";
dstSubfolderSpec = 16;
files = (
);
runOnlyForDeploymentPostprocessing = 0;
};
/* End PBXCopyFilesBuildPhase section */
/* Begin PBXFileReference section */
2114A7671C654D7400D3D8D9 /* averagelinkage.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = averagelinkage.cpp; path = source/averagelinkage.cpp; sourceTree = SOURCE_ROOT; };
219C1DDF1552C4BD004209F9 /* newcommandtemplate.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = newcommandtemplate.cpp; path = source/commands/newcommandtemplate.cpp; sourceTree = SOURCE_ROOT; };
219C1DE11552C508004209F9 /* newcommandtemplate.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = newcommandtemplate.h; path = source/commands/newcommandtemplate.h; sourceTree = SOURCE_ROOT; };
219C1DE31559BCCD004209F9 /* getcoremicrobiomecommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = getcoremicrobiomecommand.cpp; path = source/commands/getcoremicrobiomecommand.cpp; sourceTree = SOURCE_ROOT; };
219C1DE51559BCF2004209F9 /* getcoremicrobiomecommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = getcoremicrobiomecommand.h; path = source/commands/getcoremicrobiomecommand.h; sourceTree = SOURCE_ROOT; };
4803D5AB211CA67F001C63B5 /* testsharedrabundvector.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = testsharedrabundvector.cpp; path = TestMothur/testcontainers/testsharedrabundvector.cpp; sourceTree = SOURCE_ROOT; };
4803D5AC211CA67F001C63B5 /* testsharedrabundvector.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; name = testsharedrabundvector.hpp; path = TestMothur/testcontainers/testsharedrabundvector.hpp; sourceTree = SOURCE_ROOT; };
4803D5AE211CD839001C63B5 /* testsharedrabundfloatvector.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = testsharedrabundfloatvector.cpp; path = TestMothur/testcontainers/testsharedrabundfloatvector.cpp; sourceTree = SOURCE_ROOT; };
4803D5AF211CD839001C63B5 /* testsharedrabundfloatvector.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; name = testsharedrabundfloatvector.hpp; path = TestMothur/testcontainers/testsharedrabundfloatvector.hpp; sourceTree = SOURCE_ROOT; };
4803D5B1211DDA5A001C63B5 /* testsharedrabundvectors.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = testsharedrabundvectors.cpp; path = TestMothur/testcontainers/testsharedrabundvectors.cpp; sourceTree = SOURCE_ROOT; };
4803D5B2211DDA5A001C63B5 /* testsharedrabundvectors.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; name = testsharedrabundvectors.hpp; path = TestMothur/testcontainers/testsharedrabundvectors.hpp; sourceTree = SOURCE_ROOT; };
4803D5B421231D9D001C63B5 /* testsharedrabundfloatvectors.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = testsharedrabundfloatvectors.cpp; path = TestMothur/testcontainers/testsharedrabundfloatvectors.cpp; sourceTree = SOURCE_ROOT; };
4803D5B521231D9D001C63B5 /* testsharedrabundfloatvectors.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; name = testsharedrabundfloatvectors.hpp; path = TestMothur/testcontainers/testsharedrabundfloatvectors.hpp; sourceTree = SOURCE_ROOT; };
48098ED4219DE7A500031FA4 /* testsubsample.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = testsubsample.cpp; sourceTree = "<group>"; };
48098ED5219DE7A500031FA4 /* testsubsample.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; path = testsubsample.hpp; sourceTree = "<group>"; };
4809EC94227B2CB500B4D0E5 /* metrolognormal.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; name = metrolognormal.hpp; path = source/calculators/metrolognormal.hpp; sourceTree = SOURCE_ROOT; };
4809EC96227B405700B4D0E5 /* metrologstudent.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = metrologstudent.cpp; path = source/calculators/metrologstudent.cpp; sourceTree = SOURCE_ROOT; };
4809EC9A227B5D2500B4D0E5 /* metrologstudent.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; name = metrologstudent.hpp; path = source/calculators/metrologstudent.hpp; sourceTree = SOURCE_ROOT; };
4809EC9B227C9B3100B4D0E5 /* metrosichel.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = metrosichel.cpp; path = source/calculators/metrosichel.cpp; sourceTree = SOURCE_ROOT; };
4809EC9C227C9B3100B4D0E5 /* metrosichel.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; name = metrosichel.hpp; path = source/calculators/metrosichel.hpp; sourceTree = SOURCE_ROOT; };
4809EC9F2280898E00B4D0E5 /* igrarefaction.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = igrarefaction.cpp; path = source/calculators/igrarefaction.cpp; sourceTree = SOURCE_ROOT; };
4809ECA02280898E00B4D0E5 /* igrarefaction.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; name = igrarefaction.hpp; path = source/calculators/igrarefaction.hpp; sourceTree = SOURCE_ROOT; };
4809ECA322831A5E00B4D0E5 /* lnabundance.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = lnabundance.cpp; path = source/calculators/lnabundance.cpp; sourceTree = SOURCE_ROOT; };
4809ECA422831A5E00B4D0E5 /* lnabundance.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; name = lnabundance.hpp; path = source/calculators/lnabundance.hpp; sourceTree = SOURCE_ROOT; };
480D1E281EA681D100BF9C77 /* testclustercalcs.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = testclustercalcs.cpp; path = TestMothur/testclustercalcs.cpp; sourceTree = SOURCE_ROOT; };
480D1E291EA681D100BF9C77 /* testclustercalcs.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; name = testclustercalcs.hpp; path = TestMothur/testclustercalcs.hpp; sourceTree = SOURCE_ROOT; };
480D1E2D1EA685C500BF9C77 /* fakemcc.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; name = fakemcc.hpp; path = TestMothur/fakes/fakemcc.hpp; sourceTree = SOURCE_ROOT; };
480D1E2F1EA92D5500BF9C77 /* fakeoptimatrix.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = fakeoptimatrix.cpp; path = TestMothur/fakes/fakeoptimatrix.cpp; sourceTree = SOURCE_ROOT; };
480D1E301EA92D5500BF9C77 /* fakeoptimatrix.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; name = fakeoptimatrix.hpp; path = fakes/fakeoptimatrix.hpp; sourceTree = "<group>"; };
480E8DAF1CAB12ED00A0D137 /* testfastqread.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = testfastqread.cpp; path = TestMothur/testcontainers/testfastqread.cpp; sourceTree = SOURCE_ROOT; };
480E8DB01CAB12ED00A0D137 /* testfastqread.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = testfastqread.h; path = TestMothur/testcontainers/testfastqread.h; sourceTree = SOURCE_ROOT; };
4810D5B5218208CC00C668E8 /* testcounttable.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = testcounttable.cpp; path = testcontainers/testcounttable.cpp; sourceTree = "<group>"; };
4810D5B6218208CC00C668E8 /* testcounttable.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; name = testcounttable.hpp; path = testcontainers/testcounttable.hpp; sourceTree = "<group>"; };
4815BEAF2289E13500677EE2 /* lnrarefaction.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = lnrarefaction.cpp; path = source/calculators/lnrarefaction.cpp; sourceTree = SOURCE_ROOT; };
4815BEB02289E13500677EE2 /* lnrarefaction.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; name = lnrarefaction.hpp; path = source/calculators/lnrarefaction.hpp; sourceTree = SOURCE_ROOT; };
4815BEB2228B371E00677EE2 /* lnshift.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = lnshift.cpp; path = source/calculators/lnshift.cpp; sourceTree = SOURCE_ROOT; };
4815BEB3228B371E00677EE2 /* lnshift.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; name = lnshift.hpp; path = source/calculators/lnshift.hpp; sourceTree = SOURCE_ROOT; };
4815BEB6228DD18400677EE2 /* lsabundance.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = lsabundance.cpp; path = source/calculators/lsabundance.cpp; sourceTree = SOURCE_ROOT; };
4815BEB7228DD18400677EE2 /* lsabundance.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; name = lsabundance.hpp; path = source/calculators/lsabundance.hpp; sourceTree = SOURCE_ROOT; };
4815BEBA2293189600677EE2 /* lsrarefaction.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = lsrarefaction.cpp; path = source/calculators/lsrarefaction.cpp; sourceTree = SOURCE_ROOT; };
4815BEBB2293189600677EE2 /* lsrarefaction.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; name = lsrarefaction.hpp; path = source/calculators/lsrarefaction.hpp; sourceTree = SOURCE_ROOT; };
4815BEBF2295CE6800677EE2 /* siabundance.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = siabundance.cpp; path = source/calculators/siabundance.cpp; sourceTree = SOURCE_ROOT; };
4815BEC02295CE6800677EE2 /* siabundance.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; name = siabundance.hpp; path = source/calculators/siabundance.hpp; sourceTree = SOURCE_ROOT; };
4815BEC32296F19500677EE2 /* sirarefaction.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = sirarefaction.cpp; path = source/calculators/sirarefaction.cpp; sourceTree = SOURCE_ROOT; };
4815BEC42296F19500677EE2 /* sirarefaction.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; name = sirarefaction.hpp; path = source/calculators/sirarefaction.hpp; sourceTree = SOURCE_ROOT; };
4815BEC722970FA700677EE2 /* sishift.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = sishift.cpp; path = source/calculators/sishift.cpp; sourceTree = SOURCE_ROOT; };
4815BEC822970FA700677EE2 /* sishift.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; name = sishift.hpp; path = source/calculators/sishift.hpp; sourceTree = SOURCE_ROOT; };
4815BECB229717E100677EE2 /* diversitycalc.h */ = {isa = PBXFileReference; lastKnownFileType = sourcecode.c.h; name = diversitycalc.h; path = source/calculators/diversitycalc.h; sourceTree = SOURCE_ROOT; };
481623E11B56A2DB004C60B7 /* pcrseqscommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = pcrseqscommand.cpp; path = source/commands/pcrseqscommand.cpp; sourceTree = SOURCE_ROOT; };
481623E31B58267D004C60B7 /* INSTALL.md */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = net.daringfireball.markdown; path = INSTALL.md; sourceTree = SOURCE_ROOT; };
481E40DA244DFF5A0059C925 /* onegapignore.cpp */ = {isa = PBXFileReference; lastKnownFileType = sourcecode.cpp.cpp; name = onegapignore.cpp; path = source/calculators/onegapignore.cpp; sourceTree = SOURCE_ROOT; };
481E40DC244F52460059C925 /* ignoregaps.cpp */ = {isa = PBXFileReference; lastKnownFileType = sourcecode.cpp.cpp; name = ignoregaps.cpp; path = source/calculators/ignoregaps.cpp; sourceTree = SOURCE_ROOT; };
481E40DE244F619D0059C925 /* eachgapignore.cpp */ = {isa = PBXFileReference; lastKnownFileType = sourcecode.cpp.cpp; name = eachgapignore.cpp; path = source/calculators/eachgapignore.cpp; sourceTree = SOURCE_ROOT; };
481E40E0244F62980059C925 /* calculator.cpp */ = {isa = PBXFileReference; lastKnownFileType = sourcecode.cpp.cpp; name = calculator.cpp; path = source/calculators/calculator.cpp; sourceTree = SOURCE_ROOT; };
481E40E2244F6A050059C925 /* eachgapdist.cpp */ = {isa = PBXFileReference; lastKnownFileType = sourcecode.cpp.cpp; name = eachgapdist.cpp; path = source/calculators/eachgapdist.cpp; sourceTree = SOURCE_ROOT; };
481FB5191AC0A63E0076CFF3 /* TestMothur */ = {isa = PBXFileReference; explicitFileType = "compiled.mach-o.executable"; includeInIndex = 0; path = TestMothur; sourceTree = BUILT_PRODUCTS_DIR; };
481FB51B1AC0A63E0076CFF3 /* main.cpp */ = {isa = PBXFileReference; lastKnownFileType = sourcecode.cpp.cpp; name = main.cpp; path = TestMothur/main.cpp; sourceTree = SOURCE_ROOT; };
481FB5281AC19F8B0076CFF3 /* setseedcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = setseedcommand.cpp; path = source/commands/setseedcommand.cpp; sourceTree = SOURCE_ROOT; };
481FB5291AC19F8B0076CFF3 /* setseedcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = setseedcommand.h; path = source/commands/setseedcommand.h; sourceTree = SOURCE_ROOT; };
481FB52D1AC1B0CB0076CFF3 /* testsetseedcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = testsetseedcommand.cpp; path = TestMothur/testcommands/testsetseedcommand.cpp; sourceTree = SOURCE_ROOT; };
4827A4DA1CB3ED2100345170 /* fastqdataset.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = fastqdataset.cpp; path = TestMothur/fastqdataset.cpp; sourceTree = SOURCE_ROOT; };
4827A4DB1CB3ED2100345170 /* fastqdataset.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = fastqdataset.h; path = TestMothur/fastqdataset.h; sourceTree = SOURCE_ROOT; };
4829D9651B8387D0002EEED4 /* testbiominfocommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = testbiominfocommand.cpp; path = TestMothur/testbiominfocommand.cpp; sourceTree = SOURCE_ROOT; };
4829D9661B8387D0002EEED4 /* testbiominfocommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = testbiominfocommand.h; path = TestMothur/testbiominfocommand.h; sourceTree = SOURCE_ROOT; };
482AC3B72562B57600C9AF4A /* picrust.cpp */ = {isa = PBXFileReference; lastKnownFileType = sourcecode.cpp.cpp; name = picrust.cpp; path = source/datastructures/picrust.cpp; sourceTree = SOURCE_ROOT; };
482AC3B82562B57600C9AF4A /* picrust.hpp */ = {isa = PBXFileReference; lastKnownFileType = sourcecode.cpp.h; name = picrust.hpp; path = source/datastructures/picrust.hpp; sourceTree = SOURCE_ROOT; };
4837E5D622DE1BC400D3234B /* TestBatches */ = {isa = PBXFileReference; lastKnownFileType = folder; path = TestBatches; sourceTree = SOURCE_ROOT; };
483A9BAC225BBE55006102DF /* metroig.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = metroig.cpp; path = source/calculators/metroig.cpp; sourceTree = SOURCE_ROOT; };
483A9BAD225BBE55006102DF /* metroig.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; name = metroig.hpp; path = source/calculators/metroig.hpp; sourceTree = SOURCE_ROOT; };
4846AD881D3810DD00DE9913 /* testtrimoligos.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = testtrimoligos.cpp; path = TestMothur/testtrimoligos.cpp; sourceTree = SOURCE_ROOT; };
4846AD891D3810DD00DE9913 /* testtrimoligos.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; name = testtrimoligos.hpp; path = TestMothur/testtrimoligos.hpp; sourceTree = SOURCE_ROOT; };
484976DD22552E0B00F3A291 /* erarefaction.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = erarefaction.cpp; path = source/calculators/erarefaction.cpp; sourceTree = SOURCE_ROOT; };
484976DE22552E0B00F3A291 /* erarefaction.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; name = erarefaction.hpp; path = source/calculators/erarefaction.hpp; sourceTree = SOURCE_ROOT; };
484976E12255412400F3A291 /* igabundance.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = igabundance.cpp; path = source/calculators/igabundance.cpp; sourceTree = SOURCE_ROOT; };
484976E22255412400F3A291 /* igabundance.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; name = igabundance.hpp; path = source/calculators/igabundance.hpp; sourceTree = SOURCE_ROOT; };
484976E52256799100F3A291 /* diversityestimatorcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = diversityestimatorcommand.cpp; path = source/commands/diversityestimatorcommand.cpp; sourceTree = SOURCE_ROOT; };
484F21691BA1C5F8001C1B5F /* makefile-internal */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = text; path = "makefile-internal"; sourceTree = SOURCE_ROOT; };
48576EA31D05E8F600BBC9C0 /* testoptimatrix.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = testoptimatrix.cpp; path = TestMothur/testcontainers/testoptimatrix.cpp; sourceTree = SOURCE_ROOT; };
48576EA41D05E8F600BBC9C0 /* testoptimatrix.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = testoptimatrix.h; path = TestMothur/testcontainers/testoptimatrix.h; sourceTree = SOURCE_ROOT; };
48576EA61D05F59300BBC9C0 /* distpdataset.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = distpdataset.cpp; path = TestMothur/distpdataset.cpp; sourceTree = SOURCE_ROOT; };
48576EA71D05F59300BBC9C0 /* distpdataset.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = distpdataset.h; path = TestMothur/distpdataset.h; sourceTree = SOURCE_ROOT; };
485B0E061F264F2E00CA5F57 /* sharedrabundvector.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = sharedrabundvector.cpp; path = source/datastructures/sharedrabundvector.cpp; sourceTree = SOURCE_ROOT; };
485B0E071F264F2E00CA5F57 /* sharedrabundvector.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; name = sharedrabundvector.hpp; path = source/datastructures/sharedrabundvector.hpp; sourceTree = SOURCE_ROOT; };
485B0E0C1F27C40500CA5F57 /* sharedrabundfloatvector.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = sharedrabundfloatvector.cpp; path = source/datastructures/sharedrabundfloatvector.cpp; sourceTree = SOURCE_ROOT; };
485B0E0D1F27C40500CA5F57 /* sharedrabundfloatvector.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; name = sharedrabundfloatvector.hpp; path = source/datastructures/sharedrabundfloatvector.hpp; sourceTree = SOURCE_ROOT; };
486741981FD9ACCE00B07480 /* sharedwriter.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; name = sharedwriter.hpp; path = source/sharedwriter.hpp; sourceTree = SOURCE_ROOT; };
4867419A1FD9B3FE00B07480 /* writer.h */ = {isa = PBXFileReference; lastKnownFileType = sourcecode.c.h; name = writer.h; path = source/writer.h; sourceTree = SOURCE_ROOT; };
48705ABB19BE32C50075E977 /* getmimarkspackagecommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = getmimarkspackagecommand.cpp; path = source/commands/getmimarkspackagecommand.cpp; sourceTree = SOURCE_ROOT; };
48705ABC19BE32C50075E977 /* getmimarkspackagecommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = getmimarkspackagecommand.h; path = source/commands/getmimarkspackagecommand.h; sourceTree = SOURCE_ROOT; };
48705ABD19BE32C50075E977 /* oligos.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = oligos.cpp; path = source/datastructures/oligos.cpp; sourceTree = SOURCE_ROOT; };
48705ABE19BE32C50075E977 /* oligos.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = oligos.h; path = source/datastructures/oligos.h; sourceTree = SOURCE_ROOT; };
48705ABF19BE32C50075E977 /* mergesfffilecommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = mergesfffilecommand.cpp; path = source/commands/mergesfffilecommand.cpp; sourceTree = SOURCE_ROOT; };
48705AC019BE32C50075E977 /* mergesfffilecommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = mergesfffilecommand.h; path = source/commands/mergesfffilecommand.h; sourceTree = SOURCE_ROOT; };
48705AC119BE32C50075E977 /* sharedrjsd.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = sharedrjsd.cpp; path = source/calculators/sharedrjsd.cpp; sourceTree = SOURCE_ROOT; };
48705AC219BE32C50075E977 /* sharedrjsd.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = sharedrjsd.h; path = source/calculators/sharedrjsd.h; sourceTree = SOURCE_ROOT; };
4875F69922DCC723006A7D8C /* Ubuntu_20_Build.txt */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = text; path = Ubuntu_20_Build.txt; sourceTree = SOURCE_ROOT; };
48789AEF2061776100A7D848 /* utf8.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = utf8.h; path = source/utf8.h; sourceTree = SOURCE_ROOT; };
48789AF02061776100A7D848 /* checked.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = checked.h; path = source/checked.h; sourceTree = SOURCE_ROOT; };
48789AF12061776100A7D848 /* core.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = core.h; path = source/core.h; sourceTree = SOURCE_ROOT; };
48789AF22061776100A7D848 /* unchecked.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = unchecked.h; path = source/unchecked.h; sourceTree = SOURCE_ROOT; };
487C5A851AB88B93002AF48A /* mimarksattributescommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = mimarksattributescommand.cpp; path = source/commands/mimarksattributescommand.cpp; sourceTree = SOURCE_ROOT; };
487C5A861AB88B93002AF48A /* mimarksattributescommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = mimarksattributescommand.h; path = source/commands/mimarksattributescommand.h; sourceTree = SOURCE_ROOT; };
488563CF23CD00C4007B5659 /* taxonomy.cpp */ = {isa = PBXFileReference; lastKnownFileType = sourcecode.cpp.cpp; name = taxonomy.cpp; path = source/datastructures/taxonomy.cpp; sourceTree = SOURCE_ROOT; };
488563D023CD00C4007B5659 /* taxonomy.hpp */ = {isa = PBXFileReference; lastKnownFileType = sourcecode.cpp.h; name = taxonomy.hpp; path = source/datastructures/taxonomy.hpp; sourceTree = SOURCE_ROOT; };
48883FFB20C6D6C000CAF112 /* compare.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = compare.h; path = source/datastructures/compare.h; sourceTree = SOURCE_ROOT; };
488841631CC6C34900C5E972 /* renamefilecommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = renamefilecommand.cpp; path = source/commands/renamefilecommand.cpp; sourceTree = SOURCE_ROOT; };
488841641CC6C34900C5E972 /* renamefilecommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = renamefilecommand.h; path = source/commands/renamefilecommand.h; sourceTree = SOURCE_ROOT; };
4889EA201E8962D50054E0BB /* summary.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = summary.cpp; path = source/summary.cpp; sourceTree = SOURCE_ROOT; };
4889EA211E8962D50054E0BB /* summary.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; name = summary.hpp; path = source/summary.hpp; sourceTree = SOURCE_ROOT; };
48910D411D5243E500F60EDB /* mergecountcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = mergecountcommand.cpp; path = source/commands/mergecountcommand.cpp; sourceTree = SOURCE_ROOT; };
48910D421D5243E500F60EDB /* mergecountcommand.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; name = mergecountcommand.hpp; path = source/commands/mergecountcommand.hpp; sourceTree = SOURCE_ROOT; };
48910D451D58CAD700F60EDB /* opticluster.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = opticluster.cpp; path = source/opticluster.cpp; sourceTree = SOURCE_ROOT; };
48910D491D58CBA300F60EDB /* optimatrix.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = optimatrix.cpp; path = source/datastructures/optimatrix.cpp; sourceTree = SOURCE_ROOT; };
48910D4A1D58CBA300F60EDB /* optimatrix.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = optimatrix.h; path = source/datastructures/optimatrix.h; sourceTree = SOURCE_ROOT; };
48910D4C1D58CBFC00F60EDB /* opticluster.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = opticluster.h; path = source/opticluster.h; sourceTree = SOURCE_ROOT; };
48910D4D1D58E26C00F60EDB /* testopticluster.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = testopticluster.cpp; path = TestMothur/testopticluster.cpp; sourceTree = SOURCE_ROOT; };
48910D4E1D58E26C00F60EDB /* testopticluster.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = testopticluster.h; path = TestMothur/testopticluster.h; sourceTree = SOURCE_ROOT; };
48910D4F1D58E26C00F60EDB /* distcdataset.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = distcdataset.h; path = TestMothur/distcdataset.h; sourceTree = SOURCE_ROOT; };
48910D501D58E26C00F60EDB /* distcdataset.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = distcdataset.cpp; path = TestMothur/distcdataset.cpp; sourceTree = SOURCE_ROOT; };
489387F42107A60C00284329 /* testoptirefmatrix.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = testoptirefmatrix.cpp; path = TestMothur/testoptirefmatrix.cpp; sourceTree = SOURCE_ROOT; };
489387F52107A60C00284329 /* testoptirefmatrix.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; name = testoptirefmatrix.hpp; path = TestMothur/testoptirefmatrix.hpp; sourceTree = SOURCE_ROOT; };
489387F7210F633E00284329 /* testOligos.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = testOligos.cpp; path = TestMothur/testcontainers/testOligos.cpp; sourceTree = SOURCE_ROOT; };
489387F8210F633E00284329 /* testOligos.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; name = testOligos.hpp; path = TestMothur/testcontainers/testOligos.hpp; sourceTree = SOURCE_ROOT; };
48998B68242E785100DBD0A9 /* onegapdist.cpp */ = {isa = PBXFileReference; lastKnownFileType = sourcecode.cpp.cpp; name = onegapdist.cpp; path = source/calculators/onegapdist.cpp; sourceTree = SOURCE_ROOT; };
489B55701BCD7F0100FB7DC8 /* vsearchfileparser.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = vsearchfileparser.cpp; path = source/vsearchfileparser.cpp; sourceTree = SOURCE_ROOT; };
489B55711BCD7F0100FB7DC8 /* vsearchfileparser.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = vsearchfileparser.h; path = source/vsearchfileparser.h; sourceTree = SOURCE_ROOT; };
48A0552E2490066C00D0F97F /* sffread.cpp */ = {isa = PBXFileReference; lastKnownFileType = sourcecode.cpp.cpp; name = sffread.cpp; path = source/datastructures/sffread.cpp; sourceTree = SOURCE_ROOT; };
48A0552F2490066C00D0F97F /* sffread.hpp */ = {isa = PBXFileReference; lastKnownFileType = sourcecode.cpp.h; name = sffread.hpp; path = source/datastructures/sffread.hpp; sourceTree = SOURCE_ROOT; };
48A055312491577800D0F97F /* sffheader.cpp */ = {isa = PBXFileReference; lastKnownFileType = sourcecode.cpp.cpp; name = sffheader.cpp; path = source/datastructures/sffheader.cpp; sourceTree = SOURCE_ROOT; };
48A055322491577800D0F97F /* sffheader.hpp */ = {isa = PBXFileReference; lastKnownFileType = sourcecode.cpp.h; name = sffheader.hpp; path = source/datastructures/sffheader.hpp; sourceTree = SOURCE_ROOT; };
48A0B8EA2547282600726384 /* biom.cpp */ = {isa = PBXFileReference; lastKnownFileType = sourcecode.cpp.cpp; name = biom.cpp; path = source/datastructures/biom.cpp; sourceTree = SOURCE_ROOT; };
48A0B8EB2547282600726384 /* biom.hpp */ = {isa = PBXFileReference; lastKnownFileType = sourcecode.cpp.h; name = biom.hpp; path = source/datastructures/biom.hpp; sourceTree = SOURCE_ROOT; };
48A0B8EF25472C4500726384 /* biomhdf5.cpp */ = {isa = PBXFileReference; lastKnownFileType = sourcecode.cpp.cpp; name = biomhdf5.cpp; path = source/datastructures/biomhdf5.cpp; sourceTree = SOURCE_ROOT; };
48A0B8F025472C4500726384 /* biomhdf5.hpp */ = {isa = PBXFileReference; lastKnownFileType = sourcecode.cpp.h; name = biomhdf5.hpp; path = source/datastructures/biomhdf5.hpp; sourceTree = SOURCE_ROOT; };
48A0B8F425472C6500726384 /* biomsimple.cpp */ = {isa = PBXFileReference; lastKnownFileType = sourcecode.cpp.cpp; name = biomsimple.cpp; path = source/datastructures/biomsimple.cpp; sourceTree = SOURCE_ROOT; };
48A0B8F525472C6500726384 /* biomsimple.hpp */ = {isa = PBXFileReference; lastKnownFileType = sourcecode.cpp.h; name = biomsimple.hpp; path = source/datastructures/biomsimple.hpp; sourceTree = SOURCE_ROOT; };
48A11C6C1CDA40F0003481D8 /* testrenamefilecommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = testrenamefilecommand.cpp; path = TestMothur/testcommands/testrenamefilecommand.cpp; sourceTree = SOURCE_ROOT; };
48A11C6D1CDA40F0003481D8 /* testrenamefilecommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = testrenamefilecommand.h; path = TestMothur/testcommands/testrenamefilecommand.h; sourceTree = SOURCE_ROOT; };
48B01D2720163594006BE140 /* clusterfitcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = clusterfitcommand.cpp; path = source/commands/clusterfitcommand.cpp; sourceTree = SOURCE_ROOT; };
48B01D2820163594006BE140 /* clusterfitcommand.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; name = clusterfitcommand.hpp; path = source/commands/clusterfitcommand.hpp; sourceTree = SOURCE_ROOT; };
48B01D2A2016470F006BE140 /* sensspeccalc.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = sensspeccalc.cpp; path = source/sensspeccalc.cpp; sourceTree = SOURCE_ROOT; };
48B01D2B2016470F006BE140 /* sensspeccalc.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; name = sensspeccalc.hpp; path = source/sensspeccalc.hpp; sourceTree = SOURCE_ROOT; };
48B44EED1FB5006500789C45 /* currentfile.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = currentfile.cpp; path = source/currentfile.cpp; sourceTree = SOURCE_ROOT; };
48B44EF01FB9EF8200789C45 /* utils.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = utils.cpp; path = source/utils.cpp; sourceTree = SOURCE_ROOT; };
48B44EF11FB9EF8200789C45 /* utils.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; name = utils.hpp; path = source/utils.hpp; sourceTree = SOURCE_ROOT; };
48B662011BBB1B6600997EE4 /* testrenameseqscommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = testrenameseqscommand.cpp; path = TestMothur/testcommands/testrenameseqscommand.cpp; sourceTree = SOURCE_ROOT; };
48B662021BBB1B6600997EE4 /* testrenameseqscommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = testrenameseqscommand.h; path = TestMothur/testcommands/testrenameseqscommand.h; sourceTree = SOURCE_ROOT; };
48BD4EB621F7724C008EA73D /* filefile.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = filefile.cpp; path = source/datastructures/filefile.cpp; sourceTree = SOURCE_ROOT; };
48BD4EB721F7724C008EA73D /* filefile.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; name = filefile.hpp; path = source/datastructures/filefile.hpp; sourceTree = SOURCE_ROOT; };
48BDDA6F1EC9D31400F0F6C0 /* sharedrabundvectors.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; name = sharedrabundvectors.hpp; path = source/datastructures/sharedrabundvectors.hpp; sourceTree = SOURCE_ROOT; };
48BDDA701EC9D31400F0F6C0 /* sharedrabundvectors.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = sharedrabundvectors.cpp; path = source/datastructures/sharedrabundvectors.cpp; sourceTree = SOURCE_ROOT; };
48BDDA731ECA067000F0F6C0 /* sharedrabundfloatvectors.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = sharedrabundfloatvectors.cpp; path = source/datastructures/sharedrabundfloatvectors.cpp; sourceTree = SOURCE_ROOT; };
48BDDA741ECA067000F0F6C0 /* sharedrabundfloatvectors.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; name = sharedrabundfloatvectors.hpp; path = source/datastructures/sharedrabundfloatvectors.hpp; sourceTree = SOURCE_ROOT; };
48BDDA771ECA3B8E00F0F6C0 /* rabundfloatvector.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = rabundfloatvector.cpp; path = source/datastructures/rabundfloatvector.cpp; sourceTree = SOURCE_ROOT; };
48BDDA781ECA3B8E00F0F6C0 /* rabundfloatvector.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; name = rabundfloatvector.hpp; path = source/datastructures/rabundfloatvector.hpp; sourceTree = SOURCE_ROOT; };
48C51DEE1A76B870004ECDF1 /* fastqread.h */ = {isa = PBXFileReference; lastKnownFileType = sourcecode.c.h; name = fastqread.h; path = source/datastructures/fastqread.h; sourceTree = SOURCE_ROOT; };
48C51DEF1A76B888004ECDF1 /* fastqread.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = fastqread.cpp; path = source/datastructures/fastqread.cpp; sourceTree = SOURCE_ROOT; };
48C51DF11A793EFE004ECDF1 /* kmeralign.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = kmeralign.cpp; path = source/datastructures/kmeralign.cpp; sourceTree = SOURCE_ROOT; };
48C51DF21A793EFE004ECDF1 /* kmeralign.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = kmeralign.h; path = source/datastructures/kmeralign.h; sourceTree = SOURCE_ROOT; };
48C728641B66A77800D40830 /* testsequence.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = testsequence.cpp; path = TestMothur/testcontainers/testsequence.cpp; sourceTree = SOURCE_ROOT; };
48C728681B69598400D40830 /* testmergegroupscommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = testmergegroupscommand.cpp; path = TestMothur/testcommands/testmergegroupscommand.cpp; sourceTree = SOURCE_ROOT; };
48C728691B69598400D40830 /* testmergegroupscommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = testmergegroupscommand.h; path = TestMothur/testcommands/testmergegroupscommand.h; sourceTree = SOURCE_ROOT; };
48C7286F1B6AB3B900D40830 /* testremovegroupscommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = testremovegroupscommand.cpp; path = TestMothur/testcommands/testremovegroupscommand.cpp; sourceTree = SOURCE_ROOT; };
48C728701B6AB3B900D40830 /* testremovegroupscommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = testremovegroupscommand.h; path = TestMothur/testcommands/testremovegroupscommand.h; sourceTree = SOURCE_ROOT; };
48C728731B6AB4CD00D40830 /* testgetgroupscommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = testgetgroupscommand.cpp; path = TestMothur/testcommands/testgetgroupscommand.cpp; sourceTree = SOURCE_ROOT; };
48C728741B6AB4CD00D40830 /* testgetgroupscommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = testgetgroupscommand.h; path = TestMothur/testcommands/testgetgroupscommand.h; sourceTree = SOURCE_ROOT; };
48C728761B6AB4EE00D40830 /* testsequence.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = testsequence.h; path = TestMothur/testcontainers/testsequence.h; sourceTree = SOURCE_ROOT; };
48C728771B728D6B00D40830 /* biominfocommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = biominfocommand.cpp; path = source/commands/biominfocommand.cpp; sourceTree = SOURCE_ROOT; };
48C728781B728D6B00D40830 /* biominfocommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = biominfocommand.h; path = source/commands/biominfocommand.h; sourceTree = SOURCE_ROOT; };
48CC010E1EB79E49009D61E6 /* fakeoligos.h */ = {isa = PBXFileReference; lastKnownFileType = sourcecode.c.h; name = fakeoligos.h; path = fakes/fakeoligos.h; sourceTree = "<group>"; };
48CF76EE21BEBDD300B2FB5C /* mergeotuscommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = mergeotuscommand.cpp; path = source/commands/mergeotuscommand.cpp; sourceTree = SOURCE_ROOT; };
48CF76EF21BEBDD300B2FB5C /* mergeotuscommand.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; name = mergeotuscommand.hpp; path = source/commands/mergeotuscommand.hpp; sourceTree = SOURCE_ROOT; };
48D6E9661CA42389008DF76B /* testvsearchfileparser.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = testvsearchfileparser.cpp; path = TestMothur/testvsearchfileparser.cpp; sourceTree = SOURCE_ROOT; };
48D6E9671CA42389008DF76B /* testvsearchfileparser.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = testvsearchfileparser.h; path = TestMothur/testvsearchfileparser.h; sourceTree = SOURCE_ROOT; };
48D6E9691CA4262A008DF76B /* dataset.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = dataset.cpp; path = TestMothur/dataset.cpp; sourceTree = SOURCE_ROOT; };
48D6E96A1CA4262A008DF76B /* dataset.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = dataset.h; path = TestMothur/dataset.h; sourceTree = SOURCE_ROOT; };
48DB37B11B3B27E000C372A4 /* makefilecommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = makefilecommand.cpp; path = source/commands/makefilecommand.cpp; sourceTree = SOURCE_ROOT; };
48DB37B21B3B27E000C372A4 /* makefilecommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = makefilecommand.h; path = source/commands/makefilecommand.h; sourceTree = SOURCE_ROOT; };
48E0230124BF488D00BFEA41 /* report.cpp */ = {isa = PBXFileReference; lastKnownFileType = sourcecode.cpp.cpp; name = report.cpp; path = source/datastructures/report.cpp; sourceTree = SOURCE_ROOT; };
48E0230224BF488D00BFEA41 /* report.hpp */ = {isa = PBXFileReference; lastKnownFileType = sourcecode.cpp.h; name = report.hpp; path = source/datastructures/report.hpp; sourceTree = SOURCE_ROOT; };
48E5443F1E9C292900FF6AB8 /* mcc.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = mcc.cpp; path = source/calculators/mcc.cpp; sourceTree = SOURCE_ROOT; };
48E544401E9C292900FF6AB8 /* mcc.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; name = mcc.hpp; path = source/calculators/mcc.hpp; sourceTree = SOURCE_ROOT; };
48E544431E9C2B1000FF6AB8 /* sensitivity.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = sensitivity.cpp; path = source/calculators/sensitivity.cpp; sourceTree = SOURCE_ROOT; };
48E544441E9C2B1000FF6AB8 /* sensitivity.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; name = sensitivity.hpp; path = source/calculators/sensitivity.hpp; sourceTree = SOURCE_ROOT; };
48E544471E9C2BE100FF6AB8 /* specificity.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = specificity.cpp; path = source/calculators/specificity.cpp; sourceTree = SOURCE_ROOT; };
48E544481E9C2BE100FF6AB8 /* specificity.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; name = specificity.hpp; path = source/calculators/specificity.hpp; sourceTree = SOURCE_ROOT; };
48E5444B1E9C2C8F00FF6AB8 /* tptn.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = tptn.cpp; path = source/calculators/tptn.cpp; sourceTree = SOURCE_ROOT; };
48E5444C1E9C2C8F00FF6AB8 /* tptn.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; name = tptn.hpp; path = source/calculators/tptn.hpp; sourceTree = SOURCE_ROOT; };
48E5444F1E9C2CFD00FF6AB8 /* tp.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = tp.cpp; path = source/calculators/tp.cpp; sourceTree = SOURCE_ROOT; };
48E544501E9C2CFD00FF6AB8 /* tp.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; name = tp.hpp; path = source/calculators/tp.hpp; sourceTree = SOURCE_ROOT; };
48E544531E9C2DF500FF6AB8 /* tn.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = tn.cpp; path = source/calculators/tn.cpp; sourceTree = SOURCE_ROOT; };
48E544541E9C2DF500FF6AB8 /* tn.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; name = tn.hpp; path = source/calculators/tn.hpp; sourceTree = SOURCE_ROOT; };
48E544571E9C2E6500FF6AB8 /* fp.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = fp.cpp; path = source/calculators/fp.cpp; sourceTree = SOURCE_ROOT; };
48E544581E9C2E6500FF6AB8 /* fp.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; name = fp.hpp; path = source/calculators/fp.hpp; sourceTree = SOURCE_ROOT; };
48E5445B1E9C2F0F00FF6AB8 /* fn.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = fn.cpp; path = source/calculators/fn.cpp; sourceTree = SOURCE_ROOT; };
48E5445C1E9C2F0F00FF6AB8 /* fn.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; name = fn.hpp; path = source/calculators/fn.hpp; sourceTree = SOURCE_ROOT; };
48E5445F1E9C2FB800FF6AB8 /* fpfn.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = fpfn.cpp; path = source/calculators/fpfn.cpp; sourceTree = SOURCE_ROOT; };
48E544601E9C2FB800FF6AB8 /* fpfn.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; name = fpfn.hpp; path = source/calculators/fpfn.hpp; sourceTree = SOURCE_ROOT; };
48E5446A1E9D3A8C00FF6AB8 /* f1score.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = f1score.cpp; path = source/calculators/f1score.cpp; sourceTree = SOURCE_ROOT; };
48E5446B1E9D3A8C00FF6AB8 /* f1score.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; name = f1score.hpp; path = source/calculators/f1score.hpp; sourceTree = SOURCE_ROOT; };
48E5446E1E9D3B2D00FF6AB8 /* accuracy.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = accuracy.cpp; path = source/calculators/accuracy.cpp; sourceTree = SOURCE_ROOT; };
48E5446F1E9D3B2D00FF6AB8 /* accuracy.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; name = accuracy.hpp; path = source/calculators/accuracy.hpp; sourceTree = SOURCE_ROOT; };
48E544721E9D3C1200FF6AB8 /* ppv.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = ppv.cpp; path = source/calculators/ppv.cpp; sourceTree = SOURCE_ROOT; };
48E544731E9D3C1200FF6AB8 /* ppv.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; name = ppv.hpp; path = source/calculators/ppv.hpp; sourceTree = SOURCE_ROOT; };
48E544761E9D3CE400FF6AB8 /* npv.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = npv.cpp; path = source/calculators/npv.cpp; sourceTree = SOURCE_ROOT; };
48E544771E9D3CE400FF6AB8 /* npv.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; name = npv.hpp; path = source/calculators/npv.hpp; sourceTree = SOURCE_ROOT; };
48E5447A1E9D3F0400FF6AB8 /* fdr.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = fdr.cpp; path = source/calculators/fdr.cpp; sourceTree = SOURCE_ROOT; };
48E5447B1E9D3F0400FF6AB8 /* fdr.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; name = fdr.hpp; path = source/calculators/fdr.hpp; sourceTree = SOURCE_ROOT; };
48E7E0A12278A21B00B74910 /* metrolognormal.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = metrolognormal.cpp; path = source/calculators/metrolognormal.cpp; sourceTree = SOURCE_ROOT; };
48E7E0A42278AD4800B74910 /* diversityutils.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = diversityutils.cpp; path = source/calculators/diversityutils.cpp; sourceTree = SOURCE_ROOT; };
48E7E0A52278AD4800B74910 /* diversityutils.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; name = diversityutils.hpp; path = source/calculators/diversityutils.hpp; sourceTree = SOURCE_ROOT; };
48ED1E77235E1ACA003E66F7 /* scriptengine.cpp */ = {isa = PBXFileReference; lastKnownFileType = sourcecode.cpp.cpp; name = scriptengine.cpp; path = source/engines/scriptengine.cpp; sourceTree = SOURCE_ROOT; };
48ED1E78235E1ACA003E66F7 /* scriptengine.hpp */ = {isa = PBXFileReference; lastKnownFileType = sourcecode.cpp.h; name = scriptengine.hpp; path = source/engines/scriptengine.hpp; sourceTree = SOURCE_ROOT; };
48ED1E7B235E1BB4003E66F7 /* interactengine.cpp */ = {isa = PBXFileReference; lastKnownFileType = sourcecode.cpp.cpp; name = interactengine.cpp; path = source/engines/interactengine.cpp; sourceTree = SOURCE_ROOT; };
48ED1E7C235E1BB4003E66F7 /* interactengine.hpp */ = {isa = PBXFileReference; lastKnownFileType = sourcecode.cpp.h; name = interactengine.hpp; path = source/engines/interactengine.hpp; sourceTree = SOURCE_ROOT; };
48ED1E7F235E1D59003E66F7 /* batchengine.cpp */ = {isa = PBXFileReference; lastKnownFileType = sourcecode.cpp.cpp; name = batchengine.cpp; path = source/engines/batchengine.cpp; sourceTree = SOURCE_ROOT; };
48ED1E80235E1D59003E66F7 /* batchengine.hpp */ = {isa = PBXFileReference; lastKnownFileType = sourcecode.cpp.h; name = batchengine.hpp; path = source/engines/batchengine.hpp; sourceTree = SOURCE_ROOT; };
48ED1E8323689DE8003E66F7 /* srainfocommand.cpp */ = {isa = PBXFileReference; lastKnownFileType = sourcecode.cpp.cpp; name = srainfocommand.cpp; path = source/commands/srainfocommand.cpp; sourceTree = SOURCE_ROOT; };
48ED1E8423689DE8003E66F7 /* srainfocommand.hpp */ = {isa = PBXFileReference; lastKnownFileType = sourcecode.cpp.h; name = srainfocommand.hpp; path = source/commands/srainfocommand.hpp; sourceTree = SOURCE_ROOT; };
48EDB76A1D1320DD00F76E93 /* chimeravsearchcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = chimeravsearchcommand.cpp; path = source/commands/chimeravsearchcommand.cpp; sourceTree = SOURCE_ROOT; };
48EDB76B1D1320DD00F76E93 /* chimeravsearchcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = chimeravsearchcommand.h; path = source/commands/chimeravsearchcommand.h; sourceTree = SOURCE_ROOT; };
48F06CCB1D74BEC4004A45DD /* testphylotree.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = testphylotree.cpp; path = testclassifier/testphylotree.cpp; sourceTree = "<group>"; };
48F06CCC1D74BEC4004A45DD /* testphylotree.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; name = testphylotree.hpp; path = testclassifier/testphylotree.hpp; sourceTree = "<group>"; };
48F1C16423D606050034DAAF /* makeclrcommand.cpp */ = {isa = PBXFileReference; lastKnownFileType = sourcecode.cpp.cpp; name = makeclrcommand.cpp; path = source/commands/makeclrcommand.cpp; sourceTree = SOURCE_ROOT; };
48F1C16523D606050034DAAF /* makeclrcommand.hpp */ = {isa = PBXFileReference; lastKnownFileType = sourcecode.cpp.h; name = makeclrcommand.hpp; path = source/commands/makeclrcommand.hpp; sourceTree = SOURCE_ROOT; };
48F1C16823D78D7B0034DAAF /* sharedclrvectors.cpp */ = {isa = PBXFileReference; lastKnownFileType = sourcecode.cpp.cpp; name = sharedclrvectors.cpp; path = source/datastructures/sharedclrvectors.cpp; sourceTree = SOURCE_ROOT; };
48F1C16923D78D7B0034DAAF /* sharedclrvectors.hpp */ = {isa = PBXFileReference; lastKnownFileType = sourcecode.cpp.h; name = sharedclrvectors.hpp; path = source/datastructures/sharedclrvectors.hpp; sourceTree = SOURCE_ROOT; };
48F1C16C23D78F8D0034DAAF /* sharedclrvector.cpp */ = {isa = PBXFileReference; lastKnownFileType = sourcecode.cpp.cpp; name = sharedclrvector.cpp; path = source/datastructures/sharedclrvector.cpp; sourceTree = SOURCE_ROOT; };
48F1C16D23D78F8D0034DAAF /* sharedclrvector.hpp */ = {isa = PBXFileReference; lastKnownFileType = sourcecode.cpp.h; name = sharedclrvector.hpp; path = source/datastructures/sharedclrvector.hpp; sourceTree = SOURCE_ROOT; };
48F98E4C1A9CFD670005E81B /* completelinkage.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = completelinkage.cpp; path = source/completelinkage.cpp; sourceTree = SOURCE_ROOT; };
48FB99C3209B69FA00FF9F6E /* optirefmatrix.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = optirefmatrix.cpp; path = source/datastructures/optirefmatrix.cpp; sourceTree = SOURCE_ROOT; };
48FB99C4209B69FA00FF9F6E /* optirefmatrix.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; name = optirefmatrix.hpp; path = source/datastructures/optirefmatrix.hpp; sourceTree = SOURCE_ROOT; };
48FB99C720A48EF700FF9F6E /* optidata.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = optidata.cpp; path = source/datastructures/optidata.cpp; sourceTree = SOURCE_ROOT; };
48FB99C820A48EF700FF9F6E /* optidata.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; name = optidata.hpp; path = source/datastructures/optidata.hpp; sourceTree = SOURCE_ROOT; };
48FB99CA20A4AD7D00FF9F6E /* optiblastmatrix.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = optiblastmatrix.cpp; path = source/datastructures/optiblastmatrix.cpp; sourceTree = SOURCE_ROOT; };
48FB99CB20A4AD7D00FF9F6E /* optiblastmatrix.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; name = optiblastmatrix.hpp; path = source/datastructures/optiblastmatrix.hpp; sourceTree = SOURCE_ROOT; };
48FB99CD20A4F3FB00FF9F6E /* optifitcluster.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = optifitcluster.cpp; path = source/optifitcluster.cpp; sourceTree = SOURCE_ROOT; };
48FB99CE20A4F3FB00FF9F6E /* optifitcluster.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; name = optifitcluster.hpp; path = source/optifitcluster.hpp; sourceTree = SOURCE_ROOT; };
48FD9946243E5FB10017C521 /* Makefile_cluster */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = text; path = Makefile_cluster; sourceTree = SOURCE_ROOT; };
7B2181FE17AD777B00286E6A /* classifysvmsharedcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = classifysvmsharedcommand.cpp; path = source/commands/classifysvmsharedcommand.cpp; sourceTree = SOURCE_ROOT; };
7B2181FF17AD777B00286E6A /* classifysvmsharedcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = classifysvmsharedcommand.h; path = source/commands/classifysvmsharedcommand.h; sourceTree = SOURCE_ROOT; };
7B21820117AD77BD00286E6A /* svm.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = svm.cpp; path = source/svm/svm.cpp; sourceTree = SOURCE_ROOT; };
7B21820217AD77BD00286E6A /* svm.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; name = svm.hpp; path = source/svm/svm.hpp; sourceTree = SOURCE_ROOT; };
7E6BE10812F710D8007ADDBE /* refchimeratest.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = refchimeratest.h; path = source/refchimeratest.h; sourceTree = SOURCE_ROOT; };
7E6BE10912F710D8007ADDBE /* refchimeratest.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = refchimeratest.cpp; path = source/refchimeratest.cpp; sourceTree = SOURCE_ROOT; };
8DD76FB20486AB0100D96B5E /* mothur */ = {isa = PBXFileReference; explicitFileType = "compiled.mach-o.executable"; includeInIndex = 0; path = mothur; sourceTree = BUILT_PRODUCTS_DIR; };
A70056E5156A93D000924A2D /* getotuscommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = getotuscommand.cpp; path = source/commands/getotuscommand.cpp; sourceTree = SOURCE_ROOT; };
A70056E8156A93E300924A2D /* getotuscommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = getotuscommand.h; path = source/commands/getotuscommand.h; sourceTree = SOURCE_ROOT; };
A70056E9156AB6D400924A2D /* removeotuscommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = removeotuscommand.h; path = source/commands/removeotuscommand.h; sourceTree = SOURCE_ROOT; };
A70056EA156AB6E500924A2D /* removeotuscommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = removeotuscommand.cpp; path = source/commands/removeotuscommand.cpp; sourceTree = SOURCE_ROOT; };
A70332B512D3A13400761E33 /* Makefile */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.make; path = Makefile; sourceTree = SOURCE_ROOT; };
A7128B1A16B7001200723BE4 /* getdistscommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = getdistscommand.h; path = source/commands/getdistscommand.h; sourceTree = SOURCE_ROOT; };
A7128B1C16B7002600723BE4 /* getdistscommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = getdistscommand.cpp; path = source/commands/getdistscommand.cpp; sourceTree = SOURCE_ROOT; };
A7132EAE184E76EB00AAA402 /* communitytype.h */ = {isa = PBXFileReference; lastKnownFileType = sourcecode.c.h; name = communitytype.h; path = source/communitytype/communitytype.h; sourceTree = SOURCE_ROOT; };
A7132EB2184E792700AAA402 /* communitytype.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = communitytype.cpp; path = source/communitytype/communitytype.cpp; sourceTree = SOURCE_ROOT; };
A713EBAA12DC7613000092AC /* readphylipvector.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = readphylipvector.h; path = source/read/readphylipvector.h; sourceTree = SOURCE_ROOT; };
A713EBAB12DC7613000092AC /* readphylipvector.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = readphylipvector.cpp; path = source/read/readphylipvector.cpp; sourceTree = SOURCE_ROOT; };
A713EBEB12DC7C5E000092AC /* nmdscommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = nmdscommand.h; path = source/commands/nmdscommand.h; sourceTree = SOURCE_ROOT; };
A713EBEC12DC7C5E000092AC /* nmdscommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = nmdscommand.cpp; path = source/commands/nmdscommand.cpp; sourceTree = SOURCE_ROOT; };
A7190B201768E0DF00A9AFA6 /* lefsecommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = lefsecommand.cpp; path = source/commands/lefsecommand.cpp; sourceTree = SOURCE_ROOT; };
A7190B211768E0DF00A9AFA6 /* lefsecommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = lefsecommand.h; path = source/commands/lefsecommand.h; sourceTree = SOURCE_ROOT; };
A71CB15E130B04A2001E7287 /* anosimcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = anosimcommand.cpp; path = source/commands/anosimcommand.cpp; sourceTree = SOURCE_ROOT; };
A71CB15F130B04A2001E7287 /* anosimcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = anosimcommand.h; path = source/commands/anosimcommand.h; sourceTree = SOURCE_ROOT; };
A71FE12A12EDF72400963CA7 /* mergegroupscommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = mergegroupscommand.h; path = source/commands/mergegroupscommand.h; sourceTree = SOURCE_ROOT; };
A71FE12B12EDF72400963CA7 /* mergegroupscommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = mergegroupscommand.cpp; path = source/commands/mergegroupscommand.cpp; sourceTree = SOURCE_ROOT; };
A721AB66161C570F009860A1 /* alignnode.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = alignnode.cpp; path = source/classifier/alignnode.cpp; sourceTree = SOURCE_ROOT; };
A721AB67161C570F009860A1 /* alignnode.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = alignnode.h; path = source/classifier/alignnode.h; sourceTree = SOURCE_ROOT; };
A721AB68161C570F009860A1 /* aligntree.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = aligntree.cpp; path = source/classifier/aligntree.cpp; sourceTree = SOURCE_ROOT; };
A721AB69161C570F009860A1 /* aligntree.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = aligntree.h; path = source/classifier/aligntree.h; sourceTree = SOURCE_ROOT; };
A721AB6D161C572A009860A1 /* kmernode.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = kmernode.cpp; path = source/classifier/kmernode.cpp; sourceTree = SOURCE_ROOT; };
A721AB6E161C572A009860A1 /* kmernode.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = kmernode.h; path = source/classifier/kmernode.h; sourceTree = SOURCE_ROOT; };
A721AB6F161C572A009860A1 /* kmertree.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = kmertree.cpp; path = source/classifier/kmertree.cpp; sourceTree = SOURCE_ROOT; };
A721AB70161C572A009860A1 /* kmertree.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = kmertree.h; path = source/classifier/kmertree.h; sourceTree = SOURCE_ROOT; };
A721AB73161C573B009860A1 /* taxonomynode.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = taxonomynode.cpp; path = source/classifier/taxonomynode.cpp; sourceTree = SOURCE_ROOT; };
A721AB74161C573B009860A1 /* taxonomynode.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = taxonomynode.h; path = source/classifier/taxonomynode.h; sourceTree = SOURCE_ROOT; };
A7222D711856276C0055A993 /* sharedjsd.h */ = {isa = PBXFileReference; lastKnownFileType = sourcecode.c.h; name = sharedjsd.h; path = source/calculators/sharedjsd.h; sourceTree = SOURCE_ROOT; };
A7222D721856277C0055A993 /* sharedjsd.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = sharedjsd.cpp; path = source/calculators/sharedjsd.cpp; sourceTree = SOURCE_ROOT; };
A724D2B4153C8600000A826F /* makebiomcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = makebiomcommand.h; path = source/commands/makebiomcommand.h; sourceTree = SOURCE_ROOT; };
A724D2B6153C8628000A826F /* makebiomcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = makebiomcommand.cpp; path = source/commands/makebiomcommand.cpp; sourceTree = SOURCE_ROOT; };
A727864212E9E28C00F86ABA /* removerarecommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = removerarecommand.h; path = source/commands/removerarecommand.h; sourceTree = SOURCE_ROOT; };
A727864312E9E28C00F86ABA /* removerarecommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = removerarecommand.cpp; path = source/commands/removerarecommand.cpp; sourceTree = SOURCE_ROOT; };
A73DDC3613C4BF64006AAE38 /* mothurmetastats.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = mothurmetastats.h; path = source/metastats/mothurmetastats.h; sourceTree = SOURCE_ROOT; };
A73DDC3713C4BF64006AAE38 /* mothurmetastats.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = mothurmetastats.cpp; path = source/metastats/mothurmetastats.cpp; sourceTree = SOURCE_ROOT; };
A741744A175CD9B1007DF49B /* makelefsecommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = makelefsecommand.cpp; path = source/commands/makelefsecommand.cpp; sourceTree = SOURCE_ROOT; };
A741744B175CD9B1007DF49B /* makelefsecommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = makelefsecommand.h; path = source/commands/makelefsecommand.h; sourceTree = SOURCE_ROOT; };
A741FAD115D1688E0067BCC5 /* sequencecountparser.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = sequencecountparser.cpp; path = source/datastructures/sequencecountparser.cpp; sourceTree = SOURCE_ROOT; };
A741FAD415D168A00067BCC5 /* sequencecountparser.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = sequencecountparser.h; path = source/datastructures/sequencecountparser.h; sourceTree = SOURCE_ROOT; };
A747EC6F181EA0E500345732 /* sracommand.h */ = {isa = PBXFileReference; lastKnownFileType = sourcecode.c.h; name = sracommand.h; path = source/commands/sracommand.h; sourceTree = SOURCE_ROOT; };
A747EC70181EA0F900345732 /* sracommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = sracommand.cpp; path = source/commands/sracommand.cpp; sourceTree = SOURCE_ROOT; };
A7496D2C167B531B00CC7D7C /* kruskalwalliscommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = kruskalwalliscommand.cpp; path = source/commands/kruskalwalliscommand.cpp; sourceTree = SOURCE_ROOT; };
A7496D2D167B531B00CC7D7C /* kruskalwalliscommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = kruskalwalliscommand.h; path = source/commands/kruskalwalliscommand.h; sourceTree = SOURCE_ROOT; };
A74C06E616A9C097008390A3 /* primerdesigncommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = primerdesigncommand.h; path = source/commands/primerdesigncommand.h; sourceTree = SOURCE_ROOT; };
A74C06E816A9C0A8008390A3 /* primerdesigncommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = primerdesigncommand.cpp; path = source/commands/primerdesigncommand.cpp; sourceTree = SOURCE_ROOT; };
A74D36B6137DAFAA00332B0C /* chimerauchimecommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = chimerauchimecommand.h; path = source/commands/chimerauchimecommand.h; sourceTree = SOURCE_ROOT; };
A74D36B7137DAFAA00332B0C /* chimerauchimecommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = chimerauchimecommand.cpp; path = source/commands/chimerauchimecommand.cpp; sourceTree = SOURCE_ROOT; };
A74D59A3159A1E2000043046 /* counttable.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = counttable.cpp; path = source/datastructures/counttable.cpp; sourceTree = SOURCE_ROOT; };
A74D59A6159A1E3600043046 /* counttable.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = counttable.h; path = source/datastructures/counttable.h; sourceTree = SOURCE_ROOT; };
A754149514840CF7005850D1 /* summaryqualcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = summaryqualcommand.h; path = source/commands/summaryqualcommand.h; sourceTree = SOURCE_ROOT; };
A754149614840CF7005850D1 /* summaryqualcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = summaryqualcommand.cpp; path = source/commands/summaryqualcommand.cpp; sourceTree = SOURCE_ROOT; };
A7548FAB17142EA500B1F05A /* getmetacommunitycommand.h */ = {isa = PBXFileReference; lastKnownFileType = sourcecode.c.h; name = getmetacommunitycommand.h; path = source/commands/getmetacommunitycommand.h; sourceTree = SOURCE_ROOT; };
A7548FAC17142EBC00B1F05A /* getmetacommunitycommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = getmetacommunitycommand.cpp; path = source/commands/getmetacommunitycommand.cpp; sourceTree = SOURCE_ROOT; };
A7548FAE171440EC00B1F05A /* qFinderDMM.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = qFinderDMM.cpp; path = source/communitytype/qFinderDMM.cpp; sourceTree = SOURCE_ROOT; };
A7548FAF171440ED00B1F05A /* qFinderDMM.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = qFinderDMM.h; path = source/communitytype/qFinderDMM.h; sourceTree = SOURCE_ROOT; };
A75790571301749D00A30DAB /* homovacommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = homovacommand.h; path = source/commands/homovacommand.h; sourceTree = SOURCE_ROOT; };
A75790581301749D00A30DAB /* homovacommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = homovacommand.cpp; path = source/commands/homovacommand.cpp; sourceTree = SOURCE_ROOT; };
A76CDD7F1510F09A004C8458 /* pcrseqscommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = pcrseqscommand.h; path = source/commands/pcrseqscommand.h; sourceTree = SOURCE_ROOT; };
A7730EFD13967241007433A3 /* countseqscommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = countseqscommand.h; path = source/commands/countseqscommand.h; sourceTree = SOURCE_ROOT; };
A7730EFE13967241007433A3 /* countseqscommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; lineEnding = 0; name = countseqscommand.cpp; path = source/commands/countseqscommand.cpp; sourceTree = SOURCE_ROOT; xcLanguageSpecificationIdentifier = xcode.lang.cpp; };
A774101214695AF60098E6AC /* shhhseqscommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = shhhseqscommand.h; path = source/commands/shhhseqscommand.h; sourceTree = SOURCE_ROOT; };
A774101314695AF60098E6AC /* shhhseqscommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = shhhseqscommand.cpp; path = source/commands/shhhseqscommand.cpp; sourceTree = SOURCE_ROOT; };
A774104614696F320098E6AC /* myseqdist.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = myseqdist.cpp; path = source/myseqdist.cpp; sourceTree = SOURCE_ROOT; };
A774104714696F320098E6AC /* myseqdist.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = myseqdist.h; path = source/myseqdist.h; sourceTree = SOURCE_ROOT; };
A77410F414697C300098E6AC /* seqnoise.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = seqnoise.cpp; path = source/seqnoise.cpp; sourceTree = SOURCE_ROOT; };
A77410F514697C300098E6AC /* seqnoise.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = seqnoise.h; path = source/seqnoise.h; sourceTree = SOURCE_ROOT; };
A77916E6176F7F7600EEFE18 /* designmap.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = designmap.cpp; path = source/datastructures/designmap.cpp; sourceTree = SOURCE_ROOT; };
A77916E7176F7F7600EEFE18 /* designmap.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = designmap.h; path = source/datastructures/designmap.h; sourceTree = SOURCE_ROOT; };
A77A221D139001B600B0BE70 /* deuniquetreecommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = deuniquetreecommand.h; path = source/commands/deuniquetreecommand.h; sourceTree = SOURCE_ROOT; };
A77A221E139001B600B0BE70 /* deuniquetreecommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = deuniquetreecommand.cpp; path = source/commands/deuniquetreecommand.cpp; sourceTree = SOURCE_ROOT; };
A77B7183173D222F002163C2 /* sparcccommand.h */ = {isa = PBXFileReference; lastKnownFileType = sourcecode.c.h; name = sparcccommand.h; path = source/commands/sparcccommand.h; sourceTree = SOURCE_ROOT; };
A77B7184173D2240002163C2 /* sparcccommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = sparcccommand.cpp; path = source/commands/sparcccommand.cpp; sourceTree = SOURCE_ROOT; };
A77B7189173D40E4002163C2 /* calcsparcc.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = calcsparcc.cpp; path = source/calcsparcc.cpp; sourceTree = SOURCE_ROOT; };
A77B718A173D40E4002163C2 /* calcsparcc.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = calcsparcc.h; path = source/calcsparcc.h; sourceTree = SOURCE_ROOT; };
A77EBD2C1523707F00ED407C /* createdatabasecommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = createdatabasecommand.h; path = source/commands/createdatabasecommand.h; sourceTree = SOURCE_ROOT; };
A77EBD2E1523709100ED407C /* createdatabasecommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = createdatabasecommand.cpp; path = source/commands/createdatabasecommand.cpp; sourceTree = SOURCE_ROOT; };
A7876A25152A017C00A0AE86 /* subsample.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = subsample.cpp; path = source/subsample.cpp; sourceTree = SOURCE_ROOT; };
A7876A28152A018B00A0AE86 /* subsample.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = subsample.h; path = source/subsample.h; sourceTree = SOURCE_ROOT; };
A79234D513C74BF6002B08E2 /* mothurfisher.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = mothurfisher.h; path = source/metastats/mothurfisher.h; sourceTree = SOURCE_ROOT; };
A79234D613C74BF6002B08E2 /* mothurfisher.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = mothurfisher.cpp; path = source/metastats/mothurfisher.cpp; sourceTree = SOURCE_ROOT; };
A795840B13F13CD900F201D5 /* countgroupscommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = countgroupscommand.h; path = source/commands/countgroupscommand.h; sourceTree = SOURCE_ROOT; };
A795840C13F13CD900F201D5 /* countgroupscommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = countgroupscommand.cpp; path = source/commands/countgroupscommand.cpp; sourceTree = SOURCE_ROOT; };
A799314816CBD0BC0017E888 /* mergetaxsummarycommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = mergetaxsummarycommand.h; path = source/commands/mergetaxsummarycommand.h; sourceTree = SOURCE_ROOT; };
A799314A16CBD0CD0017E888 /* mergetaxsummarycommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = mergetaxsummarycommand.cpp; path = source/commands/mergetaxsummarycommand.cpp; sourceTree = SOURCE_ROOT; };
A799F5B71309A3E000AEEFA0 /* makefastqcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = makefastqcommand.h; path = source/commands/makefastqcommand.h; sourceTree = SOURCE_ROOT; };
A799F5B81309A3E000AEEFA0 /* makefastqcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = makefastqcommand.cpp; path = source/commands/makefastqcommand.cpp; sourceTree = SOURCE_ROOT; };
A79EEF8516971D4A0006DEC1 /* filtersharedcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = filtersharedcommand.cpp; path = source/commands/filtersharedcommand.cpp; sourceTree = SOURCE_ROOT; };
A79EEF8816971D640006DEC1 /* filtersharedcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = filtersharedcommand.h; path = source/commands/filtersharedcommand.h; sourceTree = SOURCE_ROOT; };
A7A067191562946F0095C8C5 /* listotuscommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = listotuscommand.cpp; path = source/commands/listotuscommand.cpp; sourceTree = SOURCE_ROOT; };
A7A0671C156294810095C8C5 /* listotuscommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = listotuscommand.h; path = source/commands/listotuscommand.h; sourceTree = SOURCE_ROOT; };
A7A0671D1562AC230095C8C5 /* makecontigscommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = makecontigscommand.h; path = source/commands/makecontigscommand.h; sourceTree = SOURCE_ROOT; };
A7A0671E1562AC3E0095C8C5 /* makecontigscommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = makecontigscommand.cpp; path = source/commands/makecontigscommand.cpp; sourceTree = SOURCE_ROOT; };
A7A09B0E18773BF700FAA081 /* shannonrange.h */ = {isa = PBXFileReference; lastKnownFileType = sourcecode.c.h; name = shannonrange.h; path = source/calculators/shannonrange.h; sourceTree = SOURCE_ROOT; };
A7A09B0F18773C0E00FAA081 /* shannonrange.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = shannonrange.cpp; path = source/calculators/shannonrange.cpp; sourceTree = SOURCE_ROOT; };
A7A32DA914DC43B00001D2E5 /* sortseqscommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = sortseqscommand.cpp; path = source/commands/sortseqscommand.cpp; sourceTree = SOURCE_ROOT; };
A7A32DAC14DC43D10001D2E5 /* sortseqscommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = sortseqscommand.h; path = source/commands/sortseqscommand.h; sourceTree = SOURCE_ROOT; };
A7A3C8C714D041AD00B1BFBE /* otuassociationcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = otuassociationcommand.cpp; path = source/commands/otuassociationcommand.cpp; sourceTree = SOURCE_ROOT; };
A7A3C8C814D041AD00B1BFBE /* otuassociationcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = otuassociationcommand.h; path = source/commands/otuassociationcommand.h; sourceTree = SOURCE_ROOT; };
A7A61F1A130035C800E05B6B /* LICENSE.md */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = net.daringfireball.markdown; path = LICENSE.md; sourceTree = SOURCE_ROOT; };
A7A61F2B130062E000E05B6B /* amovacommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = amovacommand.h; path = source/commands/amovacommand.h; sourceTree = SOURCE_ROOT; };
A7A61F2C130062E000E05B6B /* amovacommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = amovacommand.cpp; path = source/commands/amovacommand.cpp; sourceTree = SOURCE_ROOT; };
A7AACFBA132FE008003D6C4D /* currentfile.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = currentfile.h; path = source/currentfile.h; sourceTree = SOURCE_ROOT; };
A7B0231416B8244B006BA09E /* removedistscommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = removedistscommand.cpp; path = source/commands/removedistscommand.cpp; sourceTree = SOURCE_ROOT; };
A7B0231716B8245D006BA09E /* removedistscommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = removedistscommand.h; path = source/commands/removedistscommand.h; sourceTree = SOURCE_ROOT; };
A7B093BE18579EF600843CD1 /* pam.h */ = {isa = PBXFileReference; lastKnownFileType = sourcecode.c.h; name = pam.h; path = source/communitytype/pam.h; sourceTree = SOURCE_ROOT; };
A7B093BF18579F0400843CD1 /* pam.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = pam.cpp; path = source/communitytype/pam.cpp; sourceTree = SOURCE_ROOT; };
A7BF221214587886000AD524 /* myPerseus.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = myPerseus.cpp; path = source/chimera/myPerseus.cpp; sourceTree = SOURCE_ROOT; };
A7BF221314587886000AD524 /* myPerseus.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = myPerseus.h; path = source/chimera/myPerseus.h; sourceTree = SOURCE_ROOT; };
A7BF2230145879B2000AD524 /* chimeraperseuscommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = chimeraperseuscommand.h; path = source/commands/chimeraperseuscommand.h; sourceTree = SOURCE_ROOT; };
A7BF2231145879B2000AD524 /* chimeraperseuscommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = chimeraperseuscommand.cpp; path = source/commands/chimeraperseuscommand.cpp; sourceTree = SOURCE_ROOT; };
A7C3DC0914FE457500FE1924 /* cooccurrencecommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = cooccurrencecommand.cpp; path = source/commands/cooccurrencecommand.cpp; sourceTree = SOURCE_ROOT; };
A7C3DC0A14FE457500FE1924 /* cooccurrencecommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = cooccurrencecommand.h; path = source/commands/cooccurrencecommand.h; sourceTree = SOURCE_ROOT; };
A7C3DC0D14FE469500FE1924 /* trialSwap2.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = trialSwap2.cpp; path = source/trialSwap2.cpp; sourceTree = SOURCE_ROOT; };
A7C3DC0E14FE469500FE1924 /* trialswap2.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = trialswap2.h; path = source/trialswap2.h; sourceTree = SOURCE_ROOT; };
A7C7DAB615DA75760059B0CF /* sffmultiplecommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = sffmultiplecommand.h; path = source/commands/sffmultiplecommand.h; sourceTree = SOURCE_ROOT; };
A7C7DAB815DA758B0059B0CF /* sffmultiplecommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = sffmultiplecommand.cpp; path = source/commands/sffmultiplecommand.cpp; sourceTree = SOURCE_ROOT; };
A7CFA42F1755400500D9ED4D /* renameseqscommand.h */ = {isa = PBXFileReference; lastKnownFileType = sourcecode.c.h; name = renameseqscommand.h; path = source/commands/renameseqscommand.h; sourceTree = SOURCE_ROOT; };
A7CFA4301755401800D9ED4D /* renameseqscommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = renameseqscommand.cpp; path = source/commands/renameseqscommand.cpp; sourceTree = SOURCE_ROOT; };
A7D395C2184FA39300A350D7 /* kmeans.h */ = {isa = PBXFileReference; lastKnownFileType = sourcecode.c.h; name = kmeans.h; path = source/communitytype/kmeans.h; sourceTree = SOURCE_ROOT; };
A7D395C3184FA3A200A350D7 /* kmeans.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = kmeans.cpp; path = source/communitytype/kmeans.cpp; sourceTree = SOURCE_ROOT; };
A7D755D71535F665009BF21A /* treereader.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = treereader.h; path = source/read/treereader.h; sourceTree = SOURCE_ROOT; };
A7D755D91535F679009BF21A /* treereader.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = treereader.cpp; path = source/read/treereader.cpp; sourceTree = SOURCE_ROOT; };
A7D9378917B146B5001E90B0 /* wilcox.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = wilcox.cpp; path = source/wilcox.cpp; sourceTree = SOURCE_ROOT; };
A7D9378B17B15215001E90B0 /* wilcox.h */ = {isa = PBXFileReference; lastKnownFileType = sourcecode.c.h; name = wilcox.h; path = source/wilcox.h; sourceTree = SOURCE_ROOT; };
A7DAAFA3133A254E003956EB /* commandparameter.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = commandparameter.h; path = source/commandparameter.h; sourceTree = SOURCE_ROOT; };
A7E0243C15B4520A00A5F046 /* sparsedistancematrix.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = sparsedistancematrix.cpp; path = source/datastructures/sparsedistancematrix.cpp; sourceTree = SOURCE_ROOT; };
A7E0243F15B4522000A5F046 /* sparsedistancematrix.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = sparsedistancematrix.h; path = source/datastructures/sparsedistancematrix.h; sourceTree = SOURCE_ROOT; };
A7E6F69C17427CF2006775E2 /* makelookupcommand.h */ = {isa = PBXFileReference; lastKnownFileType = sourcecode.c.h; name = makelookupcommand.h; path = source/commands/makelookupcommand.h; sourceTree = SOURCE_ROOT; };
A7E6F69D17427D06006775E2 /* makelookupcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = makelookupcommand.cpp; path = source/commands/makelookupcommand.cpp; sourceTree = SOURCE_ROOT; };
A7E9B64F12D37EC300DA6239 /* ace.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = ace.cpp; path = source/calculators/ace.cpp; sourceTree = SOURCE_ROOT; };
A7E9B65012D37EC300DA6239 /* ace.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = ace.h; path = source/calculators/ace.h; sourceTree = SOURCE_ROOT; };
A7E9B65112D37EC300DA6239 /* aligncommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = aligncommand.cpp; path = source/commands/aligncommand.cpp; sourceTree = SOURCE_ROOT; };
A7E9B65212D37EC300DA6239 /* aligncommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = aligncommand.h; path = source/commands/aligncommand.h; sourceTree = SOURCE_ROOT; };
A7E9B65312D37EC300DA6239 /* alignment.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = alignment.cpp; path = source/datastructures/alignment.cpp; sourceTree = SOURCE_ROOT; };
A7E9B65412D37EC300DA6239 /* alignment.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; name = alignment.hpp; path = source/datastructures/alignment.hpp; sourceTree = SOURCE_ROOT; };
A7E9B65512D37EC300DA6239 /* alignmentcell.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = alignmentcell.cpp; path = source/datastructures/alignmentcell.cpp; sourceTree = SOURCE_ROOT; };
A7E9B65612D37EC300DA6239 /* alignmentcell.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; name = alignmentcell.hpp; path = source/datastructures/alignmentcell.hpp; sourceTree = SOURCE_ROOT; };
A7E9B65712D37EC300DA6239 /* alignmentdb.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = alignmentdb.cpp; path = source/datastructures/alignmentdb.cpp; sourceTree = SOURCE_ROOT; };
A7E9B65812D37EC300DA6239 /* alignmentdb.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = alignmentdb.h; path = source/datastructures/alignmentdb.h; sourceTree = SOURCE_ROOT; };
A7E9B65A12D37EC300DA6239 /* bayesian.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = bayesian.cpp; path = source/classifier/bayesian.cpp; sourceTree = SOURCE_ROOT; };
A7E9B65B12D37EC300DA6239 /* bayesian.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = bayesian.h; path = source/classifier/bayesian.h; sourceTree = SOURCE_ROOT; };
A7E9B65C12D37EC300DA6239 /* bellerophon.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = bellerophon.cpp; path = source/chimera/bellerophon.cpp; sourceTree = SOURCE_ROOT; };
A7E9B65D12D37EC300DA6239 /* bellerophon.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = bellerophon.h; path = source/chimera/bellerophon.h; sourceTree = SOURCE_ROOT; };
A7E9B65E12D37EC300DA6239 /* bergerparker.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = bergerparker.cpp; path = source/calculators/bergerparker.cpp; sourceTree = SOURCE_ROOT; };
A7E9B65F12D37EC300DA6239 /* bergerparker.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = bergerparker.h; path = source/calculators/bergerparker.h; sourceTree = SOURCE_ROOT; };
A7E9B66012D37EC300DA6239 /* binsequencecommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = binsequencecommand.cpp; path = source/commands/binsequencecommand.cpp; sourceTree = SOURCE_ROOT; };
A7E9B66112D37EC300DA6239 /* binsequencecommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = binsequencecommand.h; path = source/commands/binsequencecommand.h; sourceTree = SOURCE_ROOT; };
A7E9B66612D37EC400DA6239 /* boneh.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = boneh.cpp; path = source/calculators/boneh.cpp; sourceTree = SOURCE_ROOT; };
A7E9B66712D37EC400DA6239 /* boneh.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = boneh.h; path = source/calculators/boneh.h; sourceTree = SOURCE_ROOT; };
A7E9B66812D37EC400DA6239 /* bootstrap.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = bootstrap.cpp; path = source/calculators/bootstrap.cpp; sourceTree = SOURCE_ROOT; };
A7E9B66912D37EC400DA6239 /* bootstrap.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = bootstrap.h; path = source/calculators/bootstrap.h; sourceTree = SOURCE_ROOT; };
A7E9B66C12D37EC400DA6239 /* bstick.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = bstick.cpp; path = source/calculators/bstick.cpp; sourceTree = SOURCE_ROOT; };
A7E9B66D12D37EC400DA6239 /* bstick.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = bstick.h; path = source/calculators/bstick.h; sourceTree = SOURCE_ROOT; };
A7E9B66F12D37EC400DA6239 /* calculator.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = calculator.h; path = source/calculators/calculator.h; sourceTree = SOURCE_ROOT; };
A7E9B67012D37EC400DA6239 /* canberra.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = canberra.cpp; path = source/calculators/canberra.cpp; sourceTree = SOURCE_ROOT; };
A7E9B67112D37EC400DA6239 /* canberra.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = canberra.h; path = source/calculators/canberra.h; sourceTree = SOURCE_ROOT; };
A7E9B67412D37EC400DA6239 /* ccode.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = ccode.cpp; path = source/chimera/ccode.cpp; sourceTree = SOURCE_ROOT; };
A7E9B67512D37EC400DA6239 /* ccode.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; lineEnding = 0; name = ccode.h; path = source/chimera/ccode.h; sourceTree = SOURCE_ROOT; xcLanguageSpecificationIdentifier = xcode.lang.objcpp; };
A7E9B67612D37EC400DA6239 /* chao1.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = chao1.cpp; path = source/calculators/chao1.cpp; sourceTree = SOURCE_ROOT; };
A7E9B67712D37EC400DA6239 /* chao1.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = chao1.h; path = source/calculators/chao1.h; sourceTree = SOURCE_ROOT; };
A7E9B67812D37EC400DA6239 /* mothurchimera.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = mothurchimera.cpp; path = source/chimera/mothurchimera.cpp; sourceTree = SOURCE_ROOT; };
A7E9B67912D37EC400DA6239 /* mothurchimera.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = mothurchimera.h; path = source/chimera/mothurchimera.h; sourceTree = SOURCE_ROOT; };
A7E9B67A12D37EC400DA6239 /* chimerabellerophoncommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = chimerabellerophoncommand.cpp; path = source/commands/chimerabellerophoncommand.cpp; sourceTree = SOURCE_ROOT; };
A7E9B67B12D37EC400DA6239 /* chimerabellerophoncommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = chimerabellerophoncommand.h; path = source/commands/chimerabellerophoncommand.h; sourceTree = SOURCE_ROOT; };
A7E9B67C12D37EC400DA6239 /* chimeraccodecommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; lineEnding = 0; name = chimeraccodecommand.cpp; path = source/commands/chimeraccodecommand.cpp; sourceTree = SOURCE_ROOT; xcLanguageSpecificationIdentifier = xcode.lang.cpp; };
A7E9B67D12D37EC400DA6239 /* chimeraccodecommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = chimeraccodecommand.h; path = source/commands/chimeraccodecommand.h; sourceTree = SOURCE_ROOT; };
A7E9B67E12D37EC400DA6239 /* chimeracheckcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; lineEnding = 0; name = chimeracheckcommand.cpp; path = source/commands/chimeracheckcommand.cpp; sourceTree = SOURCE_ROOT; xcLanguageSpecificationIdentifier = xcode.lang.cpp; };
A7E9B67F12D37EC400DA6239 /* chimeracheckcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = chimeracheckcommand.h; path = source/commands/chimeracheckcommand.h; sourceTree = SOURCE_ROOT; };
A7E9B68012D37EC400DA6239 /* chimeracheckrdp.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = chimeracheckrdp.cpp; path = source/chimera/chimeracheckrdp.cpp; sourceTree = SOURCE_ROOT; };
A7E9B68112D37EC400DA6239 /* chimeracheckrdp.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; lineEnding = 0; name = chimeracheckrdp.h; path = source/chimera/chimeracheckrdp.h; sourceTree = SOURCE_ROOT; xcLanguageSpecificationIdentifier = xcode.lang.objcpp; };
A7E9B68212D37EC400DA6239 /* chimerapintailcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; lineEnding = 0; name = chimerapintailcommand.cpp; path = source/commands/chimerapintailcommand.cpp; sourceTree = SOURCE_ROOT; xcLanguageSpecificationIdentifier = xcode.lang.cpp; };
A7E9B68312D37EC400DA6239 /* chimerapintailcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = chimerapintailcommand.h; path = source/commands/chimerapintailcommand.h; sourceTree = SOURCE_ROOT; };
A7E9B68412D37EC400DA6239 /* chimerarealigner.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = chimerarealigner.cpp; path = source/chimera/chimerarealigner.cpp; sourceTree = SOURCE_ROOT; };
A7E9B68512D37EC400DA6239 /* chimerarealigner.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = chimerarealigner.h; path = source/chimera/chimerarealigner.h; sourceTree = SOURCE_ROOT; };
A7E9B68812D37EC400DA6239 /* chimeraslayer.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = chimeraslayer.cpp; path = source/chimera/chimeraslayer.cpp; sourceTree = SOURCE_ROOT; };
A7E9B68912D37EC400DA6239 /* chimeraslayer.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = chimeraslayer.h; path = source/chimera/chimeraslayer.h; sourceTree = SOURCE_ROOT; };
A7E9B68A12D37EC400DA6239 /* chimeraslayercommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = chimeraslayercommand.cpp; path = source/commands/chimeraslayercommand.cpp; sourceTree = SOURCE_ROOT; };
A7E9B68B12D37EC400DA6239 /* chimeraslayercommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = chimeraslayercommand.h; path = source/commands/chimeraslayercommand.h; sourceTree = SOURCE_ROOT; };
A7E9B68C12D37EC400DA6239 /* chopseqscommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; lineEnding = 0; name = chopseqscommand.cpp; path = source/commands/chopseqscommand.cpp; sourceTree = SOURCE_ROOT; xcLanguageSpecificationIdentifier = xcode.lang.cpp; };
A7E9B68D12D37EC400DA6239 /* chopseqscommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = chopseqscommand.h; path = source/commands/chopseqscommand.h; sourceTree = SOURCE_ROOT; };
A7E9B68E12D37EC400DA6239 /* classify.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = classify.cpp; path = source/classifier/classify.cpp; sourceTree = SOURCE_ROOT; };
A7E9B68F12D37EC400DA6239 /* classify.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = classify.h; path = source/classifier/classify.h; sourceTree = SOURCE_ROOT; };
A7E9B69012D37EC400DA6239 /* classifyotucommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = classifyotucommand.cpp; path = source/commands/classifyotucommand.cpp; sourceTree = SOURCE_ROOT; };
A7E9B69112D37EC400DA6239 /* classifyotucommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = classifyotucommand.h; path = source/commands/classifyotucommand.h; sourceTree = SOURCE_ROOT; };
A7E9B69212D37EC400DA6239 /* classifyseqscommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = classifyseqscommand.cpp; path = source/commands/classifyseqscommand.cpp; sourceTree = SOURCE_ROOT; };
A7E9B69312D37EC400DA6239 /* classifyseqscommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = classifyseqscommand.h; path = source/commands/classifyseqscommand.h; sourceTree = SOURCE_ROOT; };
A7E9B69412D37EC400DA6239 /* clearcut.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = clearcut.cpp; path = source/clearcut/clearcut.cpp; sourceTree = SOURCE_ROOT; };
A7E9B69512D37EC400DA6239 /* clearcut.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = clearcut.h; path = source/clearcut/clearcut.h; sourceTree = SOURCE_ROOT; };
A7E9B69612D37EC400DA6239 /* clearcutcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = clearcutcommand.cpp; path = source/commands/clearcutcommand.cpp; sourceTree = SOURCE_ROOT; };
A7E9B69712D37EC400DA6239 /* clearcutcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = clearcutcommand.h; path = source/commands/clearcutcommand.h; sourceTree = SOURCE_ROOT; };
A7E9B69812D37EC400DA6239 /* cluster.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = cluster.cpp; path = source/cluster.cpp; sourceTree = SOURCE_ROOT; };
A7E9B69912D37EC400DA6239 /* cluster.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; name = cluster.hpp; path = source/cluster.hpp; sourceTree = SOURCE_ROOT; };
A7E9B69A12D37EC400DA6239 /* clusterclassic.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = clusterclassic.cpp; path = source/clusterclassic.cpp; sourceTree = SOURCE_ROOT; };
A7E9B69B12D37EC400DA6239 /* clusterclassic.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = clusterclassic.h; path = source/clusterclassic.h; sourceTree = SOURCE_ROOT; };
A7E9B69C12D37EC400DA6239 /* clustercommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = clustercommand.cpp; path = source/commands/clustercommand.cpp; sourceTree = SOURCE_ROOT; };
A7E9B69D12D37EC400DA6239 /* clustercommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; lineEnding = 0; name = clustercommand.h; path = source/commands/clustercommand.h; sourceTree = SOURCE_ROOT; xcLanguageSpecificationIdentifier = xcode.lang.objcpp; };
A7E9B69E12D37EC400DA6239 /* clusterdoturcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = clusterdoturcommand.cpp; path = source/commands/clusterdoturcommand.cpp; sourceTree = SOURCE_ROOT; };
A7E9B69F12D37EC400DA6239 /* clusterdoturcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = clusterdoturcommand.h; path = source/commands/clusterdoturcommand.h; sourceTree = SOURCE_ROOT; };
A7E9B6A012D37EC400DA6239 /* clusterfragmentscommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = clusterfragmentscommand.cpp; path = source/commands/clusterfragmentscommand.cpp; sourceTree = SOURCE_ROOT; };
A7E9B6A112D37EC400DA6239 /* clusterfragmentscommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = clusterfragmentscommand.h; path = source/commands/clusterfragmentscommand.h; sourceTree = SOURCE_ROOT; };
A7E9B6A212D37EC400DA6239 /* clustersplitcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; lineEnding = 0; name = clustersplitcommand.cpp; path = source/commands/clustersplitcommand.cpp; sourceTree = SOURCE_ROOT; xcLanguageSpecificationIdentifier = xcode.lang.cpp; };
A7E9B6A312D37EC400DA6239 /* clustersplitcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = clustersplitcommand.h; path = source/commands/clustersplitcommand.h; sourceTree = SOURCE_ROOT; };
A7E9B6A412D37EC400DA6239 /* cmdargs.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = cmdargs.cpp; path = source/clearcut/cmdargs.cpp; sourceTree = SOURCE_ROOT; };
A7E9B6A512D37EC400DA6239 /* cmdargs.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = cmdargs.h; path = source/clearcut/cmdargs.h; sourceTree = SOURCE_ROOT; };
A7E9B6A612D37EC400DA6239 /* collect.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = collect.cpp; path = source/collect.cpp; sourceTree = SOURCE_ROOT; };
A7E9B6A712D37EC400DA6239 /* collect.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = collect.h; path = source/collect.h; sourceTree = SOURCE_ROOT; };
A7E9B6A812D37EC400DA6239 /* collectcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = collectcommand.cpp; path = source/commands/collectcommand.cpp; sourceTree = SOURCE_ROOT; };
A7E9B6A912D37EC400DA6239 /* collectcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = collectcommand.h; path = source/commands/collectcommand.h; sourceTree = SOURCE_ROOT; };
A7E9B6AA12D37EC400DA6239 /* collectdisplay.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = collectdisplay.h; path = source/collectdisplay.h; sourceTree = SOURCE_ROOT; };
A7E9B6AB12D37EC400DA6239 /* collectorscurvedata.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = collectorscurvedata.h; path = source/collectorscurvedata.h; sourceTree = SOURCE_ROOT; };
A7E9B6AC12D37EC400DA6239 /* collectsharedcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = collectsharedcommand.cpp; path = source/commands/collectsharedcommand.cpp; sourceTree = SOURCE_ROOT; };
A7E9B6AD12D37EC400DA6239 /* collectsharedcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = collectsharedcommand.h; path = source/commands/collectsharedcommand.h; sourceTree = SOURCE_ROOT; };
A7E9B6AE12D37EC400DA6239 /* command.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; name = command.hpp; path = source/commands/command.hpp; sourceTree = SOURCE_ROOT; };
A7E9B6AF12D37EC400DA6239 /* commandfactory.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = commandfactory.cpp; path = source/commandfactory.cpp; sourceTree = SOURCE_ROOT; };
A7E9B6B012D37EC400DA6239 /* commandfactory.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; name = commandfactory.hpp; path = source/commandfactory.hpp; sourceTree = SOURCE_ROOT; };
A7E9B6B112D37EC400DA6239 /* commandoptionparser.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = commandoptionparser.cpp; path = source/commandoptionparser.cpp; sourceTree = SOURCE_ROOT; };
A7E9B6B212D37EC400DA6239 /* commandoptionparser.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; name = commandoptionparser.hpp; path = source/commandoptionparser.hpp; sourceTree = SOURCE_ROOT; };
A7E9B6B312D37EC400DA6239 /* common.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = common.h; path = source/clearcut/common.h; sourceTree = SOURCE_ROOT; };
A7E9B6B512D37EC400DA6239 /* consensus.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = consensus.cpp; path = source/consensus.cpp; sourceTree = SOURCE_ROOT; };
A7E9B6B612D37EC400DA6239 /* consensus.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = consensus.h; path = source/consensus.h; sourceTree = SOURCE_ROOT; };
A7E9B6B712D37EC400DA6239 /* consensusseqscommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; lineEnding = 0; name = consensusseqscommand.cpp; path = source/commands/consensusseqscommand.cpp; sourceTree = SOURCE_ROOT; xcLanguageSpecificationIdentifier = xcode.lang.cpp; };
A7E9B6B812D37EC400DA6239 /* consensusseqscommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = consensusseqscommand.h; path = source/commands/consensusseqscommand.h; sourceTree = SOURCE_ROOT; };
A7E9B6B912D37EC400DA6239 /* corraxescommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = corraxescommand.cpp; path = source/commands/corraxescommand.cpp; sourceTree = SOURCE_ROOT; };
A7E9B6BA12D37EC400DA6239 /* corraxescommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = corraxescommand.h; path = source/commands/corraxescommand.h; sourceTree = SOURCE_ROOT; };
A7E9B6BB12D37EC400DA6239 /* coverage.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = coverage.cpp; path = source/calculators/coverage.cpp; sourceTree = SOURCE_ROOT; };
A7E9B6BC12D37EC400DA6239 /* coverage.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = coverage.h; path = source/calculators/coverage.h; sourceTree = SOURCE_ROOT; };
A7E9B6BE12D37EC400DA6239 /* searchdatabase.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; name = searchdatabase.hpp; path = source/datastructures/searchdatabase.hpp; sourceTree = SOURCE_ROOT; };
A7E9B6BF12D37EC400DA6239 /* datavector.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; name = datavector.hpp; path = source/datastructures/datavector.hpp; sourceTree = SOURCE_ROOT; };
A7E9B6C012D37EC400DA6239 /* dayhoff.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = dayhoff.h; path = source/calculators/dayhoff.h; sourceTree = SOURCE_ROOT; };
A7E9B6C112D37EC400DA6239 /* decalc.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = decalc.cpp; path = source/chimera/decalc.cpp; sourceTree = SOURCE_ROOT; };
A7E9B6C212D37EC400DA6239 /* decalc.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; lineEnding = 0; name = decalc.h; path = source/chimera/decalc.h; sourceTree = SOURCE_ROOT; xcLanguageSpecificationIdentifier = xcode.lang.objcpp; };
A7E9B6C312D37EC400DA6239 /* uniqueseqscommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = uniqueseqscommand.cpp; path = source/commands/uniqueseqscommand.cpp; sourceTree = SOURCE_ROOT; };
A7E9B6C412D37EC400DA6239 /* uniqueseqscommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = uniqueseqscommand.h; path = source/commands/uniqueseqscommand.h; sourceTree = SOURCE_ROOT; };
A7E9B6C512D37EC400DA6239 /* degapseqscommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; lineEnding = 0; name = degapseqscommand.cpp; path = source/commands/degapseqscommand.cpp; sourceTree = SOURCE_ROOT; xcLanguageSpecificationIdentifier = xcode.lang.cpp; };
A7E9B6C612D37EC400DA6239 /* degapseqscommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = degapseqscommand.h; path = source/commands/degapseqscommand.h; sourceTree = SOURCE_ROOT; };
A7E9B6C712D37EC400DA6239 /* deuniqueseqscommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = deuniqueseqscommand.cpp; path = source/commands/deuniqueseqscommand.cpp; sourceTree = SOURCE_ROOT; };
A7E9B6C812D37EC400DA6239 /* deuniqueseqscommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = deuniqueseqscommand.h; path = source/commands/deuniqueseqscommand.h; sourceTree = SOURCE_ROOT; };
A7E9B6C912D37EC400DA6239 /* display.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = display.h; path = source/display.h; sourceTree = SOURCE_ROOT; };
A7E9B6CB12D37EC400DA6239 /* distancecommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; lineEnding = 0; name = distancecommand.cpp; path = source/commands/distancecommand.cpp; sourceTree = SOURCE_ROOT; xcLanguageSpecificationIdentifier = xcode.lang.cpp; };
A7E9B6CC12D37EC400DA6239 /* distancecommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = distancecommand.h; path = source/commands/distancecommand.h; sourceTree = SOURCE_ROOT; };
A7E9B6CD12D37EC400DA6239 /* distancedb.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = distancedb.cpp; path = source/datastructures/distancedb.cpp; sourceTree = SOURCE_ROOT; };
A7E9B6CE12D37EC400DA6239 /* distancedb.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; name = distancedb.hpp; path = source/datastructures/distancedb.hpp; sourceTree = SOURCE_ROOT; };
A7E9B6CF12D37EC400DA6239 /* distclearcut.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = distclearcut.cpp; path = source/clearcut/distclearcut.cpp; sourceTree = SOURCE_ROOT; };
A7E9B6D012D37EC400DA6239 /* distclearcut.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = distclearcut.h; path = source/clearcut/distclearcut.h; sourceTree = SOURCE_ROOT; };
A7E9B6D112D37EC400DA6239 /* dlibshuff.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = dlibshuff.cpp; path = source/dlibshuff.cpp; sourceTree = SOURCE_ROOT; };
A7E9B6D212D37EC400DA6239 /* dlibshuff.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = dlibshuff.h; path = source/dlibshuff.h; sourceTree = SOURCE_ROOT; };
A7E9B6D312D37EC400DA6239 /* dmat.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = dmat.cpp; path = source/clearcut/dmat.cpp; sourceTree = SOURCE_ROOT; };
A7E9B6D412D37EC400DA6239 /* dmat.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = dmat.h; path = source/clearcut/dmat.h; sourceTree = SOURCE_ROOT; };
A7E9B6D512D37EC400DA6239 /* eachgapdist.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = eachgapdist.h; path = source/calculators/eachgapdist.h; sourceTree = SOURCE_ROOT; };
A7E9B6D612D37EC400DA6239 /* eachgapignore.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = eachgapignore.h; path = source/calculators/eachgapignore.h; sourceTree = SOURCE_ROOT; };
A7E9B6D712D37EC400DA6239 /* efron.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = efron.cpp; path = source/calculators/efron.cpp; sourceTree = SOURCE_ROOT; };
A7E9B6D812D37EC400DA6239 /* efron.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = efron.h; path = source/calculators/efron.h; sourceTree = SOURCE_ROOT; };
A7E9B6D912D37EC400DA6239 /* endiannessmacros.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = endiannessmacros.h; path = source/endiannessmacros.h; sourceTree = SOURCE_ROOT; };
A7E9B6DB12D37EC400DA6239 /* engine.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; name = engine.hpp; path = source/engines/engine.hpp; sourceTree = SOURCE_ROOT; };
A7E9B6DC12D37EC400DA6239 /* fasta.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = fasta.cpp; path = source/clearcut/fasta.cpp; sourceTree = SOURCE_ROOT; };
A7E9B6DD12D37EC400DA6239 /* fasta.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = fasta.h; path = source/clearcut/fasta.h; sourceTree = SOURCE_ROOT; };
A7E9B6DE12D37EC400DA6239 /* fastamap.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = fastamap.cpp; path = source/datastructures/fastamap.cpp; sourceTree = SOURCE_ROOT; };
A7E9B6DF12D37EC400DA6239 /* fastamap.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = fastamap.h; path = source/datastructures/fastamap.h; sourceTree = SOURCE_ROOT; };
A7E9B6E012D37EC400DA6239 /* fileoutput.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = fileoutput.cpp; path = source/fileoutput.cpp; sourceTree = SOURCE_ROOT; };
A7E9B6E112D37EC400DA6239 /* fileoutput.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = fileoutput.h; path = source/fileoutput.h; sourceTree = SOURCE_ROOT; };
A7E9B6E212D37EC400DA6239 /* filters.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = filters.h; path = source/calculators/filters.h; sourceTree = SOURCE_ROOT; };
A7E9B6E312D37EC400DA6239 /* filterseqscommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = filterseqscommand.cpp; path = source/commands/filterseqscommand.cpp; sourceTree = SOURCE_ROOT; };
A7E9B6E412D37EC400DA6239 /* filterseqscommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = filterseqscommand.h; path = source/commands/filterseqscommand.h; sourceTree = SOURCE_ROOT; };
A7E9B6E712D37EC400DA6239 /* flowdata.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = flowdata.cpp; path = source/datastructures/flowdata.cpp; sourceTree = SOURCE_ROOT; };
A7E9B6E812D37EC400DA6239 /* flowdata.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = flowdata.h; path = source/datastructures/flowdata.h; sourceTree = SOURCE_ROOT; };
A7E9B6EE12D37EC400DA6239 /* fullmatrix.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = fullmatrix.cpp; path = source/datastructures/fullmatrix.cpp; sourceTree = SOURCE_ROOT; };
A7E9B6EF12D37EC400DA6239 /* fullmatrix.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = fullmatrix.h; path = source/datastructures/fullmatrix.h; sourceTree = SOURCE_ROOT; };
A7E9B6F012D37EC400DA6239 /* geom.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = geom.cpp; path = source/calculators/geom.cpp; sourceTree = SOURCE_ROOT; };
A7E9B6F112D37EC400DA6239 /* geom.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = geom.h; path = source/calculators/geom.h; sourceTree = SOURCE_ROOT; };
A7E9B6F212D37EC400DA6239 /* getgroupcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; lineEnding = 0; name = getgroupcommand.cpp; path = source/commands/getgroupcommand.cpp; sourceTree = SOURCE_ROOT; xcLanguageSpecificationIdentifier = xcode.lang.cpp; };
A7E9B6F312D37EC400DA6239 /* getgroupcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = getgroupcommand.h; path = source/commands/getgroupcommand.h; sourceTree = SOURCE_ROOT; };
A7E9B6F412D37EC400DA6239 /* getgroupscommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = getgroupscommand.cpp; path = source/commands/getgroupscommand.cpp; sourceTree = SOURCE_ROOT; };
A7E9B6F512D37EC400DA6239 /* getgroupscommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = getgroupscommand.h; path = source/commands/getgroupscommand.h; sourceTree = SOURCE_ROOT; };
A7E9B6F612D37EC400DA6239 /* getlabelcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = getlabelcommand.cpp; path = source/commands/getlabelcommand.cpp; sourceTree = SOURCE_ROOT; };
A7E9B6F712D37EC400DA6239 /* getlabelcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = getlabelcommand.h; path = source/commands/getlabelcommand.h; sourceTree = SOURCE_ROOT; };
A7E9B6F812D37EC400DA6239 /* getlineagecommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = getlineagecommand.cpp; path = source/commands/getlineagecommand.cpp; sourceTree = SOURCE_ROOT; };
A7E9B6F912D37EC400DA6239 /* getlineagecommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = getlineagecommand.h; path = source/commands/getlineagecommand.h; sourceTree = SOURCE_ROOT; };
A7E9B6FA12D37EC400DA6239 /* getlistcountcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = getlistcountcommand.cpp; path = source/commands/getlistcountcommand.cpp; sourceTree = SOURCE_ROOT; };
A7E9B6FB12D37EC400DA6239 /* getlistcountcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = getlistcountcommand.h; path = source/commands/getlistcountcommand.h; sourceTree = SOURCE_ROOT; };
A7E9B6FC12D37EC400DA6239 /* getopt_long.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = getopt_long.cpp; path = source/clearcut/getopt_long.cpp; sourceTree = SOURCE_ROOT; };
A7E9B6FD12D37EC400DA6239 /* getopt_long.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = getopt_long.h; path = source/clearcut/getopt_long.h; sourceTree = SOURCE_ROOT; };
A7E9B6FE12D37EC400DA6239 /* getoturepcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = getoturepcommand.cpp; path = source/commands/getoturepcommand.cpp; sourceTree = SOURCE_ROOT; };
A7E9B6FF12D37EC400DA6239 /* getoturepcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = getoturepcommand.h; path = source/commands/getoturepcommand.h; sourceTree = SOURCE_ROOT; };
A7E9B70212D37EC400DA6239 /* getrabundcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; lineEnding = 0; name = getrabundcommand.cpp; path = source/commands/getrabundcommand.cpp; sourceTree = SOURCE_ROOT; xcLanguageSpecificationIdentifier = xcode.lang.cpp; };
A7E9B70312D37EC400DA6239 /* getrabundcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = getrabundcommand.h; path = source/commands/getrabundcommand.h; sourceTree = SOURCE_ROOT; };
A7E9B70412D37EC400DA6239 /* getrelabundcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = getrelabundcommand.cpp; path = source/commands/getrelabundcommand.cpp; sourceTree = SOURCE_ROOT; };
A7E9B70512D37EC400DA6239 /* getrelabundcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = getrelabundcommand.h; path = source/commands/getrelabundcommand.h; sourceTree = SOURCE_ROOT; };
A7E9B70612D37EC400DA6239 /* getsabundcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; lineEnding = 0; name = getsabundcommand.cpp; path = source/commands/getsabundcommand.cpp; sourceTree = SOURCE_ROOT; xcLanguageSpecificationIdentifier = xcode.lang.cpp; };
A7E9B70712D37EC400DA6239 /* getsabundcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = getsabundcommand.h; path = source/commands/getsabundcommand.h; sourceTree = SOURCE_ROOT; };
A7E9B70812D37EC400DA6239 /* getseqscommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = getseqscommand.cpp; path = source/commands/getseqscommand.cpp; sourceTree = SOURCE_ROOT; };
A7E9B70912D37EC400DA6239 /* getseqscommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = getseqscommand.h; path = source/commands/getseqscommand.h; sourceTree = SOURCE_ROOT; };
A7E9B70A12D37EC400DA6239 /* getsharedotucommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = getsharedotucommand.cpp; path = source/commands/getsharedotucommand.cpp; sourceTree = SOURCE_ROOT; };
A7E9B70B12D37EC400DA6239 /* getsharedotucommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = getsharedotucommand.h; path = source/commands/getsharedotucommand.h; sourceTree = SOURCE_ROOT; };
A7E9B70E12D37EC400DA6239 /* goodscoverage.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = goodscoverage.cpp; path = source/calculators/goodscoverage.cpp; sourceTree = SOURCE_ROOT; };
A7E9B70F12D37EC400DA6239 /* goodscoverage.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = goodscoverage.h; path = source/calculators/goodscoverage.h; sourceTree = SOURCE_ROOT; };
A7E9B71012D37EC400DA6239 /* gotohoverlap.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = gotohoverlap.cpp; path = source/gotohoverlap.cpp; sourceTree = SOURCE_ROOT; };
A7E9B71112D37EC400DA6239 /* gotohoverlap.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; name = gotohoverlap.hpp; path = source/gotohoverlap.hpp; sourceTree = SOURCE_ROOT; };
A7E9B71212D37EC400DA6239 /* gower.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = gower.cpp; path = source/calculators/gower.cpp; sourceTree = SOURCE_ROOT; };
A7E9B71312D37EC400DA6239 /* gower.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = gower.h; path = source/calculators/gower.h; sourceTree = SOURCE_ROOT; };
A7E9B71412D37EC400DA6239 /* groupmap.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = groupmap.cpp; path = source/datastructures/groupmap.cpp; sourceTree = SOURCE_ROOT; };
A7E9B71512D37EC400DA6239 /* groupmap.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = groupmap.h; path = source/datastructures/groupmap.h; sourceTree = SOURCE_ROOT; };
A7E9B71612D37EC400DA6239 /* hamming.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = hamming.cpp; path = source/calculators/hamming.cpp; sourceTree = SOURCE_ROOT; };
A7E9B71712D37EC400DA6239 /* hamming.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = hamming.h; path = source/calculators/hamming.h; sourceTree = SOURCE_ROOT; };
A7E9B71C12D37EC400DA6239 /* heatmap.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = heatmap.cpp; path = source/heatmap.cpp; sourceTree = SOURCE_ROOT; };
A7E9B71D12D37EC400DA6239 /* heatmap.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = heatmap.h; path = source/heatmap.h; sourceTree = SOURCE_ROOT; };
A7E9B71E12D37EC400DA6239 /* heatmapcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = heatmapcommand.cpp; path = source/commands/heatmapcommand.cpp; sourceTree = SOURCE_ROOT; };
A7E9B71F12D37EC400DA6239 /* heatmapcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = heatmapcommand.h; path = source/commands/heatmapcommand.h; sourceTree = SOURCE_ROOT; };
A7E9B72012D37EC400DA6239 /* heatmapsim.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = heatmapsim.cpp; path = source/heatmapsim.cpp; sourceTree = SOURCE_ROOT; };
A7E9B72112D37EC400DA6239 /* heatmapsim.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = heatmapsim.h; path = source/heatmapsim.h; sourceTree = SOURCE_ROOT; };
A7E9B72212D37EC400DA6239 /* heatmapsimcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = heatmapsimcommand.cpp; path = source/commands/heatmapsimcommand.cpp; sourceTree = SOURCE_ROOT; };
A7E9B72312D37EC400DA6239 /* heatmapsimcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = heatmapsimcommand.h; path = source/commands/heatmapsimcommand.h; sourceTree = SOURCE_ROOT; };
A7E9B72412D37EC400DA6239 /* heip.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = heip.cpp; path = source/calculators/heip.cpp; sourceTree = SOURCE_ROOT; };
A7E9B72512D37EC400DA6239 /* heip.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = heip.h; path = source/calculators/heip.h; sourceTree = SOURCE_ROOT; };
A7E9B72612D37EC400DA6239 /* hellinger.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = hellinger.cpp; path = source/calculators/hellinger.cpp; sourceTree = SOURCE_ROOT; };
A7E9B72712D37EC400DA6239 /* hellinger.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = hellinger.h; path = source/calculators/hellinger.h; sourceTree = SOURCE_ROOT; };
A7E9B72812D37EC400DA6239 /* helpcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = helpcommand.cpp; path = source/commands/helpcommand.cpp; sourceTree = SOURCE_ROOT; };
A7E9B72912D37EC400DA6239 /* helpcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = helpcommand.h; path = source/commands/helpcommand.h; sourceTree = SOURCE_ROOT; };
A7E9B72A12D37EC400DA6239 /* ignoregaps.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = ignoregaps.h; path = source/calculators/ignoregaps.h; sourceTree = SOURCE_ROOT; };
A7E9B72B12D37EC400DA6239 /* indicatorcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = indicatorcommand.cpp; path = source/commands/indicatorcommand.cpp; sourceTree = SOURCE_ROOT; };
A7E9B72C12D37EC400DA6239 /* indicatorcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = indicatorcommand.h; path = source/commands/indicatorcommand.h; sourceTree = SOURCE_ROOT; };
A7E9B72D12D37EC400DA6239 /* inputdata.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = inputdata.cpp; path = source/inputdata.cpp; sourceTree = SOURCE_ROOT; };
A7E9B72E12D37EC400DA6239 /* inputdata.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = inputdata.h; path = source/inputdata.h; sourceTree = SOURCE_ROOT; };
A7E9B72F12D37EC400DA6239 /* invsimpson.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = invsimpson.cpp; path = source/calculators/invsimpson.cpp; sourceTree = SOURCE_ROOT; };
A7E9B73012D37EC400DA6239 /* invsimpson.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = invsimpson.h; path = source/calculators/invsimpson.h; sourceTree = SOURCE_ROOT; };
A7E9B73112D37EC400DA6239 /* jackknife.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = jackknife.cpp; path = source/calculators/jackknife.cpp; sourceTree = SOURCE_ROOT; };
A7E9B73212D37EC400DA6239 /* jackknife.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = jackknife.h; path = source/calculators/jackknife.h; sourceTree = SOURCE_ROOT; };
A7E9B73312D37EC400DA6239 /* kmer.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = kmer.cpp; path = source/datastructures/kmer.cpp; sourceTree = SOURCE_ROOT; };
A7E9B73412D37EC400DA6239 /* kmer.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; name = kmer.hpp; path = source/datastructures/kmer.hpp; sourceTree = SOURCE_ROOT; };
A7E9B73512D37EC400DA6239 /* kmerdb.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = kmerdb.cpp; path = source/datastructures/kmerdb.cpp; sourceTree = SOURCE_ROOT; };
A7E9B73612D37EC400DA6239 /* kmerdb.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; name = kmerdb.hpp; path = source/datastructures/kmerdb.hpp; sourceTree = SOURCE_ROOT; };
A7E9B73712D37EC400DA6239 /* knn.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = knn.cpp; path = source/classifier/knn.cpp; sourceTree = SOURCE_ROOT; };
A7E9B73812D37EC400DA6239 /* knn.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = knn.h; path = source/classifier/knn.h; sourceTree = SOURCE_ROOT; };
A7E9B73912D37EC400DA6239 /* libshuff.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = libshuff.cpp; path = source/libshuff.cpp; sourceTree = SOURCE_ROOT; };
A7E9B73A12D37EC400DA6239 /* libshuff.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = libshuff.h; path = source/libshuff.h; sourceTree = SOURCE_ROOT; };
A7E9B73B12D37EC400DA6239 /* libshuffcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = libshuffcommand.cpp; path = source/commands/libshuffcommand.cpp; sourceTree = SOURCE_ROOT; };
A7E9B73C12D37EC400DA6239 /* libshuffcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = libshuffcommand.h; path = source/commands/libshuffcommand.h; sourceTree = SOURCE_ROOT; };
A7E9B73D12D37EC400DA6239 /* listseqscommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; lineEnding = 0; name = listseqscommand.cpp; path = source/commands/listseqscommand.cpp; sourceTree = SOURCE_ROOT; xcLanguageSpecificationIdentifier = xcode.lang.cpp; };
A7E9B73E12D37EC400DA6239 /* listseqscommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = listseqscommand.h; path = source/commands/listseqscommand.h; sourceTree = SOURCE_ROOT; };
A7E9B73F12D37EC400DA6239 /* listvector.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = listvector.cpp; path = source/datastructures/listvector.cpp; sourceTree = SOURCE_ROOT; };
A7E9B74012D37EC400DA6239 /* listvector.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; name = listvector.hpp; path = source/datastructures/listvector.hpp; sourceTree = SOURCE_ROOT; };
A7E9B74112D37EC400DA6239 /* logsd.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = logsd.cpp; path = source/calculators/logsd.cpp; sourceTree = SOURCE_ROOT; };
A7E9B74212D37EC400DA6239 /* logsd.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = logsd.h; path = source/calculators/logsd.h; sourceTree = SOURCE_ROOT; };
A7E9B74312D37EC400DA6239 /* makegroupcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; lineEnding = 0; name = makegroupcommand.cpp; path = source/commands/makegroupcommand.cpp; sourceTree = SOURCE_ROOT; xcLanguageSpecificationIdentifier = xcode.lang.cpp; };
A7E9B74412D37EC400DA6239 /* makegroupcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = makegroupcommand.h; path = source/commands/makegroupcommand.h; sourceTree = SOURCE_ROOT; };
A7E9B74512D37EC400DA6239 /* maligner.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = maligner.cpp; path = source/chimera/maligner.cpp; sourceTree = SOURCE_ROOT; };
A7E9B74612D37EC400DA6239 /* maligner.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = maligner.h; path = source/chimera/maligner.h; sourceTree = SOURCE_ROOT; };
A7E9B74712D37EC400DA6239 /* manhattan.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = manhattan.cpp; path = source/calculators/manhattan.cpp; sourceTree = SOURCE_ROOT; };
A7E9B74812D37EC400DA6239 /* manhattan.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = manhattan.h; path = source/calculators/manhattan.h; sourceTree = SOURCE_ROOT; };
A7E9B74912D37EC400DA6239 /* distsharedcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = distsharedcommand.cpp; path = source/commands/distsharedcommand.cpp; sourceTree = SOURCE_ROOT; };
A7E9B74A12D37EC400DA6239 /* distsharedcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = distsharedcommand.h; path = source/commands/distsharedcommand.h; sourceTree = SOURCE_ROOT; };
A7E9B74B12D37EC400DA6239 /* memchi2.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = memchi2.cpp; path = source/calculators/memchi2.cpp; sourceTree = SOURCE_ROOT; };
A7E9B74C12D37EC400DA6239 /* memchi2.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = memchi2.h; path = source/calculators/memchi2.h; sourceTree = SOURCE_ROOT; };
A7E9B74D12D37EC400DA6239 /* memchord.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = memchord.cpp; path = source/calculators/memchord.cpp; sourceTree = SOURCE_ROOT; };
A7E9B74E12D37EC400DA6239 /* memchord.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = memchord.h; path = source/calculators/memchord.h; sourceTree = SOURCE_ROOT; };
A7E9B74F12D37EC400DA6239 /* memeuclidean.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = memeuclidean.cpp; path = source/calculators/memeuclidean.cpp; sourceTree = SOURCE_ROOT; };
A7E9B75012D37EC400DA6239 /* memeuclidean.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = memeuclidean.h; path = source/calculators/memeuclidean.h; sourceTree = SOURCE_ROOT; };
A7E9B75112D37EC400DA6239 /* mempearson.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = mempearson.cpp; path = source/calculators/mempearson.cpp; sourceTree = SOURCE_ROOT; };
A7E9B75212D37EC400DA6239 /* mempearson.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = mempearson.h; path = source/calculators/mempearson.h; sourceTree = SOURCE_ROOT; };
A7E9B75312D37EC400DA6239 /* mergefilecommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = mergefilecommand.cpp; path = source/commands/mergefilecommand.cpp; sourceTree = SOURCE_ROOT; };
A7E9B75412D37EC400DA6239 /* mergefilecommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = mergefilecommand.h; path = source/commands/mergefilecommand.h; sourceTree = SOURCE_ROOT; };
A7E9B75712D37EC400DA6239 /* metastatscommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = metastatscommand.cpp; path = source/commands/metastatscommand.cpp; sourceTree = SOURCE_ROOT; };
A7E9B75812D37EC400DA6239 /* metastatscommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = metastatscommand.h; path = source/commands/metastatscommand.h; sourceTree = SOURCE_ROOT; };
A7E9B75912D37EC400DA6239 /* mgclustercommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = mgclustercommand.cpp; path = source/commands/mgclustercommand.cpp; sourceTree = SOURCE_ROOT; };
A7E9B75A12D37EC400DA6239 /* mgclustercommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = mgclustercommand.h; path = source/commands/mgclustercommand.h; sourceTree = SOURCE_ROOT; };
A7E9B75B12D37EC400DA6239 /* mothur.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = mothur.cpp; path = source/mothur.cpp; sourceTree = SOURCE_ROOT; };
A7E9B75C12D37EC400DA6239 /* mothur.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = mothur.h; path = source/mothur.h; sourceTree = SOURCE_ROOT; };
A7E9B75D12D37EC400DA6239 /* mothurout.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = mothurout.cpp; path = source/mothurout.cpp; sourceTree = SOURCE_ROOT; };
A7E9B75E12D37EC400DA6239 /* mothurout.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = mothurout.h; path = source/mothurout.h; sourceTree = SOURCE_ROOT; };
A7E9B75F12D37EC400DA6239 /* nameassignment.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = nameassignment.cpp; path = source/datastructures/nameassignment.cpp; sourceTree = SOURCE_ROOT; };
A7E9B76012D37EC400DA6239 /* nameassignment.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; name = nameassignment.hpp; path = source/datastructures/nameassignment.hpp; sourceTree = SOURCE_ROOT; };
A7E9B76112D37EC400DA6239 /* nast.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = nast.cpp; path = source/nast.cpp; sourceTree = "<group>"; };
A7E9B76212D37EC400DA6239 /* nast.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; name = nast.hpp; path = source/nast.hpp; sourceTree = "<group>"; };
A7E9B76312D37EC400DA6239 /* alignreport.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = alignreport.cpp; path = source/alignreport.cpp; sourceTree = SOURCE_ROOT; };
A7E9B76412D37EC400DA6239 /* alignreport.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; name = alignreport.hpp; path = source/alignreport.hpp; sourceTree = SOURCE_ROOT; };
A7E9B76512D37EC400DA6239 /* needlemanoverlap.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = needlemanoverlap.cpp; path = source/needlemanoverlap.cpp; sourceTree = SOURCE_ROOT; };
A7E9B76612D37EC400DA6239 /* needlemanoverlap.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; name = needlemanoverlap.hpp; path = source/needlemanoverlap.hpp; sourceTree = SOURCE_ROOT; };
A7E9B76712D37EC400DA6239 /* noalign.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = noalign.cpp; path = source/noalign.cpp; sourceTree = SOURCE_ROOT; };
A7E9B76812D37EC400DA6239 /* noalign.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; name = noalign.hpp; path = source/noalign.hpp; sourceTree = SOURCE_ROOT; };
A7E9B76912D37EC400DA6239 /* nocommands.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = nocommands.cpp; path = source/commands/nocommands.cpp; sourceTree = SOURCE_ROOT; };
A7E9B76A12D37EC400DA6239 /* nocommands.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = nocommands.h; path = source/commands/nocommands.h; sourceTree = SOURCE_ROOT; };
A7E9B76B12D37EC400DA6239 /* normalizesharedcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = normalizesharedcommand.cpp; path = source/commands/normalizesharedcommand.cpp; sourceTree = SOURCE_ROOT; };
A7E9B76C12D37EC400DA6239 /* normalizesharedcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = normalizesharedcommand.h; path = source/commands/normalizesharedcommand.h; sourceTree = SOURCE_ROOT; };
A7E9B76D12D37EC400DA6239 /* npshannon.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = npshannon.cpp; path = source/calculators/npshannon.cpp; sourceTree = SOURCE_ROOT; };
A7E9B76E12D37EC400DA6239 /* npshannon.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = npshannon.h; path = source/calculators/npshannon.h; sourceTree = SOURCE_ROOT; };
A7E9B76F12D37EC400DA6239 /* nseqs.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = nseqs.h; path = source/calculators/nseqs.h; sourceTree = SOURCE_ROOT; };
A7E9B77012D37EC400DA6239 /* observable.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = observable.h; path = source/observable.h; sourceTree = SOURCE_ROOT; };
A7E9B77112D37EC400DA6239 /* odum.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = odum.cpp; path = source/calculators/odum.cpp; sourceTree = SOURCE_ROOT; };
A7E9B77212D37EC400DA6239 /* odum.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = odum.h; path = source/calculators/odum.h; sourceTree = SOURCE_ROOT; };
A7E9B77312D37EC400DA6239 /* onegapdist.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = onegapdist.h; path = source/calculators/onegapdist.h; sourceTree = SOURCE_ROOT; };
A7E9B77412D37EC400DA6239 /* onegapignore.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = onegapignore.h; path = source/calculators/onegapignore.h; sourceTree = SOURCE_ROOT; };
A7E9B77512D37EC400DA6239 /* optionparser.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = optionparser.cpp; path = source/optionparser.cpp; sourceTree = SOURCE_ROOT; };
A7E9B77612D37EC400DA6239 /* optionparser.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = optionparser.h; path = source/optionparser.h; sourceTree = SOURCE_ROOT; };
A7E9B77712D37EC400DA6239 /* ordervector.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = ordervector.cpp; path = source/datastructures/ordervector.cpp; sourceTree = SOURCE_ROOT; };
A7E9B77812D37EC400DA6239 /* ordervector.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; name = ordervector.hpp; path = source/datastructures/ordervector.hpp; sourceTree = SOURCE_ROOT; };
A7E9B77912D37EC400DA6239 /* otuhierarchycommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = otuhierarchycommand.cpp; path = source/commands/otuhierarchycommand.cpp; sourceTree = SOURCE_ROOT; };
A7E9B77A12D37EC400DA6239 /* otuhierarchycommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = otuhierarchycommand.h; path = source/commands/otuhierarchycommand.h; sourceTree = SOURCE_ROOT; };
A7E9B77B12D37EC400DA6239 /* overlap.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = overlap.cpp; path = source/overlap.cpp; sourceTree = SOURCE_ROOT; };
A7E9B77C12D37EC400DA6239 /* overlap.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; name = overlap.hpp; path = source/overlap.hpp; sourceTree = SOURCE_ROOT; };
A7E9B77D12D37EC400DA6239 /* pairwiseseqscommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = pairwiseseqscommand.cpp; path = source/commands/pairwiseseqscommand.cpp; sourceTree = SOURCE_ROOT; };
A7E9B77E12D37EC400DA6239 /* pairwiseseqscommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = pairwiseseqscommand.h; path = source/commands/pairwiseseqscommand.h; sourceTree = SOURCE_ROOT; };
A7E9B77F12D37EC400DA6239 /* fastaqinfocommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = fastaqinfocommand.cpp; path = source/commands/fastaqinfocommand.cpp; sourceTree = SOURCE_ROOT; };
A7E9B78012D37EC400DA6239 /* fastaqinfocommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = fastaqinfocommand.h; path = source/commands/fastaqinfocommand.h; sourceTree = SOURCE_ROOT; };
A7E9B78312D37EC400DA6239 /* parsimony.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = parsimony.cpp; path = source/calculators/parsimony.cpp; sourceTree = SOURCE_ROOT; };
A7E9B78412D37EC400DA6239 /* parsimony.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = parsimony.h; path = source/calculators/parsimony.h; sourceTree = SOURCE_ROOT; };
A7E9B78512D37EC400DA6239 /* parsimonycommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = parsimonycommand.cpp; path = source/commands/parsimonycommand.cpp; sourceTree = SOURCE_ROOT; };
A7E9B78612D37EC400DA6239 /* parsimonycommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = parsimonycommand.h; path = source/commands/parsimonycommand.h; sourceTree = SOURCE_ROOT; };
A7E9B78712D37EC400DA6239 /* pcoacommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = pcoacommand.cpp; path = source/commands/pcoacommand.cpp; sourceTree = SOURCE_ROOT; };
A7E9B78812D37EC400DA6239 /* pcoacommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = pcoacommand.h; path = source/commands/pcoacommand.h; sourceTree = SOURCE_ROOT; };
A7E9B78B12D37EC400DA6239 /* phylodiversitycommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = phylodiversitycommand.cpp; path = source/commands/phylodiversitycommand.cpp; sourceTree = SOURCE_ROOT; };
A7E9B78C12D37EC400DA6239 /* phylodiversitycommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = phylodiversitycommand.h; path = source/commands/phylodiversitycommand.h; sourceTree = SOURCE_ROOT; };
A7E9B78D12D37EC400DA6239 /* phylosummary.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = phylosummary.cpp; path = source/classifier/phylosummary.cpp; sourceTree = SOURCE_ROOT; };
A7E9B78E12D37EC400DA6239 /* phylosummary.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = phylosummary.h; path = source/classifier/phylosummary.h; sourceTree = SOURCE_ROOT; };
A7E9B78F12D37EC400DA6239 /* phylotree.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = phylotree.cpp; path = source/classifier/phylotree.cpp; sourceTree = SOURCE_ROOT; };
A7E9B79012D37EC400DA6239 /* phylotree.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = phylotree.h; path = source/classifier/phylotree.h; sourceTree = SOURCE_ROOT; };
A7E9B79112D37EC400DA6239 /* phylotypecommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = phylotypecommand.cpp; path = source/commands/phylotypecommand.cpp; sourceTree = SOURCE_ROOT; };
A7E9B79212D37EC400DA6239 /* phylotypecommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = phylotypecommand.h; path = source/commands/phylotypecommand.h; sourceTree = SOURCE_ROOT; };
A7E9B79312D37EC400DA6239 /* pintail.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = pintail.cpp; path = source/chimera/pintail.cpp; sourceTree = SOURCE_ROOT; };
A7E9B79412D37EC400DA6239 /* pintail.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = pintail.h; path = source/chimera/pintail.h; sourceTree = SOURCE_ROOT; };
A7E9B79712D37EC400DA6239 /* preclustercommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = preclustercommand.cpp; path = source/commands/preclustercommand.cpp; sourceTree = SOURCE_ROOT; };
A7E9B79812D37EC400DA6239 /* preclustercommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = preclustercommand.h; path = source/commands/preclustercommand.h; sourceTree = SOURCE_ROOT; };
A7E9B79912D37EC400DA6239 /* prng.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = prng.cpp; path = source/calculators/prng.cpp; sourceTree = SOURCE_ROOT; };
A7E9B79A12D37EC400DA6239 /* prng.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = prng.h; path = source/calculators/prng.h; sourceTree = SOURCE_ROOT; };
A7E9B79D12D37EC400DA6239 /* qstat.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = qstat.cpp; path = source/calculators/qstat.cpp; sourceTree = SOURCE_ROOT; };
A7E9B79E12D37EC400DA6239 /* qstat.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = qstat.h; path = source/calculators/qstat.h; sourceTree = SOURCE_ROOT; };
A7E9B79F12D37EC400DA6239 /* qualityscores.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = qualityscores.cpp; path = source/datastructures/qualityscores.cpp; sourceTree = SOURCE_ROOT; };
A7E9B7A012D37EC400DA6239 /* qualityscores.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = qualityscores.h; path = source/datastructures/qualityscores.h; sourceTree = SOURCE_ROOT; };
A7E9B7A112D37EC400DA6239 /* quitcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = quitcommand.cpp; path = source/commands/quitcommand.cpp; sourceTree = SOURCE_ROOT; };
A7E9B7A212D37EC400DA6239 /* quitcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = quitcommand.h; path = source/commands/quitcommand.h; sourceTree = SOURCE_ROOT; };
A7E9B7A312D37EC400DA6239 /* rabundvector.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = rabundvector.cpp; path = source/datastructures/rabundvector.cpp; sourceTree = SOURCE_ROOT; };
A7E9B7A412D37EC400DA6239 /* rabundvector.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; name = rabundvector.hpp; path = source/datastructures/rabundvector.hpp; sourceTree = SOURCE_ROOT; };
A7E9B7A712D37EC400DA6239 /* raredisplay.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = raredisplay.cpp; path = source/raredisplay.cpp; sourceTree = SOURCE_ROOT; };
A7E9B7A812D37EC400DA6239 /* raredisplay.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = raredisplay.h; path = source/raredisplay.h; sourceTree = SOURCE_ROOT; };
A7E9B7A912D37EC400DA6239 /* rarefact.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = rarefact.cpp; path = source/rarefact.cpp; sourceTree = SOURCE_ROOT; };
A7E9B7AA12D37EC400DA6239 /* rarefact.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = rarefact.h; path = source/rarefact.h; sourceTree = SOURCE_ROOT; };
A7E9B7AB12D37EC400DA6239 /* rarefactcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = rarefactcommand.cpp; path = source/commands/rarefactcommand.cpp; sourceTree = SOURCE_ROOT; };
A7E9B7AC12D37EC400DA6239 /* rarefactcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = rarefactcommand.h; path = source/commands/rarefactcommand.h; sourceTree = SOURCE_ROOT; };
A7E9B7AD12D37EC400DA6239 /* rarefactioncurvedata.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = rarefactioncurvedata.h; path = source/rarefactioncurvedata.h; sourceTree = SOURCE_ROOT; };
A7E9B7AE12D37EC400DA6239 /* rarefactsharedcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = rarefactsharedcommand.cpp; path = source/commands/rarefactsharedcommand.cpp; sourceTree = SOURCE_ROOT; };
A7E9B7AF12D37EC400DA6239 /* rarefactsharedcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = rarefactsharedcommand.h; path = source/commands/rarefactsharedcommand.h; sourceTree = SOURCE_ROOT; };
A7E9B7B012D37EC400DA6239 /* readblast.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = readblast.cpp; path = source/read/readblast.cpp; sourceTree = SOURCE_ROOT; };
A7E9B7B112D37EC400DA6239 /* readblast.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = readblast.h; path = source/read/readblast.h; sourceTree = SOURCE_ROOT; };
A7E9B7B212D37EC400DA6239 /* readcluster.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = readcluster.cpp; path = source/read/readcluster.cpp; sourceTree = SOURCE_ROOT; };
A7E9B7B312D37EC400DA6239 /* readcluster.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = readcluster.h; path = source/read/readcluster.h; sourceTree = SOURCE_ROOT; };
A7E9B7B412D37EC400DA6239 /* readcolumn.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = readcolumn.cpp; path = source/read/readcolumn.cpp; sourceTree = SOURCE_ROOT; };
A7E9B7B512D37EC400DA6239 /* readcolumn.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = readcolumn.h; path = source/read/readcolumn.h; sourceTree = SOURCE_ROOT; };
A7E9B7B812D37EC400DA6239 /* readmatrix.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; name = readmatrix.hpp; path = source/read/readmatrix.hpp; sourceTree = SOURCE_ROOT; };
A7E9B7BD12D37EC400DA6239 /* readphylip.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = readphylip.cpp; path = source/read/readphylip.cpp; sourceTree = SOURCE_ROOT; };
A7E9B7BE12D37EC400DA6239 /* readphylip.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = readphylip.h; path = source/read/readphylip.h; sourceTree = SOURCE_ROOT; };
A7E9B7BF12D37EC400DA6239 /* readtree.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = readtree.cpp; path = source/read/readtree.cpp; sourceTree = SOURCE_ROOT; };
A7E9B7C012D37EC400DA6239 /* readtree.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = readtree.h; path = source/read/readtree.h; sourceTree = SOURCE_ROOT; };
A7E9B7C312D37EC400DA6239 /* removegroupscommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = removegroupscommand.cpp; path = source/commands/removegroupscommand.cpp; sourceTree = SOURCE_ROOT; };
A7E9B7C412D37EC400DA6239 /* removegroupscommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = removegroupscommand.h; path = source/commands/removegroupscommand.h; sourceTree = SOURCE_ROOT; };
A7E9B7C512D37EC400DA6239 /* removelineagecommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = removelineagecommand.cpp; path = source/commands/removelineagecommand.cpp; sourceTree = SOURCE_ROOT; };
A7E9B7C612D37EC400DA6239 /* removelineagecommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = removelineagecommand.h; path = source/commands/removelineagecommand.h; sourceTree = SOURCE_ROOT; };
A7E9B7C912D37EC400DA6239 /* removeseqscommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = removeseqscommand.cpp; path = source/commands/removeseqscommand.cpp; sourceTree = SOURCE_ROOT; };
A7E9B7CA12D37EC400DA6239 /* removeseqscommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = removeseqscommand.h; path = source/commands/removeseqscommand.h; sourceTree = SOURCE_ROOT; };
A7E9B7CD12D37EC400DA6239 /* reversecommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = reversecommand.cpp; path = source/commands/reversecommand.cpp; sourceTree = SOURCE_ROOT; };
A7E9B7CE12D37EC400DA6239 /* reversecommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = reversecommand.h; path = source/commands/reversecommand.h; sourceTree = SOURCE_ROOT; };
A7E9B7CF12D37EC400DA6239 /* sabundvector.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = sabundvector.cpp; path = source/datastructures/sabundvector.cpp; sourceTree = SOURCE_ROOT; };
A7E9B7D012D37EC400DA6239 /* sabundvector.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; name = sabundvector.hpp; path = source/datastructures/sabundvector.hpp; sourceTree = SOURCE_ROOT; };
A7E9B7D112D37EC400DA6239 /* screenseqscommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = screenseqscommand.cpp; path = source/commands/screenseqscommand.cpp; sourceTree = SOURCE_ROOT; };
A7E9B7D212D37EC400DA6239 /* screenseqscommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = screenseqscommand.h; path = source/commands/screenseqscommand.h; sourceTree = SOURCE_ROOT; };
A7E9B7D312D37EC400DA6239 /* aligncheckcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = aligncheckcommand.cpp; path = source/commands/aligncheckcommand.cpp; sourceTree = SOURCE_ROOT; };
A7E9B7D412D37EC400DA6239 /* aligncheckcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = aligncheckcommand.h; path = source/commands/aligncheckcommand.h; sourceTree = SOURCE_ROOT; };
A7E9B7D512D37EC400DA6239 /* sensspeccommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = sensspeccommand.cpp; path = source/commands/sensspeccommand.cpp; sourceTree = SOURCE_ROOT; };
A7E9B7D612D37EC400DA6239 /* sensspeccommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = sensspeccommand.h; path = source/commands/sensspeccommand.h; sourceTree = SOURCE_ROOT; };
A7E9B7D712D37EC400DA6239 /* seqerrorcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = seqerrorcommand.cpp; path = source/commands/seqerrorcommand.cpp; sourceTree = SOURCE_ROOT; };
A7E9B7D812D37EC400DA6239 /* seqerrorcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = seqerrorcommand.h; path = source/commands/seqerrorcommand.h; sourceTree = SOURCE_ROOT; };
A7E9B7D912D37EC400DA6239 /* seqsummarycommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = seqsummarycommand.cpp; path = source/commands/seqsummarycommand.cpp; sourceTree = SOURCE_ROOT; };
A7E9B7DA12D37EC400DA6239 /* seqsummarycommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = seqsummarycommand.h; path = source/commands/seqsummarycommand.h; sourceTree = SOURCE_ROOT; };
A7E9B7DB12D37EC400DA6239 /* sequence.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = sequence.cpp; path = source/datastructures/sequence.cpp; sourceTree = SOURCE_ROOT; };
A7E9B7DC12D37EC400DA6239 /* sequence.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; name = sequence.hpp; path = source/datastructures/sequence.hpp; sourceTree = SOURCE_ROOT; };
A7E9B7DD12D37EC400DA6239 /* sequencedb.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = sequencedb.cpp; path = source/datastructures/sequencedb.cpp; sourceTree = SOURCE_ROOT; };
A7E9B7DE12D37EC400DA6239 /* sequencedb.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = sequencedb.h; path = source/datastructures/sequencedb.h; sourceTree = SOURCE_ROOT; };
A7E9B7DF12D37EC400DA6239 /* setdircommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = setdircommand.cpp; path = source/commands/setdircommand.cpp; sourceTree = SOURCE_ROOT; };
A7E9B7E012D37EC400DA6239 /* setdircommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = setdircommand.h; path = source/commands/setdircommand.h; sourceTree = SOURCE_ROOT; };
A7E9B7E112D37EC400DA6239 /* setlogfilecommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = setlogfilecommand.cpp; path = source/commands/setlogfilecommand.cpp; sourceTree = SOURCE_ROOT; };
A7E9B7E212D37EC400DA6239 /* setlogfilecommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = setlogfilecommand.h; path = source/commands/setlogfilecommand.h; sourceTree = SOURCE_ROOT; };
A7E9B7E312D37EC400DA6239 /* sffinfocommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = sffinfocommand.cpp; path = source/commands/sffinfocommand.cpp; sourceTree = SOURCE_ROOT; };
A7E9B7E412D37EC400DA6239 /* sffinfocommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = sffinfocommand.h; path = source/commands/sffinfocommand.h; sourceTree = SOURCE_ROOT; };
A7E9B7E512D37EC400DA6239 /* shannon.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = shannon.cpp; path = source/calculators/shannon.cpp; sourceTree = SOURCE_ROOT; };
A7E9B7E612D37EC400DA6239 /* shannon.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = shannon.h; path = source/calculators/shannon.h; sourceTree = SOURCE_ROOT; };
A7E9B7E712D37EC400DA6239 /* shannoneven.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = shannoneven.cpp; path = source/calculators/shannoneven.cpp; sourceTree = SOURCE_ROOT; };
A7E9B7E812D37EC400DA6239 /* shannoneven.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = shannoneven.h; path = source/calculators/shannoneven.h; sourceTree = SOURCE_ROOT; };
A7E9B7E912D37EC400DA6239 /* sharedace.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = sharedace.cpp; path = source/calculators/sharedace.cpp; sourceTree = SOURCE_ROOT; };
A7E9B7EA12D37EC400DA6239 /* sharedace.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = sharedace.h; path = source/calculators/sharedace.h; sourceTree = SOURCE_ROOT; };
A7E9B7EC12D37EC400DA6239 /* sharedanderbergs.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = sharedanderbergs.cpp; path = source/calculators/sharedanderbergs.cpp; sourceTree = SOURCE_ROOT; };
A7E9B7ED12D37EC400DA6239 /* sharedanderbergs.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = sharedanderbergs.h; path = source/calculators/sharedanderbergs.h; sourceTree = SOURCE_ROOT; };
A7E9B7EE12D37EC400DA6239 /* sharedbraycurtis.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = sharedbraycurtis.cpp; path = source/calculators/sharedbraycurtis.cpp; sourceTree = SOURCE_ROOT; };
A7E9B7EF12D37EC400DA6239 /* sharedbraycurtis.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = sharedbraycurtis.h; path = source/calculators/sharedbraycurtis.h; sourceTree = SOURCE_ROOT; };
A7E9B7F012D37EC400DA6239 /* sharedchao1.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = sharedchao1.cpp; path = source/calculators/sharedchao1.cpp; sourceTree = SOURCE_ROOT; };
A7E9B7F112D37EC400DA6239 /* sharedchao1.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = sharedchao1.h; path = source/calculators/sharedchao1.h; sourceTree = SOURCE_ROOT; };
A7E9B7F212D37EC400DA6239 /* makesharedcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = makesharedcommand.cpp; path = source/commands/makesharedcommand.cpp; sourceTree = SOURCE_ROOT; };
A7E9B7F312D37EC400DA6239 /* makesharedcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = makesharedcommand.h; path = source/commands/makesharedcommand.h; sourceTree = SOURCE_ROOT; };
A7E9B7F412D37EC400DA6239 /* sharedjabund.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = sharedjabund.cpp; path = source/calculators/sharedjabund.cpp; sourceTree = SOURCE_ROOT; };
A7E9B7F512D37EC400DA6239 /* sharedjabund.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = sharedjabund.h; path = source/calculators/sharedjabund.h; sourceTree = SOURCE_ROOT; };
A7E9B7F612D37EC400DA6239 /* sharedjackknife.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = sharedjackknife.cpp; path = source/calculators/sharedjackknife.cpp; sourceTree = SOURCE_ROOT; };
A7E9B7F712D37EC400DA6239 /* sharedjackknife.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = sharedjackknife.h; path = source/calculators/sharedjackknife.h; sourceTree = SOURCE_ROOT; };
A7E9B7F812D37EC400DA6239 /* sharedjclass.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = sharedjclass.cpp; path = source/calculators/sharedjclass.cpp; sourceTree = SOURCE_ROOT; };
A7E9B7F912D37EC400DA6239 /* sharedjclass.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = sharedjclass.h; path = source/calculators/sharedjclass.h; sourceTree = SOURCE_ROOT; };
A7E9B7FA12D37EC400DA6239 /* sharedjest.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = sharedjest.cpp; path = source/calculators/sharedjest.cpp; sourceTree = SOURCE_ROOT; };
A7E9B7FB12D37EC400DA6239 /* sharedjest.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = sharedjest.h; path = source/calculators/sharedjest.h; sourceTree = SOURCE_ROOT; };
A7E9B7FC12D37EC400DA6239 /* sharedkstest.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = sharedkstest.cpp; path = source/calculators/sharedkstest.cpp; sourceTree = SOURCE_ROOT; };
A7E9B7FD12D37EC400DA6239 /* sharedkstest.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = sharedkstest.h; path = source/calculators/sharedkstest.h; sourceTree = SOURCE_ROOT; };
A7E9B7FE12D37EC400DA6239 /* sharedkulczynski.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = sharedkulczynski.cpp; path = source/calculators/sharedkulczynski.cpp; sourceTree = SOURCE_ROOT; };
A7E9B7FF12D37EC400DA6239 /* sharedkulczynski.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = sharedkulczynski.h; path = source/calculators/sharedkulczynski.h; sourceTree = SOURCE_ROOT; };
A7E9B80012D37EC400DA6239 /* sharedkulczynskicody.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = sharedkulczynskicody.cpp; path = source/calculators/sharedkulczynskicody.cpp; sourceTree = SOURCE_ROOT; };
A7E9B80112D37EC400DA6239 /* sharedkulczynskicody.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = sharedkulczynskicody.h; path = source/calculators/sharedkulczynskicody.h; sourceTree = SOURCE_ROOT; };
A7E9B80212D37EC400DA6239 /* sharedlennon.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = sharedlennon.cpp; path = source/calculators/sharedlennon.cpp; sourceTree = SOURCE_ROOT; };
A7E9B80312D37EC400DA6239 /* sharedlennon.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = sharedlennon.h; path = source/calculators/sharedlennon.h; sourceTree = SOURCE_ROOT; };
A7E9B80412D37EC400DA6239 /* sharedlistvector.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = sharedlistvector.cpp; path = source/datastructures/sharedlistvector.cpp; sourceTree = SOURCE_ROOT; };
A7E9B80512D37EC400DA6239 /* sharedlistvector.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = sharedlistvector.h; path = source/datastructures/sharedlistvector.h; sourceTree = SOURCE_ROOT; };
A7E9B80612D37EC400DA6239 /* sharedmarczewski.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = sharedmarczewski.cpp; path = source/calculators/sharedmarczewski.cpp; sourceTree = SOURCE_ROOT; };
A7E9B80712D37EC400DA6239 /* sharedmarczewski.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = sharedmarczewski.h; path = source/calculators/sharedmarczewski.h; sourceTree = SOURCE_ROOT; };
A7E9B80812D37EC400DA6239 /* sharedmorisitahorn.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = sharedmorisitahorn.cpp; path = source/calculators/sharedmorisitahorn.cpp; sourceTree = SOURCE_ROOT; };
A7E9B80912D37EC400DA6239 /* sharedmorisitahorn.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = sharedmorisitahorn.h; path = source/calculators/sharedmorisitahorn.h; sourceTree = SOURCE_ROOT; };
A7E9B80A12D37EC400DA6239 /* sharednseqs.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = sharednseqs.h; path = source/calculators/sharednseqs.h; sourceTree = SOURCE_ROOT; };
A7E9B80B12D37EC400DA6239 /* sharedochiai.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = sharedochiai.cpp; path = source/calculators/sharedochiai.cpp; sourceTree = SOURCE_ROOT; };
A7E9B80C12D37EC400DA6239 /* sharedochiai.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = sharedochiai.h; path = source/calculators/sharedochiai.h; sourceTree = SOURCE_ROOT; };
A7E9B80D12D37EC400DA6239 /* sharedordervector.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = sharedordervector.cpp; path = source/datastructures/sharedordervector.cpp; sourceTree = SOURCE_ROOT; };
A7E9B80E12D37EC400DA6239 /* sharedordervector.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = sharedordervector.h; path = source/datastructures/sharedordervector.h; sourceTree = SOURCE_ROOT; };
A7E9B81512D37EC400DA6239 /* sharedsobs.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = sharedsobs.cpp; path = source/calculators/sharedsobs.cpp; sourceTree = SOURCE_ROOT; };
A7E9B81612D37EC400DA6239 /* sharedsobs.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = sharedsobs.h; path = source/calculators/sharedsobs.h; sourceTree = SOURCE_ROOT; };
A7E9B81712D37EC400DA6239 /* sharedsobscollectsummary.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = sharedsobscollectsummary.cpp; path = source/calculators/sharedsobscollectsummary.cpp; sourceTree = SOURCE_ROOT; };
A7E9B81812D37EC400DA6239 /* sharedsobscollectsummary.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = sharedsobscollectsummary.h; path = source/calculators/sharedsobscollectsummary.h; sourceTree = SOURCE_ROOT; };
A7E9B81912D37EC400DA6239 /* sharedsorabund.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = sharedsorabund.cpp; path = source/calculators/sharedsorabund.cpp; sourceTree = SOURCE_ROOT; };
A7E9B81A12D37EC400DA6239 /* sharedsorabund.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = sharedsorabund.h; path = source/calculators/sharedsorabund.h; sourceTree = SOURCE_ROOT; };
A7E9B81B12D37EC400DA6239 /* sharedsorclass.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = sharedsorclass.cpp; path = source/calculators/sharedsorclass.cpp; sourceTree = SOURCE_ROOT; };
A7E9B81C12D37EC400DA6239 /* sharedsorclass.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = sharedsorclass.h; path = source/calculators/sharedsorclass.h; sourceTree = SOURCE_ROOT; };
A7E9B81D12D37EC400DA6239 /* sharedsorest.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = sharedsorest.cpp; path = source/calculators/sharedsorest.cpp; sourceTree = SOURCE_ROOT; };
A7E9B81E12D37EC400DA6239 /* sharedsorest.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = sharedsorest.h; path = source/calculators/sharedsorest.h; sourceTree = SOURCE_ROOT; };
A7E9B81F12D37EC400DA6239 /* sharedthetan.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = sharedthetan.cpp; path = source/calculators/sharedthetan.cpp; sourceTree = SOURCE_ROOT; };
A7E9B82012D37EC400DA6239 /* sharedthetan.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = sharedthetan.h; path = source/calculators/sharedthetan.h; sourceTree = SOURCE_ROOT; };
A7E9B82112D37EC400DA6239 /* sharedthetayc.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = sharedthetayc.cpp; path = source/calculators/sharedthetayc.cpp; sourceTree = SOURCE_ROOT; };
A7E9B82212D37EC400DA6239 /* sharedthetayc.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = sharedthetayc.h; path = source/calculators/sharedthetayc.h; sourceTree = SOURCE_ROOT; };
A7E9B82512D37EC400DA6239 /* shen.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = shen.cpp; path = source/calculators/shen.cpp; sourceTree = SOURCE_ROOT; };
A7E9B82612D37EC400DA6239 /* shen.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = shen.h; path = source/calculators/shen.h; sourceTree = SOURCE_ROOT; };
A7E9B82712D37EC400DA6239 /* shhhercommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = shhhercommand.cpp; path = source/commands/shhhercommand.cpp; sourceTree = SOURCE_ROOT; };
A7E9B82812D37EC400DA6239 /* shhhercommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = shhhercommand.h; path = source/commands/shhhercommand.h; sourceTree = SOURCE_ROOT; };
A7E9B82912D37EC400DA6239 /* simpson.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = simpson.cpp; path = source/calculators/simpson.cpp; sourceTree = SOURCE_ROOT; };
A7E9B82A12D37EC400DA6239 /* simpson.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = simpson.h; path = source/calculators/simpson.h; sourceTree = SOURCE_ROOT; };
A7E9B82B12D37EC400DA6239 /* simpsoneven.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = simpsoneven.cpp; path = source/calculators/simpsoneven.cpp; sourceTree = SOURCE_ROOT; };
A7E9B82C12D37EC400DA6239 /* simpsoneven.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = simpsoneven.h; path = source/calculators/simpsoneven.h; sourceTree = SOURCE_ROOT; };
A7E9B82D12D37EC400DA6239 /* singlelinkage.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = singlelinkage.cpp; path = source/singlelinkage.cpp; sourceTree = SOURCE_ROOT; };
A7E9B82E12D37EC400DA6239 /* slayer.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = slayer.cpp; path = source/chimera/slayer.cpp; sourceTree = SOURCE_ROOT; };
A7E9B82F12D37EC400DA6239 /* slayer.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = slayer.h; path = source/chimera/slayer.h; sourceTree = SOURCE_ROOT; };
A7E9B83012D37EC400DA6239 /* slibshuff.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = slibshuff.cpp; path = source/slibshuff.cpp; sourceTree = SOURCE_ROOT; };
A7E9B83112D37EC400DA6239 /* slibshuff.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = slibshuff.h; path = source/slibshuff.h; sourceTree = SOURCE_ROOT; };
A7E9B83212D37EC400DA6239 /* smithwilson.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = smithwilson.cpp; path = source/calculators/smithwilson.cpp; sourceTree = SOURCE_ROOT; };
A7E9B83312D37EC400DA6239 /* smithwilson.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = smithwilson.h; path = source/calculators/smithwilson.h; sourceTree = SOURCE_ROOT; };
A7E9B83412D37EC400DA6239 /* sobs.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = sobs.h; path = source/calculators/sobs.h; sourceTree = SOURCE_ROOT; };
A7E9B83512D37EC400DA6239 /* soergel.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = soergel.cpp; path = source/calculators/soergel.cpp; sourceTree = SOURCE_ROOT; };
A7E9B83612D37EC400DA6239 /* soergel.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = soergel.h; path = source/calculators/soergel.h; sourceTree = SOURCE_ROOT; };
A7E9B83712D37EC400DA6239 /* solow.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = solow.cpp; path = source/calculators/solow.cpp; sourceTree = SOURCE_ROOT; };
A7E9B83812D37EC400DA6239 /* solow.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = solow.h; path = source/calculators/solow.h; sourceTree = SOURCE_ROOT; };
A7E9B83912D37EC400DA6239 /* sparsematrix.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = sparsematrix.cpp; path = source/datastructures/sparsematrix.cpp; sourceTree = SOURCE_ROOT; };
A7E9B83A12D37EC400DA6239 /* sparsematrix.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; name = sparsematrix.hpp; path = source/datastructures/sparsematrix.hpp; sourceTree = SOURCE_ROOT; };
A7E9B83B12D37EC400DA6239 /* spearman.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = spearman.cpp; path = source/calculators/spearman.cpp; sourceTree = SOURCE_ROOT; };
A7E9B83C12D37EC400DA6239 /* spearman.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = spearman.h; path = source/calculators/spearman.h; sourceTree = SOURCE_ROOT; };
A7E9B83D12D37EC400DA6239 /* speciesprofile.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = speciesprofile.cpp; path = source/calculators/speciesprofile.cpp; sourceTree = SOURCE_ROOT; };
A7E9B83E12D37EC400DA6239 /* speciesprofile.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = speciesprofile.h; path = source/calculators/speciesprofile.h; sourceTree = SOURCE_ROOT; };
A7E9B83F12D37EC400DA6239 /* splitabundcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = splitabundcommand.cpp; path = source/commands/splitabundcommand.cpp; sourceTree = SOURCE_ROOT; };
A7E9B84012D37EC400DA6239 /* splitabundcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = splitabundcommand.h; path = source/commands/splitabundcommand.h; sourceTree = SOURCE_ROOT; };
A7E9B84112D37EC400DA6239 /* splitgroupscommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = splitgroupscommand.cpp; path = source/commands/splitgroupscommand.cpp; sourceTree = SOURCE_ROOT; };
A7E9B84212D37EC400DA6239 /* splitgroupscommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = splitgroupscommand.h; path = source/commands/splitgroupscommand.h; sourceTree = SOURCE_ROOT; };
A7E9B84312D37EC400DA6239 /* splitmatrix.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = splitmatrix.cpp; path = source/read/splitmatrix.cpp; sourceTree = SOURCE_ROOT; };
A7E9B84412D37EC400DA6239 /* splitmatrix.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = splitmatrix.h; path = source/read/splitmatrix.h; sourceTree = SOURCE_ROOT; };
A7E9B84512D37EC400DA6239 /* structchi2.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = structchi2.cpp; path = source/calculators/structchi2.cpp; sourceTree = SOURCE_ROOT; };
A7E9B84612D37EC400DA6239 /* structchi2.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = structchi2.h; path = source/calculators/structchi2.h; sourceTree = SOURCE_ROOT; };
A7E9B84712D37EC400DA6239 /* structchord.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = structchord.cpp; path = source/calculators/structchord.cpp; sourceTree = SOURCE_ROOT; };
A7E9B84812D37EC400DA6239 /* structchord.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = structchord.h; path = source/calculators/structchord.h; sourceTree = SOURCE_ROOT; };
A7E9B84912D37EC400DA6239 /* structeuclidean.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = structeuclidean.cpp; path = source/calculators/structeuclidean.cpp; sourceTree = SOURCE_ROOT; };
A7E9B84A12D37EC400DA6239 /* structeuclidean.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = structeuclidean.h; path = source/calculators/structeuclidean.h; sourceTree = SOURCE_ROOT; };
A7E9B84B12D37EC400DA6239 /* structkulczynski.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = structkulczynski.cpp; path = source/calculators/structkulczynski.cpp; sourceTree = SOURCE_ROOT; };
A7E9B84C12D37EC400DA6239 /* structkulczynski.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = structkulczynski.h; path = source/calculators/structkulczynski.h; sourceTree = SOURCE_ROOT; };
A7E9B84D12D37EC400DA6239 /* structpearson.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = structpearson.cpp; path = source/calculators/structpearson.cpp; sourceTree = SOURCE_ROOT; };
A7E9B84E12D37EC400DA6239 /* structpearson.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = structpearson.h; path = source/calculators/structpearson.h; sourceTree = SOURCE_ROOT; };
A7E9B84F12D37EC400DA6239 /* subsamplecommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = subsamplecommand.cpp; path = source/commands/subsamplecommand.cpp; sourceTree = SOURCE_ROOT; };
A7E9B85012D37EC400DA6239 /* subsamplecommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = subsamplecommand.h; path = source/commands/subsamplecommand.h; sourceTree = SOURCE_ROOT; };
A7E9B85112D37EC400DA6239 /* suffixdb.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = suffixdb.cpp; path = source/datastructures/suffixdb.cpp; sourceTree = SOURCE_ROOT; };
A7E9B85212D37EC400DA6239 /* suffixdb.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; name = suffixdb.hpp; path = source/datastructures/suffixdb.hpp; sourceTree = SOURCE_ROOT; };
A7E9B85312D37EC400DA6239 /* suffixnodes.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = suffixnodes.cpp; path = source/datastructures/suffixnodes.cpp; sourceTree = SOURCE_ROOT; };
A7E9B85412D37EC400DA6239 /* suffixnodes.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; name = suffixnodes.hpp; path = source/datastructures/suffixnodes.hpp; sourceTree = SOURCE_ROOT; };
A7E9B85512D37EC400DA6239 /* suffixtree.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = suffixtree.cpp; path = source/datastructures/suffixtree.cpp; sourceTree = SOURCE_ROOT; };
A7E9B85612D37EC400DA6239 /* suffixtree.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; name = suffixtree.hpp; path = source/datastructures/suffixtree.hpp; sourceTree = SOURCE_ROOT; };
A7E9B85712D37EC400DA6239 /* summarycommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = summarycommand.cpp; path = source/commands/summarycommand.cpp; sourceTree = SOURCE_ROOT; };
A7E9B85812D37EC400DA6239 /* summarycommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = summarycommand.h; path = source/commands/summarycommand.h; sourceTree = SOURCE_ROOT; };
A7E9B85912D37EC400DA6239 /* summarysharedcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = summarysharedcommand.cpp; path = source/commands/summarysharedcommand.cpp; sourceTree = SOURCE_ROOT; };
A7E9B85A12D37EC400DA6239 /* summarysharedcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = summarysharedcommand.h; path = source/commands/summarysharedcommand.h; sourceTree = SOURCE_ROOT; };
A7E9B85B12D37EC400DA6239 /* systemcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = systemcommand.cpp; path = source/commands/systemcommand.cpp; sourceTree = SOURCE_ROOT; };
A7E9B85C12D37EC400DA6239 /* systemcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = systemcommand.h; path = source/commands/systemcommand.h; sourceTree = SOURCE_ROOT; };
A7E9B85D12D37EC400DA6239 /* taxonomyequalizer.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = taxonomyequalizer.cpp; path = source/classifier/taxonomyequalizer.cpp; sourceTree = SOURCE_ROOT; };
A7E9B85E12D37EC400DA6239 /* taxonomyequalizer.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = taxonomyequalizer.h; path = source/classifier/taxonomyequalizer.h; sourceTree = SOURCE_ROOT; };
A7E9B85F12D37EC400DA6239 /* tree.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = tree.cpp; path = source/datastructures/tree.cpp; sourceTree = SOURCE_ROOT; };
A7E9B86012D37EC400DA6239 /* tree.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = tree.h; path = source/datastructures/tree.h; sourceTree = SOURCE_ROOT; };
A7E9B86112D37EC400DA6239 /* treecalculator.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = treecalculator.h; path = source/calculators/treecalculator.h; sourceTree = SOURCE_ROOT; };
A7E9B86212D37EC400DA6239 /* treesharedcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = treesharedcommand.cpp; path = source/commands/treesharedcommand.cpp; sourceTree = SOURCE_ROOT; };
A7E9B86312D37EC400DA6239 /* treesharedcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = treesharedcommand.h; path = source/commands/treesharedcommand.h; sourceTree = SOURCE_ROOT; };
A7E9B86412D37EC400DA6239 /* treemap.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = treemap.cpp; path = source/datastructures/treemap.cpp; sourceTree = SOURCE_ROOT; };
A7E9B86512D37EC400DA6239 /* treemap.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = treemap.h; path = source/datastructures/treemap.h; sourceTree = SOURCE_ROOT; };
A7E9B86612D37EC400DA6239 /* treenode.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = treenode.cpp; path = source/datastructures/treenode.cpp; sourceTree = SOURCE_ROOT; };
A7E9B86712D37EC400DA6239 /* treenode.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = treenode.h; path = source/datastructures/treenode.h; sourceTree = SOURCE_ROOT; };
A7E9B86812D37EC400DA6239 /* trimflowscommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = trimflowscommand.cpp; path = source/commands/trimflowscommand.cpp; sourceTree = SOURCE_ROOT; };
A7E9B86912D37EC400DA6239 /* trimflowscommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = trimflowscommand.h; path = source/commands/trimflowscommand.h; sourceTree = SOURCE_ROOT; };
A7E9B86A12D37EC400DA6239 /* trimseqscommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = trimseqscommand.cpp; path = source/commands/trimseqscommand.cpp; sourceTree = SOURCE_ROOT; };
A7E9B86B12D37EC400DA6239 /* trimseqscommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = trimseqscommand.h; path = source/commands/trimseqscommand.h; sourceTree = SOURCE_ROOT; };
A7E9B86C12D37EC400DA6239 /* unifracunweightedcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = unifracunweightedcommand.cpp; path = source/commands/unifracunweightedcommand.cpp; sourceTree = SOURCE_ROOT; };
A7E9B86D12D37EC400DA6239 /* unifracunweightedcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = unifracunweightedcommand.h; path = source/commands/unifracunweightedcommand.h; sourceTree = SOURCE_ROOT; };
A7E9B86E12D37EC400DA6239 /* unifracweightedcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = unifracweightedcommand.cpp; path = source/commands/unifracweightedcommand.cpp; sourceTree = SOURCE_ROOT; };
A7E9B86F12D37EC400DA6239 /* unifracweightedcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = unifracweightedcommand.h; path = source/commands/unifracweightedcommand.h; sourceTree = SOURCE_ROOT; };
A7E9B87012D37EC400DA6239 /* unweighted.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = unweighted.cpp; path = source/calculators/unweighted.cpp; sourceTree = SOURCE_ROOT; };
A7E9B87112D37EC400DA6239 /* unweighted.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = unweighted.h; path = source/calculators/unweighted.h; sourceTree = SOURCE_ROOT; };
A7E9B87212D37EC400DA6239 /* uvest.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = uvest.cpp; path = source/calculators/uvest.cpp; sourceTree = SOURCE_ROOT; };
A7E9B87312D37EC400DA6239 /* uvest.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = uvest.h; path = source/calculators/uvest.h; sourceTree = SOURCE_ROOT; };
A7E9B87412D37EC400DA6239 /* validcalculator.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = validcalculator.cpp; path = source/validcalculator.cpp; sourceTree = SOURCE_ROOT; };
A7E9B87512D37EC400DA6239 /* validcalculator.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = validcalculator.h; path = source/validcalculator.h; sourceTree = SOURCE_ROOT; };
A7E9B87612D37EC400DA6239 /* validparameter.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = validparameter.cpp; path = source/validparameter.cpp; sourceTree = SOURCE_ROOT; };
A7E9B87712D37EC400DA6239 /* validparameter.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = validparameter.h; path = source/validparameter.h; sourceTree = SOURCE_ROOT; };
A7E9B87812D37EC400DA6239 /* venn.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = venn.cpp; path = source/venn.cpp; sourceTree = SOURCE_ROOT; };
A7E9B87912D37EC400DA6239 /* venn.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = venn.h; path = source/venn.h; sourceTree = SOURCE_ROOT; };
A7E9B87A12D37EC400DA6239 /* venncommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = venncommand.cpp; path = source/commands/venncommand.cpp; sourceTree = SOURCE_ROOT; };
A7E9B87B12D37EC400DA6239 /* venncommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = venncommand.h; path = source/commands/venncommand.h; sourceTree = SOURCE_ROOT; };
A7E9B87C12D37EC400DA6239 /* weighted.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = weighted.cpp; path = source/calculators/weighted.cpp; sourceTree = SOURCE_ROOT; };
A7E9B87D12D37EC400DA6239 /* weighted.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = weighted.h; path = source/calculators/weighted.h; sourceTree = SOURCE_ROOT; };
A7E9B87E12D37EC400DA6239 /* weightedlinkage.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = weightedlinkage.cpp; path = source/weightedlinkage.cpp; sourceTree = SOURCE_ROOT; };
A7E9B87F12D37EC400DA6239 /* whittaker.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = whittaker.cpp; path = source/calculators/whittaker.cpp; sourceTree = SOURCE_ROOT; };
A7E9B88012D37EC400DA6239 /* whittaker.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = whittaker.h; path = source/calculators/whittaker.h; sourceTree = SOURCE_ROOT; };
A7EEB0F414F29BFD00344B83 /* classifytreecommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = classifytreecommand.cpp; path = source/commands/classifytreecommand.cpp; sourceTree = SOURCE_ROOT; };
A7EEB0F714F29C1B00344B83 /* classifytreecommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = classifytreecommand.h; path = source/commands/classifytreecommand.h; sourceTree = SOURCE_ROOT; };
A7F9F5CD141A5E500032F693 /* sequenceparser.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = sequenceparser.h; path = source/datastructures/sequenceparser.h; sourceTree = SOURCE_ROOT; };
A7F9F5CE141A5E500032F693 /* sequenceparser.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = sequenceparser.cpp; path = source/datastructures/sequenceparser.cpp; sourceTree = SOURCE_ROOT; };
A7FA10001302E096003860FE /* mantelcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = mantelcommand.h; path = source/commands/mantelcommand.h; sourceTree = SOURCE_ROOT; };
A7FA10011302E096003860FE /* mantelcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = mantelcommand.cpp; path = source/commands/mantelcommand.cpp; sourceTree = SOURCE_ROOT; };
A7FC480C12D788F20055BC5C /* linearalgebra.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = linearalgebra.h; path = source/linearalgebra.h; sourceTree = SOURCE_ROOT; };
A7FC480D12D788F20055BC5C /* linearalgebra.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = linearalgebra.cpp; path = source/linearalgebra.cpp; sourceTree = SOURCE_ROOT; };
A7FC486512D795D60055BC5C /* pcacommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = pcacommand.h; path = source/commands/pcacommand.h; sourceTree = SOURCE_ROOT; };
A7FC486612D795D60055BC5C /* pcacommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = pcacommand.cpp; path = source/commands/pcacommand.cpp; sourceTree = SOURCE_ROOT; };
A7FE7C3E1330EA1000F7B327 /* getcurrentcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = getcurrentcommand.h; path = source/commands/getcurrentcommand.h; sourceTree = SOURCE_ROOT; };
A7FE7C3F1330EA1000F7B327 /* getcurrentcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = getcurrentcommand.cpp; path = source/commands/getcurrentcommand.cpp; sourceTree = SOURCE_ROOT; };
A7FE7E6B13311EA400F7B327 /* setcurrentcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = setcurrentcommand.h; path = source/commands/setcurrentcommand.h; sourceTree = SOURCE_ROOT; };
A7FE7E6C13311EA400F7B327 /* setcurrentcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = setcurrentcommand.cpp; path = source/commands/setcurrentcommand.cpp; sourceTree = SOURCE_ROOT; };
A7FF19F0140FFDA500AD216D /* trimoligos.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = trimoligos.h; path = source/trimoligos.h; sourceTree = SOURCE_ROOT; };
A7FF19F1140FFDA500AD216D /* trimoligos.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = trimoligos.cpp; path = source/trimoligos.cpp; sourceTree = SOURCE_ROOT; };
A7FFB556142CA02C004884F2 /* summarytaxcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = summarytaxcommand.h; path = source/commands/summarytaxcommand.h; sourceTree = SOURCE_ROOT; };
A7FFB557142CA02C004884F2 /* summarytaxcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = summarytaxcommand.cpp; path = source/commands/summarytaxcommand.cpp; sourceTree = SOURCE_ROOT; };
F40859AF280F2DDB00F19B1A /* README.txt */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = text; path = README.txt; sourceTree = "<group>"; };
F40859B0280F3CB200F19B1A /* README.txt */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = text; path = README.txt; sourceTree = "<group>"; };
F40859B12811AE6500F19B1A /* README.txt */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = text; path = README.txt; sourceTree = "<group>"; };
F4103A4B25A3A40F001ED741 /* libboost_filesystem.a */ = {isa = PBXFileReference; lastKnownFileType = archive.ar; name = libboost_filesystem.a; path = mothur_resources/libs/libboost_filesystem.a; sourceTree = SOURCE_ROOT; };
F4103A4F25A3A411001ED741 /* libboost_iostreams.a */ = {isa = PBXFileReference; lastKnownFileType = archive.ar; name = libboost_iostreams.a; path = mothur_resources/libs/libboost_iostreams.a; sourceTree = SOURCE_ROOT; };
F4103A5D25A3A7C7001ED741 /* libhdf5_hl.a */ = {isa = PBXFileReference; lastKnownFileType = archive.ar; name = libhdf5_hl.a; path = mothur_resources/libs/libhdf5_hl.a; sourceTree = SOURCE_ROOT; };
F4103A5E25A3A7C7001ED741 /* libhdf5_hl_cpp.a */ = {isa = PBXFileReference; lastKnownFileType = archive.ar; name = libhdf5_hl_cpp.a; path = mothur_resources/libs/libhdf5_hl_cpp.a; sourceTree = SOURCE_ROOT; };
F4103A5F25A3A7C7001ED741 /* libhdf5.a */ = {isa = PBXFileReference; lastKnownFileType = archive.ar; name = libhdf5.a; path = mothur_resources/libs/libhdf5.a; sourceTree = SOURCE_ROOT; };
F4103A6025A3A7C7001ED741 /* libhdf5_cpp.a */ = {isa = PBXFileReference; lastKnownFileType = archive.ar; name = libhdf5_cpp.a; path = mothur_resources/libs/libhdf5_cpp.a; sourceTree = SOURCE_ROOT; };
F4103A6F25A4C4D2001ED741 /* diversityestimatorcommand.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; name = diversityestimatorcommand.hpp; path = source/commands/diversityestimatorcommand.hpp; sourceTree = SOURCE_ROOT; };
F4103A7F25A4C831001ED741 /* libgslcblas.a */ = {isa = PBXFileReference; lastKnownFileType = archive.ar; name = libgslcblas.a; path = mothur_resources/libs/libgslcblas.a; sourceTree = SOURCE_ROOT; };
F4103A9D25A4D00F001ED741 /* libgsl.a */ = {isa = PBXFileReference; lastKnownFileType = archive.ar; name = libgsl.a; path = mothur_resources/libs/libgsl.a; sourceTree = SOURCE_ROOT; };
F41A1B8F261257DE00144985 /* kmerdist.cpp */ = {isa = PBXFileReference; lastKnownFileType = sourcecode.cpp.cpp; name = kmerdist.cpp; path = source/calculators/kmerdist.cpp; sourceTree = SOURCE_ROOT; };
F41A1B90261257DE00144985 /* kmerdist.hpp */ = {isa = PBXFileReference; lastKnownFileType = sourcecode.cpp.h; name = kmerdist.hpp; path = source/calculators/kmerdist.hpp; sourceTree = SOURCE_ROOT; };
F44268EC27BD52D50000C15D /* alignmusclecommand.cpp */ = {isa = PBXFileReference; lastKnownFileType = sourcecode.cpp.cpp; path = alignmusclecommand.cpp; sourceTree = "<group>"; };
F44268ED27BD52D50000C15D /* alignmusclecommand.hpp */ = {isa = PBXFileReference; lastKnownFileType = sourcecode.cpp.h; path = alignmusclecommand.hpp; sourceTree = "<group>"; };
F45A2E3B25A78B4D00994F76 /* contigsreport.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; path = contigsreport.hpp; sourceTree = "<group>"; };
F45A2E3C25A78B4D00994F76 /* contigsreport.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = contigsreport.cpp; sourceTree = "<group>"; };
F45A2E5025BF229600994F76 /* main.cpp */ = {isa = PBXFileReference; lastKnownFileType = sourcecode.cpp.cpp; path = main.cpp; sourceTree = "<group>"; };
F490972626090AC500C1B24F /* External_Libraries_INSTALL */ = {isa = PBXFileReference; lastKnownFileType = text; path = External_Libraries_INSTALL; sourceTree = "<group>"; };
F4A866B5265BE7720010479A /* protein.cpp */ = {isa = PBXFileReference; lastKnownFileType = sourcecode.cpp.cpp; name = protein.cpp; path = source/datastructures/protein.cpp; sourceTree = SOURCE_ROOT; };
F4A866B6265BE7720010479A /* protein.hpp */ = {isa = PBXFileReference; lastKnownFileType = sourcecode.cpp.h; name = protein.hpp; path = source/datastructures/protein.hpp; sourceTree = SOURCE_ROOT; };
F4A866BD265BE7EC0010479A /* aminoacid.cpp */ = {isa = PBXFileReference; lastKnownFileType = sourcecode.cpp.cpp; path = aminoacid.cpp; sourceTree = "<group>"; };
F4A866BE265BE7EC0010479A /* aminoacid.hpp */ = {isa = PBXFileReference; lastKnownFileType = sourcecode.cpp.h; path = aminoacid.hpp; sourceTree = "<group>"; };
F4A866CA265EBD270010479A /* jtt.hpp */ = {isa = PBXFileReference; lastKnownFileType = sourcecode.cpp.h; path = jtt.hpp; sourceTree = "<group>"; };
F4A866CF266912830010479A /* proteindb.cpp */ = {isa = PBXFileReference; lastKnownFileType = sourcecode.cpp.cpp; path = proteindb.cpp; sourceTree = "<group>"; };
F4A866D0266912830010479A /* proteindb.hpp */ = {isa = PBXFileReference; lastKnownFileType = sourcecode.cpp.h; path = proteindb.hpp; sourceTree = "<group>"; };
F4A866DA266946AB0010479A /* storagedatabase.hpp */ = {isa = PBXFileReference; lastKnownFileType = sourcecode.cpp.h; path = storagedatabase.hpp; sourceTree = "<group>"; };
F4A86700268B71A80010479A /* pmb.hpp */ = {isa = PBXFileReference; lastKnownFileType = sourcecode.cpp.h; path = pmb.hpp; sourceTree = "<group>"; };
F4A86707268E3AFA0010479A /* pam.hpp */ = {isa = PBXFileReference; lastKnownFileType = sourcecode.cpp.h; path = pam.hpp; sourceTree = "<group>"; };
F4A86711268F5CCE0010479A /* kimura.cpp */ = {isa = PBXFileReference; lastKnownFileType = sourcecode.cpp.cpp; path = kimura.cpp; sourceTree = "<group>"; };
F4A86712268F5CCE0010479A /* kimura.hpp */ = {isa = PBXFileReference; lastKnownFileType = sourcecode.cpp.h; path = kimura.hpp; sourceTree = "<group>"; };
F4B4B0DA27396EF7003B2133 /* translateseqscommand.cpp */ = {isa = PBXFileReference; lastKnownFileType = sourcecode.cpp.cpp; path = translateseqscommand.cpp; sourceTree = "<group>"; };
F4B4B0DB27396EF7003B2133 /* translateseqscommand.hpp */ = {isa = PBXFileReference; lastKnownFileType = sourcecode.cpp.h; path = translateseqscommand.hpp; sourceTree = "<group>"; };
/* End PBXFileReference section */
/* Begin PBXFrameworksBuildPhase section */
481FB5161AC0A63E0076CFF3 /* Frameworks */ = {
isa = PBXFrameworksBuildPhase;
buildActionMask = 2147483647;
files = (
);
runOnlyForDeploymentPostprocessing = 0;
};
8DD76FAD0486AB0100D96B5E /* Frameworks */ = {
isa = PBXFrameworksBuildPhase;
buildActionMask = 2147483647;
files = (
);
runOnlyForDeploymentPostprocessing = 0;
};
/* End PBXFrameworksBuildPhase section */
/* Begin PBXGroup section */
08FB7794FE84155DC02AAC07 /* mothur */ = {
isa = PBXGroup;
children = (
4837E5D622DE1BC400D3234B /* TestBatches */,
08FB7795FE84155DC02AAC07 /* Source */,
481FB51A1AC0A63E0076CFF3 /* TestMothur */,
F45A2E4F25BF229600994F76 /* mothur */,
1AB674ADFE9D54B511CA2CBB /* Products */,
489ECDA2215EB30A0036D42C /* Frameworks */,
);
name = mothur;
sourceTree = "<group>";
};
08FB7795FE84155DC02AAC07 /* Source */ = {
isa = PBXGroup;
children = (
4875F69922DCC723006A7D8C /* Ubuntu_20_Build.txt */,
F490972626090AC500C1B24F /* External_Libraries_INSTALL */,
A7A61F1A130035C800E05B6B /* LICENSE.md */,
48FD9946243E5FB10017C521 /* Makefile_cluster */,
A70332B512D3A13400761E33 /* Makefile */,
484F21691BA1C5F8001C1B5F /* makefile-internal */,
481623E31B58267D004C60B7 /* INSTALL.md */,
2114A7671C654D7400D3D8D9 /* averagelinkage.cpp */,
A77B718A173D40E4002163C2 /* calcsparcc.h */,
A77B7189173D40E4002163C2 /* calcsparcc.cpp */,
A7E9BA4F12D398D700DA6239 /* clearcut */,
A7E9B69812D37EC400DA6239 /* cluster.cpp */,
A7E9B69912D37EC400DA6239 /* cluster.hpp */,
A7E9B69A12D37EC400DA6239 /* clusterclassic.cpp */,
A7E9B69B12D37EC400DA6239 /* clusterclassic.h */,
A7E9BA3F12D395F700DA6239 /* calculators */,
A7E9BA4512D3965600DA6239 /* chimera */,
A7E9BA4B12D3966900DA6239 /* classifier */,
A7E9B6A612D37EC400DA6239 /* collect.cpp */,
A7E9B6A712D37EC400DA6239 /* collect.h */,
A7E9B6AA12D37EC400DA6239 /* collectdisplay.h */,
A7E9B6AB12D37EC400DA6239 /* collectorscurvedata.h */,
48F98E4C1A9CFD670005E81B /* completelinkage.cpp */,
A7E9BA3812D3956100DA6239 /* commands */,
A7E9B6AF12D37EC400DA6239 /* commandfactory.cpp */,
A7E9B6B012D37EC400DA6239 /* commandfactory.hpp */,
A7E9B6B112D37EC400DA6239 /* commandoptionparser.cpp */,
A7E9B6B212D37EC400DA6239 /* commandoptionparser.hpp */,
A7DAAFA3133A254E003956EB /* commandparameter.h */,
A7D395C1184FA34300A350D7 /* communitytype */,
A7E9BA4212D3960D00DA6239 /* containers */,
A7E9B6B612D37EC400DA6239 /* consensus.h */,
A7E9B6B512D37EC400DA6239 /* consensus.cpp */,
A7AACFBA132FE008003D6C4D /* currentfile.h */,
48B44EED1FB5006500789C45 /* currentfile.cpp */,
A7E9B6C912D37EC400DA6239 /* display.h */,
A7E9B6D112D37EC400DA6239 /* dlibshuff.cpp */,
A7E9B6D212D37EC400DA6239 /* dlibshuff.h */,
A7E9B6D912D37EC400DA6239 /* endiannessmacros.h */,
48ED1E76235E1A3B003E66F7 /* engines */,
A7E9B6E012D37EC400DA6239 /* fileoutput.cpp */,
A7E9B6E112D37EC400DA6239 /* fileoutput.h */,
A7E9B71112D37EC400DA6239 /* gotohoverlap.hpp */,
A7E9B71012D37EC400DA6239 /* gotohoverlap.cpp */,
A7E9B71C12D37EC400DA6239 /* heatmap.cpp */,
A7E9B71D12D37EC400DA6239 /* heatmap.h */,
A7E9B72012D37EC400DA6239 /* heatmapsim.cpp */,
A7E9B72112D37EC400DA6239 /* heatmapsim.h */,
A7E9B72E12D37EC400DA6239 /* inputdata.h */,
A7E9B72D12D37EC400DA6239 /* inputdata.cpp */,
A7E9B73912D37EC400DA6239 /* libshuff.cpp */,
A7E9B73A12D37EC400DA6239 /* libshuff.h */,
A7FC480C12D788F20055BC5C /* linearalgebra.h */,
A7FC480D12D788F20055BC5C /* linearalgebra.cpp */,
A7E9BA5612D39BD800DA6239 /* metastats */,
A7E9B75B12D37EC400DA6239 /* mothur.cpp */,
A7E9B75C12D37EC400DA6239 /* mothur.h */,
A7E9B75D12D37EC400DA6239 /* mothurout.cpp */,
A7E9B75E12D37EC400DA6239 /* mothurout.h */,
A774104714696F320098E6AC /* myseqdist.h */,
A774104614696F320098E6AC /* myseqdist.cpp */,
A7E9B76112D37EC400DA6239 /* nast.cpp */,
A7E9B76212D37EC400DA6239 /* nast.hpp */,
A7E9B76712D37EC400DA6239 /* noalign.cpp */,
A7E9B76812D37EC400DA6239 /* noalign.hpp */,
A7E9B76512D37EC400DA6239 /* needlemanoverlap.cpp */,
A7E9B76612D37EC400DA6239 /* needlemanoverlap.hpp */,
A7E9B77012D37EC400DA6239 /* observable.h */,
48FB99CD20A4F3FB00FF9F6E /* optifitcluster.cpp */,
48FB99CE20A4F3FB00FF9F6E /* optifitcluster.hpp */,
48910D4C1D58CBFC00F60EDB /* opticluster.h */,
48910D451D58CAD700F60EDB /* opticluster.cpp */,
A7E9B77512D37EC400DA6239 /* optionparser.cpp */,
A7E9B77612D37EC400DA6239 /* optionparser.h */,
A7E9B77B12D37EC400DA6239 /* overlap.cpp */,
A7E9B77C12D37EC400DA6239 /* overlap.hpp */,
A7E9B7A712D37EC400DA6239 /* raredisplay.cpp */,
A7E9B7A812D37EC400DA6239 /* raredisplay.h */,
A7E9B7A912D37EC400DA6239 /* rarefact.cpp */,
A7E9B7AA12D37EC400DA6239 /* rarefact.h */,
A7E9B7AD12D37EC400DA6239 /* rarefactioncurvedata.h */,
7E6BE10812F710D8007ADDBE /* refchimeratest.h */,
7E6BE10912F710D8007ADDBE /* refchimeratest.cpp */,
48B01D2A2016470F006BE140 /* sensspeccalc.cpp */,
48B01D2B2016470F006BE140 /* sensspeccalc.hpp */,
A77410F514697C300098E6AC /* seqnoise.h */,
486741981FD9ACCE00B07480 /* sharedwriter.hpp */,
A7E9BA5312D39A5E00DA6239 /* read */,
A7E9B82D12D37EC400DA6239 /* singlelinkage.cpp */,
A7E9B83012D37EC400DA6239 /* slibshuff.cpp */,
A7E9B83112D37EC400DA6239 /* slibshuff.h */,
A7876A28152A018B00A0AE86 /* subsample.h */,
A7876A25152A017C00A0AE86 /* subsample.cpp */,
4889EA211E8962D50054E0BB /* summary.hpp */,
4889EA201E8962D50054E0BB /* summary.cpp */,
7B17437A17AF6F02004C161B /* svm */,
A7C3DC0E14FE469500FE1924 /* trialswap2.h */,
A7C3DC0D14FE469500FE1924 /* trialSwap2.cpp */,
A7FF19F0140FFDA500AD216D /* trimoligos.h */,
A7FF19F1140FFDA500AD216D /* trimoligos.cpp */,
A77410F414697C300098E6AC /* seqnoise.cpp */,
48B44EF01FB9EF8200789C45 /* utils.cpp */,
48B44EF11FB9EF8200789C45 /* utils.hpp */,
48789AEE206176EF00A7D848 /* utf8 */,
A7E9B87412D37EC400DA6239 /* validcalculator.cpp */,
A7E9B87512D37EC400DA6239 /* validcalculator.h */,
A7E9B87612D37EC400DA6239 /* validparameter.cpp */,
A7E9B87712D37EC400DA6239 /* validparameter.h */,
A7E9B87812D37EC400DA6239 /* venn.cpp */,
A7E9B87912D37EC400DA6239 /* venn.h */,
489B55701BCD7F0100FB7DC8 /* vsearchfileparser.cpp */,
489B55711BCD7F0100FB7DC8 /* vsearchfileparser.h */,
A7D9378B17B15215001E90B0 /* wilcox.h */,
A7D9378917B146B5001E90B0 /* wilcox.cpp */,
A7E9B87E12D37EC400DA6239 /* weightedlinkage.cpp */,
4867419A1FD9B3FE00B07480 /* writer.h */,
);
name = Source;
sourceTree = "<group>";
};
1AB674ADFE9D54B511CA2CBB /* Products */ = {
isa = PBXGroup;
children = (
8DD76FB20486AB0100D96B5E /* mothur */,
481FB5191AC0A63E0076CFF3 /* TestMothur */,
);
name = Products;
sourceTree = "<group>";
};
480D1E2B1EA6858700BF9C77 /* fakes */ = {
isa = PBXGroup;
children = (
480D1E2D1EA685C500BF9C77 /* fakemcc.hpp */,
48CC010E1EB79E49009D61E6 /* fakeoligos.h */,
480D1E2F1EA92D5500BF9C77 /* fakeoptimatrix.cpp */,
480D1E301EA92D5500BF9C77 /* fakeoptimatrix.hpp */,
);
name = fakes;
path = TestMothur;
sourceTree = SOURCE_ROOT;
};
481FB51A1AC0A63E0076CFF3 /* TestMothur */ = {
isa = PBXGroup;
children = (
481FB51B1AC0A63E0076CFF3 /* main.cpp */,
480D1E2B1EA6858700BF9C77 /* fakes */,
48F06CCA1D74BC6F004A45DD /* testclassifier */,
48D6E9691CA4262A008DF76B /* dataset.cpp */,
48D6E96A1CA4262A008DF76B /* dataset.h */,
48910D4F1D58E26C00F60EDB /* distcdataset.h */,
48910D501D58E26C00F60EDB /* distcdataset.cpp */,
48576EA61D05F59300BBC9C0 /* distpdataset.cpp */,
48576EA71D05F59300BBC9C0 /* distpdataset.h */,
4827A4DA1CB3ED2100345170 /* fastqdataset.cpp */,
4827A4DB1CB3ED2100345170 /* fastqdataset.h */,
480D1E281EA681D100BF9C77 /* testclustercalcs.cpp */,
480D1E291EA681D100BF9C77 /* testclustercalcs.hpp */,
48910D4E1D58E26C00F60EDB /* testopticluster.h */,
48910D4D1D58E26C00F60EDB /* testopticluster.cpp */,
48098ED4219DE7A500031FA4 /* testsubsample.cpp */,
48098ED5219DE7A500031FA4 /* testsubsample.hpp */,
4846AD881D3810DD00DE9913 /* testtrimoligos.cpp */,
4846AD891D3810DD00DE9913 /* testtrimoligos.hpp */,
48D6E9661CA42389008DF76B /* testvsearchfileparser.cpp */,
48D6E9671CA42389008DF76B /* testvsearchfileparser.h */,
481FB5221AC0AA010076CFF3 /* testcontainers */,
481FB5211AC0A9B40076CFF3 /* testcommands */,
);
path = TestMothur;
sourceTree = "<group>";
};
481FB5211AC0A9B40076CFF3 /* testcommands */ = {
isa = PBXGroup;
children = (
4829D9651B8387D0002EEED4 /* testbiominfocommand.cpp */,
4829D9661B8387D0002EEED4 /* testbiominfocommand.h */,
48C728741B6AB4CD00D40830 /* testgetgroupscommand.h */,
48C728731B6AB4CD00D40830 /* testgetgroupscommand.cpp */,
48C728691B69598400D40830 /* testmergegroupscommand.h */,
48C728681B69598400D40830 /* testmergegroupscommand.cpp */,
48A11C6C1CDA40F0003481D8 /* testrenamefilecommand.cpp */,
48A11C6D1CDA40F0003481D8 /* testrenamefilecommand.h */,
48B662011BBB1B6600997EE4 /* testrenameseqscommand.cpp */,
48B662021BBB1B6600997EE4 /* testrenameseqscommand.h */,
48C7286F1B6AB3B900D40830 /* testremovegroupscommand.cpp */,
48C728701B6AB3B900D40830 /* testremovegroupscommand.h */,
481FB52D1AC1B0CB0076CFF3 /* testsetseedcommand.cpp */,
);
name = testcommands;
path = TestMothur;
sourceTree = SOURCE_ROOT;
};
481FB5221AC0AA010076CFF3 /* testcontainers */ = {
isa = PBXGroup;
children = (
480E8DAF1CAB12ED00A0D137 /* testfastqread.cpp */,
480E8DB01CAB12ED00A0D137 /* testfastqread.h */,
4810D5B5218208CC00C668E8 /* testcounttable.cpp */,
4810D5B6218208CC00C668E8 /* testcounttable.hpp */,
489387F7210F633E00284329 /* testOligos.cpp */,
489387F8210F633E00284329 /* testOligos.hpp */,
48576EA31D05E8F600BBC9C0 /* testoptimatrix.cpp */,
48576EA41D05E8F600BBC9C0 /* testoptimatrix.h */,
489387F42107A60C00284329 /* testoptirefmatrix.cpp */,
489387F52107A60C00284329 /* testoptirefmatrix.hpp */,
48C728641B66A77800D40830 /* testsequence.cpp */,
48C728761B6AB4EE00D40830 /* testsequence.h */,
4803D5AE211CD839001C63B5 /* testsharedrabundfloatvector.cpp */,
4803D5AF211CD839001C63B5 /* testsharedrabundfloatvector.hpp */,
4803D5B421231D9D001C63B5 /* testsharedrabundfloatvectors.cpp */,
4803D5B521231D9D001C63B5 /* testsharedrabundfloatvectors.hpp */,
4803D5AB211CA67F001C63B5 /* testsharedrabundvector.cpp */,
4803D5AC211CA67F001C63B5 /* testsharedrabundvector.hpp */,
4803D5B1211DDA5A001C63B5 /* testsharedrabundvectors.cpp */,
4803D5B2211DDA5A001C63B5 /* testsharedrabundvectors.hpp */,
);
name = testcontainers;
path = TestMothur;
sourceTree = SOURCE_ROOT;
};
484976DC22552BEA00F3A291 /* diversitycalcs */ = {
isa = PBXGroup;
children = (
484976DD22552E0B00F3A291 /* erarefaction.cpp */,
484976DE22552E0B00F3A291 /* erarefaction.hpp */,
48E7E0A42278AD4800B74910 /* diversityutils.cpp */,
48E7E0A52278AD4800B74910 /* diversityutils.hpp */,
484976E12255412400F3A291 /* igabundance.cpp */,
484976E22255412400F3A291 /* igabundance.hpp */,
4809EC9F2280898E00B4D0E5 /* igrarefaction.cpp */,
4809ECA02280898E00B4D0E5 /* igrarefaction.hpp */,
4809ECA322831A5E00B4D0E5 /* lnabundance.cpp */,
4809ECA422831A5E00B4D0E5 /* lnabundance.hpp */,
4815BEAF2289E13500677EE2 /* lnrarefaction.cpp */,
4815BEB02289E13500677EE2 /* lnrarefaction.hpp */,
4815BEB2228B371E00677EE2 /* lnshift.cpp */,
4815BEB3228B371E00677EE2 /* lnshift.hpp */,
4815BEB6228DD18400677EE2 /* lsabundance.cpp */,
4815BEB7228DD18400677EE2 /* lsabundance.hpp */,
4815BEBA2293189600677EE2 /* lsrarefaction.cpp */,
4815BEBB2293189600677EE2 /* lsrarefaction.hpp */,
4815BEBF2295CE6800677EE2 /* siabundance.cpp */,
4815BEC02295CE6800677EE2 /* siabundance.hpp */,
4815BEC32296F19500677EE2 /* sirarefaction.cpp */,
4815BEC42296F19500677EE2 /* sirarefaction.hpp */,
4815BEC722970FA700677EE2 /* sishift.cpp */,
4815BEC822970FA700677EE2 /* sishift.hpp */,
483A9BAC225BBE55006102DF /* metroig.cpp */,
483A9BAD225BBE55006102DF /* metroig.hpp */,
4809EC94227B2CB500B4D0E5 /* metrolognormal.hpp */,
48E7E0A12278A21B00B74910 /* metrolognormal.cpp */,
4809EC96227B405700B4D0E5 /* metrologstudent.cpp */,
4809EC9A227B5D2500B4D0E5 /* metrologstudent.hpp */,
4809EC9B227C9B3100B4D0E5 /* metrosichel.cpp */,
4809EC9C227C9B3100B4D0E5 /* metrosichel.hpp */,
);
name = diversitycalcs;
sourceTree = "<group>";
};
48789AEE206176EF00A7D848 /* utf8 */ = {
isa = PBXGroup;
children = (
48789AEF2061776100A7D848 /* utf8.h */,
48789AF02061776100A7D848 /* checked.h */,
48789AF12061776100A7D848 /* core.h */,
48789AF22061776100A7D848 /* unchecked.h */,
);
name = utf8;
sourceTree = SOURCE_ROOT;
};
489ECDA2215EB30A0036D42C /* Frameworks */ = {
isa = PBXGroup;
children = (
F4103A9D25A4D00F001ED741 /* libgsl.a */,
F4103A7F25A4C831001ED741 /* libgslcblas.a */,
F4103A6025A3A7C7001ED741 /* libhdf5_cpp.a */,
F4103A5E25A3A7C7001ED741 /* libhdf5_hl_cpp.a */,
F4103A5D25A3A7C7001ED741 /* libhdf5_hl.a */,
F4103A5F25A3A7C7001ED741 /* libhdf5.a */,
F4103A4F25A3A411001ED741 /* libboost_iostreams.a */,
F4103A4B25A3A40F001ED741 /* libboost_filesystem.a */,
);
name = Frameworks;
sourceTree = "<group>";
};
48E5443E1E9C28CC00FF6AB8 /* clustercalcs */ = {
isa = PBXGroup;
children = (
48E5446E1E9D3B2D00FF6AB8 /* accuracy.cpp */,
48E5446F1E9D3B2D00FF6AB8 /* accuracy.hpp */,
48E5446B1E9D3A8C00FF6AB8 /* f1score.hpp */,
48E5446A1E9D3A8C00FF6AB8 /* f1score.cpp */,
48E5447A1E9D3F0400FF6AB8 /* fdr.cpp */,
48E5447B1E9D3F0400FF6AB8 /* fdr.hpp */,
48E5445B1E9C2F0F00FF6AB8 /* fn.cpp */,
48E5445C1E9C2F0F00FF6AB8 /* fn.hpp */,
48E544581E9C2E6500FF6AB8 /* fp.hpp */,
48E544571E9C2E6500FF6AB8 /* fp.cpp */,
48E5445F1E9C2FB800FF6AB8 /* fpfn.cpp */,
48E544601E9C2FB800FF6AB8 /* fpfn.hpp */,
48E544401E9C292900FF6AB8 /* mcc.hpp */,
48E5443F1E9C292900FF6AB8 /* mcc.cpp */,
48E544761E9D3CE400FF6AB8 /* npv.cpp */,
48E544771E9D3CE400FF6AB8 /* npv.hpp */,
48E544721E9D3C1200FF6AB8 /* ppv.cpp */,
48E544731E9D3C1200FF6AB8 /* ppv.hpp */,
48E544431E9C2B1000FF6AB8 /* sensitivity.cpp */,
48E544441E9C2B1000FF6AB8 /* sensitivity.hpp */,
48E544471E9C2BE100FF6AB8 /* specificity.cpp */,
48E544481E9C2BE100FF6AB8 /* specificity.hpp */,
48E544531E9C2DF500FF6AB8 /* tn.cpp */,
48E544541E9C2DF500FF6AB8 /* tn.hpp */,
48E5444F1E9C2CFD00FF6AB8 /* tp.cpp */,
48E544501E9C2CFD00FF6AB8 /* tp.hpp */,
48E5444B1E9C2C8F00FF6AB8 /* tptn.cpp */,
48E5444C1E9C2C8F00FF6AB8 /* tptn.hpp */,
);
name = clustercalcs;
sourceTree = "<group>";
};
48E544661E9D12CA00FF6AB8 /* otucalcs */ = {
isa = PBXGroup;
children = (
A7E9B79D12D37EC400DA6239 /* qstat.cpp */,
A7E9B79E12D37EC400DA6239 /* qstat.h */,
A7E9B7E512D37EC400DA6239 /* shannon.cpp */,
A7E9B7E612D37EC400DA6239 /* shannon.h */,
A7E9B7E712D37EC400DA6239 /* shannoneven.cpp */,
A7E9B7E812D37EC400DA6239 /* shannoneven.h */,
A7A09B0E18773BF700FAA081 /* shannonrange.h */,
A7A09B0F18773C0E00FAA081 /* shannonrange.cpp */,
A7E9B7EA12D37EC400DA6239 /* sharedace.h */,
A7E9B7E912D37EC400DA6239 /* sharedace.cpp */,
A7E9B7EC12D37EC400DA6239 /* sharedanderbergs.cpp */,
A7E9B7ED12D37EC400DA6239 /* sharedanderbergs.h */,
A7E9B7EE12D37EC400DA6239 /* sharedbraycurtis.cpp */,
A7E9B7EF12D37EC400DA6239 /* sharedbraycurtis.h */,
A7E9B7F012D37EC400DA6239 /* sharedchao1.cpp */,
A7E9B7F112D37EC400DA6239 /* sharedchao1.h */,
A7E9B7F412D37EC400DA6239 /* sharedjabund.cpp */,
A7E9B7F512D37EC400DA6239 /* sharedjabund.h */,
A7E9B7F612D37EC400DA6239 /* sharedjackknife.cpp */,
A7E9B7F712D37EC400DA6239 /* sharedjackknife.h */,
A7E9B64F12D37EC300DA6239 /* ace.cpp */,
A7E9B65012D37EC300DA6239 /* ace.h */,
A7E9B65E12D37EC300DA6239 /* bergerparker.cpp */,
A7E9B65F12D37EC300DA6239 /* bergerparker.h */,
A7E9B66612D37EC400DA6239 /* boneh.cpp */,
A7E9B66712D37EC400DA6239 /* boneh.h */,
A7E9B66812D37EC400DA6239 /* bootstrap.cpp */,
A7E9B66912D37EC400DA6239 /* bootstrap.h */,
A7E9B66C12D37EC400DA6239 /* bstick.cpp */,
A7E9B66D12D37EC400DA6239 /* bstick.h */,
A7E9B67012D37EC400DA6239 /* canberra.cpp */,
A7E9B67112D37EC400DA6239 /* canberra.h */,
A7E9B67612D37EC400DA6239 /* chao1.cpp */,
A7E9B67712D37EC400DA6239 /* chao1.h */,
A7E9B6BB12D37EC400DA6239 /* coverage.cpp */,
A7E9B6BC12D37EC400DA6239 /* coverage.h */,
A7E9B6D712D37EC400DA6239 /* efron.cpp */,
A7E9B6D812D37EC400DA6239 /* efron.h */,
A7E9B6F012D37EC400DA6239 /* geom.cpp */,
A7E9B6F112D37EC400DA6239 /* geom.h */,
A7E9B70E12D37EC400DA6239 /* goodscoverage.cpp */,
A7E9B70F12D37EC400DA6239 /* goodscoverage.h */,
A7E9B71212D37EC400DA6239 /* gower.cpp */,
A7E9B71312D37EC400DA6239 /* gower.h */,
A7E9B71612D37EC400DA6239 /* hamming.cpp */,
A7E9B71712D37EC400DA6239 /* hamming.h */,
A7E9B72412D37EC400DA6239 /* heip.cpp */,
A7E9B72512D37EC400DA6239 /* heip.h */,
A7E9B72612D37EC400DA6239 /* hellinger.cpp */,
A7E9B72712D37EC400DA6239 /* hellinger.h */,
A7E9B72F12D37EC400DA6239 /* invsimpson.cpp */,
A7E9B73012D37EC400DA6239 /* invsimpson.h */,
A7E9B73112D37EC400DA6239 /* jackknife.cpp */,
A7E9B73212D37EC400DA6239 /* jackknife.h */,
A7E9B74112D37EC400DA6239 /* logsd.cpp */,
A7E9B74212D37EC400DA6239 /* logsd.h */,
A7E9B74712D37EC400DA6239 /* manhattan.cpp */,
A7E9B74812D37EC400DA6239 /* manhattan.h */,
A7E9B74B12D37EC400DA6239 /* memchi2.cpp */,
A7E9B74C12D37EC400DA6239 /* memchi2.h */,
A7E9B74D12D37EC400DA6239 /* memchord.cpp */,
A7E9B74E12D37EC400DA6239 /* memchord.h */,
A7E9B74F12D37EC400DA6239 /* memeuclidean.cpp */,
A7E9B75012D37EC400DA6239 /* memeuclidean.h */,
A7E9B75112D37EC400DA6239 /* mempearson.cpp */,
A7E9B75212D37EC400DA6239 /* mempearson.h */,
A7E9B76D12D37EC400DA6239 /* npshannon.cpp */,
A7E9B76E12D37EC400DA6239 /* npshannon.h */,
A7E9B76F12D37EC400DA6239 /* nseqs.h */,
A7E9B77112D37EC400DA6239 /* odum.cpp */,
A7E9B77212D37EC400DA6239 /* odum.h */,
A7E9B7F812D37EC400DA6239 /* sharedjclass.cpp */,
A7E9B7F912D37EC400DA6239 /* sharedjclass.h */,
A7E9B7FA12D37EC400DA6239 /* sharedjest.cpp */,
A7E9B7FB12D37EC400DA6239 /* sharedjest.h */,
A7222D711856276C0055A993 /* sharedjsd.h */,
A7222D721856277C0055A993 /* sharedjsd.cpp */,
A7E9B7FC12D37EC400DA6239 /* sharedkstest.cpp */,
A7E9B7FD12D37EC400DA6239 /* sharedkstest.h */,
A7E9B7FE12D37EC400DA6239 /* sharedkulczynski.cpp */,
A7E9B7FF12D37EC400DA6239 /* sharedkulczynski.h */,
A7E9B80012D37EC400DA6239 /* sharedkulczynskicody.cpp */,
A7E9B80112D37EC400DA6239 /* sharedkulczynskicody.h */,
A7E9B80212D37EC400DA6239 /* sharedlennon.cpp */,
A7E9B80312D37EC400DA6239 /* sharedlennon.h */,
A7E9B80612D37EC400DA6239 /* sharedmarczewski.cpp */,
A7E9B80712D37EC400DA6239 /* sharedmarczewski.h */,
A7E9B80812D37EC400DA6239 /* sharedmorisitahorn.cpp */,
A7E9B80912D37EC400DA6239 /* sharedmorisitahorn.h */,
A7E9B80A12D37EC400DA6239 /* sharednseqs.h */,
A7E9B80B12D37EC400DA6239 /* sharedochiai.cpp */,
A7E9B80C12D37EC400DA6239 /* sharedochiai.h */,
48705AC119BE32C50075E977 /* sharedrjsd.cpp */,
48705AC219BE32C50075E977 /* sharedrjsd.h */,
A7E9B81512D37EC400DA6239 /* sharedsobs.cpp */,
A7E9B81612D37EC400DA6239 /* sharedsobs.h */,
A7E9B81712D37EC400DA6239 /* sharedsobscollectsummary.cpp */,
A7E9B81812D37EC400DA6239 /* sharedsobscollectsummary.h */,
A7E9B81912D37EC400DA6239 /* sharedsorabund.cpp */,
A7E9B81A12D37EC400DA6239 /* sharedsorabund.h */,
A7E9B81B12D37EC400DA6239 /* sharedsorclass.cpp */,
A7E9B81C12D37EC400DA6239 /* sharedsorclass.h */,
A7E9B81D12D37EC400DA6239 /* sharedsorest.cpp */,
A7E9B81E12D37EC400DA6239 /* sharedsorest.h */,
A7E9B81F12D37EC400DA6239 /* sharedthetan.cpp */,
A7E9B82012D37EC400DA6239 /* sharedthetan.h */,
A7E9B82112D37EC400DA6239 /* sharedthetayc.cpp */,
A7E9B82212D37EC400DA6239 /* sharedthetayc.h */,
A7E9B82512D37EC400DA6239 /* shen.cpp */,
A7E9B82612D37EC400DA6239 /* shen.h */,
A7E9B82912D37EC400DA6239 /* simpson.cpp */,
A7E9B82A12D37EC400DA6239 /* simpson.h */,
A7E9B82B12D37EC400DA6239 /* simpsoneven.cpp */,
A7E9B82C12D37EC400DA6239 /* simpsoneven.h */,
A7E9B83212D37EC400DA6239 /* smithwilson.cpp */,
A7E9B83312D37EC400DA6239 /* smithwilson.h */,
A7E9B83412D37EC400DA6239 /* sobs.h */,
A7E9B83512D37EC400DA6239 /* soergel.cpp */,
A7E9B83612D37EC400DA6239 /* soergel.h */,
A7E9B83712D37EC400DA6239 /* solow.cpp */,
A7E9B83812D37EC400DA6239 /* solow.h */,
A7E9B83B12D37EC400DA6239 /* spearman.cpp */,
A7E9B83C12D37EC400DA6239 /* spearman.h */,
A7E9B83D12D37EC400DA6239 /* speciesprofile.cpp */,
A7E9B83E12D37EC400DA6239 /* speciesprofile.h */,
A7E9B84512D37EC400DA6239 /* structchi2.cpp */,
A7E9B84612D37EC400DA6239 /* structchi2.h */,
A7E9B84712D37EC400DA6239 /* structchord.cpp */,
A7E9B84812D37EC400DA6239 /* structchord.h */,
A7E9B84912D37EC400DA6239 /* structeuclidean.cpp */,
A7E9B84A12D37EC400DA6239 /* structeuclidean.h */,
A7E9B84B12D37EC400DA6239 /* structkulczynski.cpp */,
A7E9B84C12D37EC400DA6239 /* structkulczynski.h */,
A7E9B84D12D37EC400DA6239 /* structpearson.cpp */,
A7E9B84E12D37EC400DA6239 /* structpearson.h */,
A7E9B87212D37EC400DA6239 /* uvest.cpp */,
A7E9B87312D37EC400DA6239 /* uvest.h */,
A7E9B87F12D37EC400DA6239 /* whittaker.cpp */,
A7E9B88012D37EC400DA6239 /* whittaker.h */,
);
name = otucalcs;
sourceTree = SOURCE_ROOT;
};
48E544671E9D14C500FF6AB8 /* distcalcs */ = {
isa = PBXGroup;
children = (
A7E9B6D512D37EC400DA6239 /* eachgapdist.h */,
481E40E2244F6A050059C925 /* eachgapdist.cpp */,
A7E9B6D612D37EC400DA6239 /* eachgapignore.h */,
481E40DE244F619D0059C925 /* eachgapignore.cpp */,
A7E9B72A12D37EC400DA6239 /* ignoregaps.h */,
481E40DC244F52460059C925 /* ignoregaps.cpp */,
F4A866CA265EBD270010479A /* jtt.hpp */,
F4A86711268F5CCE0010479A /* kimura.cpp */,
F4A86712268F5CCE0010479A /* kimura.hpp */,
F41A1B8F261257DE00144985 /* kmerdist.cpp */,
F41A1B90261257DE00144985 /* kmerdist.hpp */,
A7E9B77312D37EC400DA6239 /* onegapdist.h */,
48998B68242E785100DBD0A9 /* onegapdist.cpp */,
A7E9B77412D37EC400DA6239 /* onegapignore.h */,
481E40DA244DFF5A0059C925 /* onegapignore.cpp */,
F4A86707268E3AFA0010479A /* pam.hpp */,
F4A86700268B71A80010479A /* pmb.hpp */,
);
name = distcalcs;
sourceTree = "<group>";
};
48E544681E9D175100FF6AB8 /* unifraccalcs */ = {
isa = PBXGroup;
children = (
A7E9B78412D37EC400DA6239 /* parsimony.h */,
A7E9B78312D37EC400DA6239 /* parsimony.cpp */,
A7E9B87112D37EC400DA6239 /* unweighted.h */,
A7E9B87012D37EC400DA6239 /* unweighted.cpp */,
A7E9B87D12D37EC400DA6239 /* weighted.h */,
A7E9B87C12D37EC400DA6239 /* weighted.cpp */,
);
name = unifraccalcs;
sourceTree = "<group>";
};
48E544691E9D17E000FF6AB8 /* clearcutcalcs */ = {
isa = PBXGroup;
children = (
A7E9B6C012D37EC400DA6239 /* dayhoff.h */,
A7E9B79912D37EC400DA6239 /* prng.cpp */,
A7E9B79A12D37EC400DA6239 /* prng.h */,
);
name = clearcutcalcs;
sourceTree = "<group>";
};
48ED1E76235E1A3B003E66F7 /* engines */ = {
isa = PBXGroup;
children = (
A7E9B6DB12D37EC400DA6239 /* engine.hpp */,
48ED1E7F235E1D59003E66F7 /* batchengine.cpp */,
48ED1E80235E1D59003E66F7 /* batchengine.hpp */,
48ED1E7B235E1BB4003E66F7 /* interactengine.cpp */,
48ED1E7C235E1BB4003E66F7 /* interactengine.hpp */,
48ED1E77235E1ACA003E66F7 /* scriptengine.cpp */,
48ED1E78235E1ACA003E66F7 /* scriptengine.hpp */,
);
name = engines;
path = source/engines;
sourceTree = SOURCE_ROOT;
};
48F06CCA1D74BC6F004A45DD /* testclassifier */ = {
isa = PBXGroup;
children = (
48F06CCB1D74BEC4004A45DD /* testphylotree.cpp */,
48F06CCC1D74BEC4004A45DD /* testphylotree.hpp */,
);
name = testclassifier;
path = TestMothur;
sourceTree = SOURCE_ROOT;
};
7B17437A17AF6F02004C161B /* svm */ = {
isa = PBXGroup;
children = (
7B21820117AD77BD00286E6A /* svm.cpp */,
7B21820217AD77BD00286E6A /* svm.hpp */,
);
name = svm;
path = source/svm;
sourceTree = SOURCE_ROOT;
};
A7D395C1184FA34300A350D7 /* communitytype */ = {
isa = PBXGroup;
children = (
A7132EAE184E76EB00AAA402 /* communitytype.h */,
A7132EB2184E792700AAA402 /* communitytype.cpp */,
A7D395C2184FA39300A350D7 /* kmeans.h */,
A7D395C3184FA3A200A350D7 /* kmeans.cpp */,
A7B093BE18579EF600843CD1 /* pam.h */,
A7B093BF18579F0400843CD1 /* pam.cpp */,
A7548FAF171440ED00B1F05A /* qFinderDMM.h */,
A7548FAE171440EC00B1F05A /* qFinderDMM.cpp */,
);
name = communitytype;
path = source/communitytype;
sourceTree = SOURCE_ROOT;
};
A7E9BA3812D3956100DA6239 /* commands */ = {
isa = PBXGroup;
children = (
A7E9B6AE12D37EC400DA6239 /* command.hpp */,
219C1DE11552C508004209F9 /* newcommandtemplate.h */,
219C1DDF1552C4BD004209F9 /* newcommandtemplate.cpp */,
A7E9B65212D37EC300DA6239 /* aligncommand.h */,
A7E9B65112D37EC300DA6239 /* aligncommand.cpp */,
A7E9B7D412D37EC400DA6239 /* aligncheckcommand.h */,
A7E9B7D312D37EC400DA6239 /* aligncheckcommand.cpp */,
F44268EC27BD52D50000C15D /* alignmusclecommand.cpp */,
F44268ED27BD52D50000C15D /* alignmusclecommand.hpp */,
A7A61F2B130062E000E05B6B /* amovacommand.h */,
A7A61F2C130062E000E05B6B /* amovacommand.cpp */,
A71CB15F130B04A2001E7287 /* anosimcommand.h */,
A71CB15E130B04A2001E7287 /* anosimcommand.cpp */,
A7E9B66112D37EC300DA6239 /* binsequencecommand.h */,
A7E9B66012D37EC300DA6239 /* binsequencecommand.cpp */,
48C728781B728D6B00D40830 /* biominfocommand.h */,
48C728771B728D6B00D40830 /* biominfocommand.cpp */,
A7E9B67B12D37EC400DA6239 /* chimerabellerophoncommand.h */,
A7E9B67A12D37EC400DA6239 /* chimerabellerophoncommand.cpp */,
A7E9B67D12D37EC400DA6239 /* chimeraccodecommand.h */,
A7E9B67C12D37EC400DA6239 /* chimeraccodecommand.cpp */,
A7E9B67F12D37EC400DA6239 /* chimeracheckcommand.h */,
A7E9B67E12D37EC400DA6239 /* chimeracheckcommand.cpp */,
A7BF2230145879B2000AD524 /* chimeraperseuscommand.h */,
A7BF2231145879B2000AD524 /* chimeraperseuscommand.cpp */,
A7E9B68312D37EC400DA6239 /* chimerapintailcommand.h */,
A7E9B68212D37EC400DA6239 /* chimerapintailcommand.cpp */,
A7E9B68B12D37EC400DA6239 /* chimeraslayercommand.h */,
A7E9B68A12D37EC400DA6239 /* chimeraslayercommand.cpp */,
A74D36B6137DAFAA00332B0C /* chimerauchimecommand.h */,
A74D36B7137DAFAA00332B0C /* chimerauchimecommand.cpp */,
48EDB76A1D1320DD00F76E93 /* chimeravsearchcommand.cpp */,
48EDB76B1D1320DD00F76E93 /* chimeravsearchcommand.h */,
A7E9B68D12D37EC400DA6239 /* chopseqscommand.h */,
A7E9B68C12D37EC400DA6239 /* chopseqscommand.cpp */,
A7E9B69112D37EC400DA6239 /* classifyotucommand.h */,
A7E9B69012D37EC400DA6239 /* classifyotucommand.cpp */,
A7E9B69312D37EC400DA6239 /* classifyseqscommand.h */,
A7E9B69212D37EC400DA6239 /* classifyseqscommand.cpp */,
7B2181FF17AD777B00286E6A /* classifysvmsharedcommand.h */,
7B2181FE17AD777B00286E6A /* classifysvmsharedcommand.cpp */,
A7EEB0F714F29C1B00344B83 /* classifytreecommand.h */,
A7EEB0F414F29BFD00344B83 /* classifytreecommand.cpp */,
A7E9B69712D37EC400DA6239 /* clearcutcommand.h */,
A7E9B69612D37EC400DA6239 /* clearcutcommand.cpp */,
A7E9B69D12D37EC400DA6239 /* clustercommand.h */,
A7E9B69C12D37EC400DA6239 /* clustercommand.cpp */,
A7E9B69F12D37EC400DA6239 /* clusterdoturcommand.h */,
A7E9B69E12D37EC400DA6239 /* clusterdoturcommand.cpp */,
48B01D2720163594006BE140 /* clusterfitcommand.cpp */,
48B01D2820163594006BE140 /* clusterfitcommand.hpp */,
A7E9B6A112D37EC400DA6239 /* clusterfragmentscommand.h */,
A7E9B6A012D37EC400DA6239 /* clusterfragmentscommand.cpp */,
A7E9B6A312D37EC400DA6239 /* clustersplitcommand.h */,
A7E9B6A212D37EC400DA6239 /* clustersplitcommand.cpp */,
A7E9B6A912D37EC400DA6239 /* collectcommand.h */,
A7E9B6A812D37EC400DA6239 /* collectcommand.cpp */,
A7E9B6AD12D37EC400DA6239 /* collectsharedcommand.h */,
A7E9B6AC12D37EC400DA6239 /* collectsharedcommand.cpp */,
A7E9B6B812D37EC400DA6239 /* consensusseqscommand.h */,
A7E9B6B712D37EC400DA6239 /* consensusseqscommand.cpp */,
A7C3DC0A14FE457500FE1924 /* cooccurrencecommand.h */,
A7C3DC0914FE457500FE1924 /* cooccurrencecommand.cpp */,
A7E9B6BA12D37EC400DA6239 /* corraxescommand.h */,
A7E9B6B912D37EC400DA6239 /* corraxescommand.cpp */,
A795840B13F13CD900F201D5 /* countgroupscommand.h */,
A795840C13F13CD900F201D5 /* countgroupscommand.cpp */,
A7730EFD13967241007433A3 /* countseqscommand.h */,
A7730EFE13967241007433A3 /* countseqscommand.cpp */,
A77EBD2C1523707F00ED407C /* createdatabasecommand.h */,
A77EBD2E1523709100ED407C /* createdatabasecommand.cpp */,
A7E9B6C612D37EC400DA6239 /* degapseqscommand.h */,
A7E9B6C512D37EC400DA6239 /* degapseqscommand.cpp */,
A7E9B6C812D37EC400DA6239 /* deuniqueseqscommand.h */,
A7E9B6C712D37EC400DA6239 /* deuniqueseqscommand.cpp */,
A77A221D139001B600B0BE70 /* deuniquetreecommand.h */,
A77A221E139001B600B0BE70 /* deuniquetreecommand.cpp */,
A7E9B6CC12D37EC400DA6239 /* distancecommand.h */,
A7E9B6CB12D37EC400DA6239 /* distancecommand.cpp */,
A7E9B74A12D37EC400DA6239 /* distsharedcommand.h */,
A7E9B74912D37EC400DA6239 /* distsharedcommand.cpp */,
F4103A6F25A4C4D2001ED741 /* diversityestimatorcommand.hpp */,
484976E52256799100F3A291 /* diversityestimatorcommand.cpp */,
A7E9B78012D37EC400DA6239 /* fastaqinfocommand.h */,
A7E9B77F12D37EC400DA6239 /* fastaqinfocommand.cpp */,
A7E9B6E412D37EC400DA6239 /* filterseqscommand.h */,
A7E9B6E312D37EC400DA6239 /* filterseqscommand.cpp */,
A79EEF8816971D640006DEC1 /* filtersharedcommand.h */,
A79EEF8516971D4A0006DEC1 /* filtersharedcommand.cpp */,
219C1DE51559BCF2004209F9 /* getcoremicrobiomecommand.h */,
219C1DE31559BCCD004209F9 /* getcoremicrobiomecommand.cpp */,
A7FE7C3E1330EA1000F7B327 /* getcurrentcommand.h */,
A7FE7C3F1330EA1000F7B327 /* getcurrentcommand.cpp */,
A7128B1A16B7001200723BE4 /* getdistscommand.h */,
A7128B1C16B7002600723BE4 /* getdistscommand.cpp */,
A7E9B6F312D37EC400DA6239 /* getgroupcommand.h */,
A7E9B6F212D37EC400DA6239 /* getgroupcommand.cpp */,
A7E9B6F512D37EC400DA6239 /* getgroupscommand.h */,
A7E9B6F412D37EC400DA6239 /* getgroupscommand.cpp */,
A7E9B6F712D37EC400DA6239 /* getlabelcommand.h */,
A7E9B6F612D37EC400DA6239 /* getlabelcommand.cpp */,
A7E9B6F912D37EC400DA6239 /* getlineagecommand.h */,
A7E9B6F812D37EC400DA6239 /* getlineagecommand.cpp */,
A7E9B6FB12D37EC400DA6239 /* getlistcountcommand.h */,
A7E9B6FA12D37EC400DA6239 /* getlistcountcommand.cpp */,
A7548FAB17142EA500B1F05A /* getmetacommunitycommand.h */,
A7548FAC17142EBC00B1F05A /* getmetacommunitycommand.cpp */,
48705ABB19BE32C50075E977 /* getmimarkspackagecommand.cpp */,
48705ABC19BE32C50075E977 /* getmimarkspackagecommand.h */,
A7E9B6FF12D37EC400DA6239 /* getoturepcommand.h */,
A7E9B6FE12D37EC400DA6239 /* getoturepcommand.cpp */,
A70056E8156A93E300924A2D /* getotuscommand.h */,
A70056E5156A93D000924A2D /* getotuscommand.cpp */,
A7E9B70312D37EC400DA6239 /* getrabundcommand.h */,
A7E9B70212D37EC400DA6239 /* getrabundcommand.cpp */,
A7E9B70512D37EC400DA6239 /* getrelabundcommand.h */,
A7E9B70412D37EC400DA6239 /* getrelabundcommand.cpp */,
A7E9B70712D37EC400DA6239 /* getsabundcommand.h */,
A7E9B70612D37EC400DA6239 /* getsabundcommand.cpp */,
A7E9B70912D37EC400DA6239 /* getseqscommand.h */,
A7E9B70812D37EC400DA6239 /* getseqscommand.cpp */,
A7E9B70B12D37EC400DA6239 /* getsharedotucommand.h */,
A7E9B70A12D37EC400DA6239 /* getsharedotucommand.cpp */,
A7E9B71F12D37EC400DA6239 /* heatmapcommand.h */,
A7E9B71E12D37EC400DA6239 /* heatmapcommand.cpp */,
A7E9B72312D37EC400DA6239 /* heatmapsimcommand.h */,
A7E9B72212D37EC400DA6239 /* heatmapsimcommand.cpp */,
A7E9B72912D37EC400DA6239 /* helpcommand.h */,
A7E9B72812D37EC400DA6239 /* helpcommand.cpp */,
A75790571301749D00A30DAB /* homovacommand.h */,
A75790581301749D00A30DAB /* homovacommand.cpp */,
A7E9B72C12D37EC400DA6239 /* indicatorcommand.h */,
A7E9B72B12D37EC400DA6239 /* indicatorcommand.cpp */,
A7496D2D167B531B00CC7D7C /* kruskalwalliscommand.h */,
A7496D2C167B531B00CC7D7C /* kruskalwalliscommand.cpp */,
A7190B211768E0DF00A9AFA6 /* lefsecommand.h */,
A7190B201768E0DF00A9AFA6 /* lefsecommand.cpp */,
A7E9B73C12D37EC400DA6239 /* libshuffcommand.h */,
A7E9B73B12D37EC400DA6239 /* libshuffcommand.cpp */,
A7A0671C156294810095C8C5 /* listotuscommand.h */,
A7A067191562946F0095C8C5 /* listotuscommand.cpp */,
A7E9B73E12D37EC400DA6239 /* listseqscommand.h */,
A7E9B73D12D37EC400DA6239 /* listseqscommand.cpp */,
A7FA10001302E096003860FE /* mantelcommand.h */,
A7FA10011302E096003860FE /* mantelcommand.cpp */,
A724D2B4153C8600000A826F /* makebiomcommand.h */,
A724D2B6153C8628000A826F /* makebiomcommand.cpp */,
A7A0671D1562AC230095C8C5 /* makecontigscommand.h */,
A7A0671E1562AC3E0095C8C5 /* makecontigscommand.cpp */,
A799F5B71309A3E000AEEFA0 /* makefastqcommand.h */,
A799F5B81309A3E000AEEFA0 /* makefastqcommand.cpp */,
48DB37B21B3B27E000C372A4 /* makefilecommand.h */,
48DB37B11B3B27E000C372A4 /* makefilecommand.cpp */,
A7E9B74412D37EC400DA6239 /* makegroupcommand.h */,
A7E9B74312D37EC400DA6239 /* makegroupcommand.cpp */,
48F1C16423D606050034DAAF /* makeclrcommand.cpp */,
48F1C16523D606050034DAAF /* makeclrcommand.hpp */,
A741744B175CD9B1007DF49B /* makelefsecommand.h */,
A741744A175CD9B1007DF49B /* makelefsecommand.cpp */,
A7E6F69C17427CF2006775E2 /* makelookupcommand.h */,
A7E6F69D17427D06006775E2 /* makelookupcommand.cpp */,
A7E9B7F312D37EC400DA6239 /* makesharedcommand.h */,
A7E9B7F212D37EC400DA6239 /* makesharedcommand.cpp */,
48910D411D5243E500F60EDB /* mergecountcommand.cpp */,
48910D421D5243E500F60EDB /* mergecountcommand.hpp */,
A7E9B75412D37EC400DA6239 /* mergefilecommand.h */,
A7E9B75312D37EC400DA6239 /* mergefilecommand.cpp */,
A71FE12B12EDF72400963CA7 /* mergegroupscommand.cpp */,
A71FE12A12EDF72400963CA7 /* mergegroupscommand.h */,
48CF76EE21BEBDD300B2FB5C /* mergeotuscommand.cpp */,
48CF76EF21BEBDD300B2FB5C /* mergeotuscommand.hpp */,
48705AC019BE32C50075E977 /* mergesfffilecommand.h */,
48705ABF19BE32C50075E977 /* mergesfffilecommand.cpp */,
A799314816CBD0BC0017E888 /* mergetaxsummarycommand.h */,
A799314A16CBD0CD0017E888 /* mergetaxsummarycommand.cpp */,
A7E9B75812D37EC400DA6239 /* metastatscommand.h */,
A7E9B75712D37EC400DA6239 /* metastatscommand.cpp */,
A7E9B75A12D37EC400DA6239 /* mgclustercommand.h */,
A7E9B75912D37EC400DA6239 /* mgclustercommand.cpp */,
487C5A851AB88B93002AF48A /* mimarksattributescommand.cpp */,
487C5A861AB88B93002AF48A /* mimarksattributescommand.h */,
A7E9B76A12D37EC400DA6239 /* nocommands.h */,
A7E9B76912D37EC400DA6239 /* nocommands.cpp */,
A7E9B76C12D37EC400DA6239 /* normalizesharedcommand.h */,
A7E9B76B12D37EC400DA6239 /* normalizesharedcommand.cpp */,
A713EBEB12DC7C5E000092AC /* nmdscommand.h */,
A713EBEC12DC7C5E000092AC /* nmdscommand.cpp */,
A7A3C8C814D041AD00B1BFBE /* otuassociationcommand.h */,
A7A3C8C714D041AD00B1BFBE /* otuassociationcommand.cpp */,
A7E9B77A12D37EC400DA6239 /* otuhierarchycommand.h */,
A7E9B77912D37EC400DA6239 /* otuhierarchycommand.cpp */,
A7E9B77E12D37EC400DA6239 /* pairwiseseqscommand.h */,
A7E9B77D12D37EC400DA6239 /* pairwiseseqscommand.cpp */,
A7E9B78612D37EC400DA6239 /* parsimonycommand.h */,
A7E9B78512D37EC400DA6239 /* parsimonycommand.cpp */,
A7FC486512D795D60055BC5C /* pcacommand.h */,
A7FC486612D795D60055BC5C /* pcacommand.cpp */,
A7E9B78812D37EC400DA6239 /* pcoacommand.h */,
A7E9B78712D37EC400DA6239 /* pcoacommand.cpp */,
A76CDD7F1510F09A004C8458 /* pcrseqscommand.h */,
481623E11B56A2DB004C60B7 /* pcrseqscommand.cpp */,
A7E9B78C12D37EC400DA6239 /* phylodiversitycommand.h */,
A7E9B78B12D37EC400DA6239 /* phylodiversitycommand.cpp */,
A7E9B79212D37EC400DA6239 /* phylotypecommand.h */,
A7E9B79112D37EC400DA6239 /* phylotypecommand.cpp */,
A7E9B79812D37EC400DA6239 /* preclustercommand.h */,
A7E9B79712D37EC400DA6239 /* preclustercommand.cpp */,
A74C06E616A9C097008390A3 /* primerdesigncommand.h */,
A74C06E816A9C0A8008390A3 /* primerdesigncommand.cpp */,
A7E9B7A212D37EC400DA6239 /* quitcommand.h */,
A7E9B7A112D37EC400DA6239 /* quitcommand.cpp */,
A7E9B7AC12D37EC400DA6239 /* rarefactcommand.h */,
A7E9B7AB12D37EC400DA6239 /* rarefactcommand.cpp */,
A7E9B7AF12D37EC400DA6239 /* rarefactsharedcommand.h */,
A7E9B7AE12D37EC400DA6239 /* rarefactsharedcommand.cpp */,
A7B0231716B8245D006BA09E /* removedistscommand.h */,
A7B0231416B8244B006BA09E /* removedistscommand.cpp */,
A7E9B7C412D37EC400DA6239 /* removegroupscommand.h */,
A7E9B7C312D37EC400DA6239 /* removegroupscommand.cpp */,
A7E9B7C612D37EC400DA6239 /* removelineagecommand.h */,
A7E9B7C512D37EC400DA6239 /* removelineagecommand.cpp */,
A70056E9156AB6D400924A2D /* removeotuscommand.h */,
A70056EA156AB6E500924A2D /* removeotuscommand.cpp */,
A727864212E9E28C00F86ABA /* removerarecommand.h */,
A727864312E9E28C00F86ABA /* removerarecommand.cpp */,
A7E9B7CA12D37EC400DA6239 /* removeseqscommand.h */,
A7E9B7C912D37EC400DA6239 /* removeseqscommand.cpp */,
488841631CC6C34900C5E972 /* renamefilecommand.cpp */,
488841641CC6C34900C5E972 /* renamefilecommand.h */,
A7CFA42F1755400500D9ED4D /* renameseqscommand.h */,
A7CFA4301755401800D9ED4D /* renameseqscommand.cpp */,
A7E9B7CE12D37EC400DA6239 /* reversecommand.h */,
A7E9B7CD12D37EC400DA6239 /* reversecommand.cpp */,
A7E9B7D212D37EC400DA6239 /* screenseqscommand.h */,
A7E9B7D112D37EC400DA6239 /* screenseqscommand.cpp */,
A7E9B7D612D37EC400DA6239 /* sensspeccommand.h */,
A7E9B7D512D37EC400DA6239 /* sensspeccommand.cpp */,
A7E9B7D812D37EC400DA6239 /* seqerrorcommand.h */,
A7E9B7D712D37EC400DA6239 /* seqerrorcommand.cpp */,
A7E9B7DA12D37EC400DA6239 /* seqsummarycommand.h */,
A7E9B7D912D37EC400DA6239 /* seqsummarycommand.cpp */,
A7FE7E6B13311EA400F7B327 /* setcurrentcommand.h */,
A7FE7E6C13311EA400F7B327 /* setcurrentcommand.cpp */,
A7E9B7E012D37EC400DA6239 /* setdircommand.h */,
A7E9B7DF12D37EC400DA6239 /* setdircommand.cpp */,
A7E9B7E212D37EC400DA6239 /* setlogfilecommand.h */,
A7E9B7E112D37EC400DA6239 /* setlogfilecommand.cpp */,
481FB5291AC19F8B0076CFF3 /* setseedcommand.h */,
481FB5281AC19F8B0076CFF3 /* setseedcommand.cpp */,
A7E9B7E412D37EC400DA6239 /* sffinfocommand.h */,
A7E9B7E312D37EC400DA6239 /* sffinfocommand.cpp */,
A7C7DAB615DA75760059B0CF /* sffmultiplecommand.h */,
A7C7DAB815DA758B0059B0CF /* sffmultiplecommand.cpp */,
A7E9B82812D37EC400DA6239 /* shhhercommand.h */,
A7E9B82712D37EC400DA6239 /* shhhercommand.cpp */,
A774101214695AF60098E6AC /* shhhseqscommand.h */,
A774101314695AF60098E6AC /* shhhseqscommand.cpp */,
A7A32DAC14DC43D10001D2E5 /* sortseqscommand.h */,
A7A32DA914DC43B00001D2E5 /* sortseqscommand.cpp */,
A77B7183173D222F002163C2 /* sparcccommand.h */,
A77B7184173D2240002163C2 /* sparcccommand.cpp */,
A7E9B84012D37EC400DA6239 /* splitabundcommand.h */,
A7E9B83F12D37EC400DA6239 /* splitabundcommand.cpp */,
A7E9B84212D37EC400DA6239 /* splitgroupscommand.h */,
A7E9B84112D37EC400DA6239 /* splitgroupscommand.cpp */,
A747EC6F181EA0E500345732 /* sracommand.h */,
A747EC70181EA0F900345732 /* sracommand.cpp */,
48ED1E8423689DE8003E66F7 /* srainfocommand.hpp */,
48ED1E8323689DE8003E66F7 /* srainfocommand.cpp */,
A7E9B85012D37EC400DA6239 /* subsamplecommand.h */,
A7E9B84F12D37EC400DA6239 /* subsamplecommand.cpp */,
A7E9B85812D37EC400DA6239 /* summarycommand.h */,
A7E9B85712D37EC400DA6239 /* summarycommand.cpp */,
A754149514840CF7005850D1 /* summaryqualcommand.h */,
A754149614840CF7005850D1 /* summaryqualcommand.cpp */,
A7E9B85A12D37EC400DA6239 /* summarysharedcommand.h */,
A7E9B85912D37EC400DA6239 /* summarysharedcommand.cpp */,
A7FFB556142CA02C004884F2 /* summarytaxcommand.h */,
A7FFB557142CA02C004884F2 /* summarytaxcommand.cpp */,
A7E9B85C12D37EC400DA6239 /* systemcommand.h */,
A7E9B85B12D37EC400DA6239 /* systemcommand.cpp */,
F4B4B0DA27396EF7003B2133 /* translateseqscommand.cpp */,
F4B4B0DB27396EF7003B2133 /* translateseqscommand.hpp */,
A7E9B86312D37EC400DA6239 /* treesharedcommand.h */,
A7E9B86212D37EC400DA6239 /* treesharedcommand.cpp */,
A7E9B86912D37EC400DA6239 /* trimflowscommand.h */,
A7E9B86812D37EC400DA6239 /* trimflowscommand.cpp */,
A7E9B86B12D37EC400DA6239 /* trimseqscommand.h */,
A7E9B86A12D37EC400DA6239 /* trimseqscommand.cpp */,
A7E9B86D12D37EC400DA6239 /* unifracunweightedcommand.h */,
A7E9B86C12D37EC400DA6239 /* unifracunweightedcommand.cpp */,
A7E9B86F12D37EC400DA6239 /* unifracweightedcommand.h */,
A7E9B86E12D37EC400DA6239 /* unifracweightedcommand.cpp */,
A7E9B6C412D37EC400DA6239 /* uniqueseqscommand.h */,
A7E9B6C312D37EC400DA6239 /* uniqueseqscommand.cpp */,
A7E9B87B12D37EC400DA6239 /* venncommand.h */,
A7E9B87A12D37EC400DA6239 /* venncommand.cpp */,
);
name = commands;
path = source/commands;
sourceTree = SOURCE_ROOT;
};
A7E9BA3F12D395F700DA6239 /* calculators */ = {
isa = PBXGroup;
children = (
F40859B0280F3CB200F19B1A /* README.txt */,
A7E9B66F12D37EC400DA6239 /* calculator.h */,
481E40E0244F62980059C925 /* calculator.cpp */,
A7E9B6E212D37EC400DA6239 /* filters.h */,
A7E9B86112D37EC400DA6239 /* treecalculator.h */,
4815BECB229717E100677EE2 /* diversitycalc.h */,
484976DC22552BEA00F3A291 /* diversitycalcs */,
48E544691E9D17E000FF6AB8 /* clearcutcalcs */,
48E544671E9D14C500FF6AB8 /* distcalcs */,
48E5443E1E9C28CC00FF6AB8 /* clustercalcs */,
48E544661E9D12CA00FF6AB8 /* otucalcs */,
48E544681E9D175100FF6AB8 /* unifraccalcs */,
);
name = calculators;
path = source/calculators;
sourceTree = SOURCE_ROOT;
};
A7E9BA4212D3960D00DA6239 /* containers */ = {
isa = PBXGroup;
children = (
A7E9B65312D37EC300DA6239 /* alignment.cpp */,
A7E9B65412D37EC300DA6239 /* alignment.hpp */,
A7E9B65512D37EC300DA6239 /* alignmentcell.cpp */,
A7E9B65612D37EC300DA6239 /* alignmentcell.hpp */,
A7E9B65712D37EC300DA6239 /* alignmentdb.cpp */,
A7E9B65812D37EC300DA6239 /* alignmentdb.h */,
A7E9B76312D37EC400DA6239 /* alignreport.cpp */,
A7E9B76412D37EC400DA6239 /* alignreport.hpp */,
F4A866BE265BE7EC0010479A /* aminoacid.hpp */,
F4A866BD265BE7EC0010479A /* aminoacid.cpp */,
48A0B8EA2547282600726384 /* biom.cpp */,
48A0B8EB2547282600726384 /* biom.hpp */,
48A0B8EF25472C4500726384 /* biomhdf5.cpp */,
48A0B8F025472C4500726384 /* biomhdf5.hpp */,
48A0B8F425472C6500726384 /* biomsimple.cpp */,
48A0B8F525472C6500726384 /* biomsimple.hpp */,
48883FFB20C6D6C000CAF112 /* compare.h */,
F45A2E3B25A78B4D00994F76 /* contigsreport.hpp */,
F45A2E3C25A78B4D00994F76 /* contigsreport.cpp */,
A74D59A6159A1E3600043046 /* counttable.h */,
A74D59A3159A1E2000043046 /* counttable.cpp */,
A7E9B6BF12D37EC400DA6239 /* datavector.hpp */,
A77916E7176F7F7600EEFE18 /* designmap.h */,
A77916E6176F7F7600EEFE18 /* designmap.cpp */,
A7E9B6CE12D37EC400DA6239 /* distancedb.hpp */,
A7E9B6CD12D37EC400DA6239 /* distancedb.cpp */,
A7E9B6DE12D37EC400DA6239 /* fastamap.cpp */,
A7E9B6DF12D37EC400DA6239 /* fastamap.h */,
48C51DEE1A76B870004ECDF1 /* fastqread.h */,
48C51DEF1A76B888004ECDF1 /* fastqread.cpp */,
48BD4EB621F7724C008EA73D /* filefile.cpp */,
48BD4EB721F7724C008EA73D /* filefile.hpp */,
A7E9B6E812D37EC400DA6239 /* flowdata.h */,
A7E9B6E712D37EC400DA6239 /* flowdata.cpp */,
A7E9B6EE12D37EC400DA6239 /* fullmatrix.cpp */,
A7E9B6EF12D37EC400DA6239 /* fullmatrix.h */,
A7E9B71412D37EC400DA6239 /* groupmap.cpp */,
A7E9B71512D37EC400DA6239 /* groupmap.h */,
A7E9B73312D37EC400DA6239 /* kmer.cpp */,
A7E9B73412D37EC400DA6239 /* kmer.hpp */,
48C51DF21A793EFE004ECDF1 /* kmeralign.h */,
48C51DF11A793EFE004ECDF1 /* kmeralign.cpp */,
A7E9B73512D37EC400DA6239 /* kmerdb.cpp */,
A7E9B73612D37EC400DA6239 /* kmerdb.hpp */,
A7E9B73F12D37EC400DA6239 /* listvector.cpp */,
A7E9B74012D37EC400DA6239 /* listvector.hpp */,
A7E9B75F12D37EC400DA6239 /* nameassignment.cpp */,
A7E9B76012D37EC400DA6239 /* nameassignment.hpp */,
48705ABE19BE32C50075E977 /* oligos.h */,
48705ABD19BE32C50075E977 /* oligos.cpp */,
48FB99CA20A4AD7D00FF9F6E /* optiblastmatrix.cpp */,
48FB99CB20A4AD7D00FF9F6E /* optiblastmatrix.hpp */,
48FB99C720A48EF700FF9F6E /* optidata.cpp */,
48FB99C820A48EF700FF9F6E /* optidata.hpp */,
48910D491D58CBA300F60EDB /* optimatrix.cpp */,
48910D4A1D58CBA300F60EDB /* optimatrix.h */,
48FB99C4209B69FA00FF9F6E /* optirefmatrix.hpp */,
48FB99C3209B69FA00FF9F6E /* optirefmatrix.cpp */,
A7E9B77712D37EC400DA6239 /* ordervector.cpp */,
A7E9B77812D37EC400DA6239 /* ordervector.hpp */,
482AC3B72562B57600C9AF4A /* picrust.cpp */,
482AC3B82562B57600C9AF4A /* picrust.hpp */,
F4A866B6265BE7720010479A /* protein.hpp */,
F4A866B5265BE7720010479A /* protein.cpp */,
F4A866CF266912830010479A /* proteindb.cpp */,
F4A866D0266912830010479A /* proteindb.hpp */,
A7E9B79F12D37EC400DA6239 /* qualityscores.cpp */,
A7E9B7A012D37EC400DA6239 /* qualityscores.h */,
48BDDA771ECA3B8E00F0F6C0 /* rabundfloatvector.cpp */,
48BDDA781ECA3B8E00F0F6C0 /* rabundfloatvector.hpp */,
A7E9B7A312D37EC400DA6239 /* rabundvector.cpp */,
A7E9B7A412D37EC400DA6239 /* rabundvector.hpp */,
48E0230124BF488D00BFEA41 /* report.cpp */,
48E0230224BF488D00BFEA41 /* report.hpp */,
A7E9B7CF12D37EC400DA6239 /* sabundvector.cpp */,
A7E9B7D012D37EC400DA6239 /* sabundvector.hpp */,
A7E9B6BE12D37EC400DA6239 /* searchdatabase.hpp */,
A7E9B7DB12D37EC400DA6239 /* sequence.cpp */,
A7E9B7DC12D37EC400DA6239 /* sequence.hpp */,
A741FAD415D168A00067BCC5 /* sequencecountparser.h */,
A741FAD115D1688E0067BCC5 /* sequencecountparser.cpp */,
A7E9B7DD12D37EC400DA6239 /* sequencedb.cpp */,
A7E9B7DE12D37EC400DA6239 /* sequencedb.h */,
A7F9F5CD141A5E500032F693 /* sequenceparser.h */,
A7F9F5CE141A5E500032F693 /* sequenceparser.cpp */,
48A055312491577800D0F97F /* sffheader.cpp */,
48A055322491577800D0F97F /* sffheader.hpp */,
48A0552E2490066C00D0F97F /* sffread.cpp */,
48A0552F2490066C00D0F97F /* sffread.hpp */,
48F1C16C23D78F8D0034DAAF /* sharedclrvector.cpp */,
48F1C16D23D78F8D0034DAAF /* sharedclrvector.hpp */,
48F1C16823D78D7B0034DAAF /* sharedclrvectors.cpp */,
48F1C16923D78D7B0034DAAF /* sharedclrvectors.hpp */,
A7E9B80412D37EC400DA6239 /* sharedlistvector.cpp */,
A7E9B80512D37EC400DA6239 /* sharedlistvector.h */,
A7E9B80E12D37EC400DA6239 /* sharedordervector.h */,
A7E9B80D12D37EC400DA6239 /* sharedordervector.cpp */,
485B0E061F264F2E00CA5F57 /* sharedrabundvector.cpp */,
485B0E071F264F2E00CA5F57 /* sharedrabundvector.hpp */,
485B0E0C1F27C40500CA5F57 /* sharedrabundfloatvector.cpp */,
485B0E0D1F27C40500CA5F57 /* sharedrabundfloatvector.hpp */,
48BDDA741ECA067000F0F6C0 /* sharedrabundfloatvectors.hpp */,
48BDDA731ECA067000F0F6C0 /* sharedrabundfloatvectors.cpp */,
48BDDA6F1EC9D31400F0F6C0 /* sharedrabundvectors.hpp */,
48BDDA701EC9D31400F0F6C0 /* sharedrabundvectors.cpp */,
A7E9B83912D37EC400DA6239 /* sparsematrix.cpp */,
A7E9B83A12D37EC400DA6239 /* sparsematrix.hpp */,
A7E0243F15B4522000A5F046 /* sparsedistancematrix.h */,
A7E0243C15B4520A00A5F046 /* sparsedistancematrix.cpp */,
F4A866DA266946AB0010479A /* storagedatabase.hpp */,
A7E9B85112D37EC400DA6239 /* suffixdb.cpp */,
A7E9B85212D37EC400DA6239 /* suffixdb.hpp */,
A7E9B85312D37EC400DA6239 /* suffixnodes.cpp */,
A7E9B85412D37EC400DA6239 /* suffixnodes.hpp */,
A7E9B85512D37EC400DA6239 /* suffixtree.cpp */,
A7E9B85612D37EC400DA6239 /* suffixtree.hpp */,
488563D023CD00C4007B5659 /* taxonomy.hpp */,
488563CF23CD00C4007B5659 /* taxonomy.cpp */,
A7E9B85F12D37EC400DA6239 /* tree.cpp */,
A7E9B86012D37EC400DA6239 /* tree.h */,
A7E9B86412D37EC400DA6239 /* treemap.cpp */,
A7E9B86512D37EC400DA6239 /* treemap.h */,
A7E9B86612D37EC400DA6239 /* treenode.cpp */,
A7E9B86712D37EC400DA6239 /* treenode.h */,
);
name = containers;
path = source/datastructures;
sourceTree = SOURCE_ROOT;
};
A7E9BA4512D3965600DA6239 /* chimera */ = {
isa = PBXGroup;
children = (
F40859B12811AE6500F19B1A /* README.txt */,
A7E9B65C12D37EC300DA6239 /* bellerophon.cpp */,
A7E9B65D12D37EC300DA6239 /* bellerophon.h */,
A7E9B67412D37EC400DA6239 /* ccode.cpp */,
A7E9B67512D37EC400DA6239 /* ccode.h */,
A7E9B68012D37EC400DA6239 /* chimeracheckrdp.cpp */,
A7E9B68112D37EC400DA6239 /* chimeracheckrdp.h */,
A7E9B68412D37EC400DA6239 /* chimerarealigner.cpp */,
A7E9B68512D37EC400DA6239 /* chimerarealigner.h */,
A7E9B6C212D37EC400DA6239 /* decalc.h */,
A7E9B6C112D37EC400DA6239 /* decalc.cpp */,
A7E9B68812D37EC400DA6239 /* chimeraslayer.cpp */,
A7E9B68912D37EC400DA6239 /* chimeraslayer.h */,
A7E9B74612D37EC400DA6239 /* maligner.h */,
A7E9B74512D37EC400DA6239 /* maligner.cpp */,
A7E9B67912D37EC400DA6239 /* mothurchimera.h */,
A7E9B67812D37EC400DA6239 /* mothurchimera.cpp */,
A7BF221314587886000AD524 /* myPerseus.h */,
A7BF221214587886000AD524 /* myPerseus.cpp */,
A7E9B79312D37EC400DA6239 /* pintail.cpp */,
A7E9B79412D37EC400DA6239 /* pintail.h */,
A7E9B82E12D37EC400DA6239 /* slayer.cpp */,
A7E9B82F12D37EC400DA6239 /* slayer.h */,
);
name = chimera;
path = source/chimera;
sourceTree = SOURCE_ROOT;
};
A7E9BA4B12D3966900DA6239 /* classifier */ = {
isa = PBXGroup;
children = (
A721AB67161C570F009860A1 /* alignnode.h */,
A721AB66161C570F009860A1 /* alignnode.cpp */,
A721AB69161C570F009860A1 /* aligntree.h */,
A721AB68161C570F009860A1 /* aligntree.cpp */,
A7E9B65B12D37EC300DA6239 /* bayesian.h */,
A7E9B65A12D37EC300DA6239 /* bayesian.cpp */,
A7E9B68E12D37EC400DA6239 /* classify.cpp */,
A7E9B68F12D37EC400DA6239 /* classify.h */,
A721AB6E161C572A009860A1 /* kmernode.h */,
A721AB6D161C572A009860A1 /* kmernode.cpp */,
A721AB70161C572A009860A1 /* kmertree.h */,
A721AB6F161C572A009860A1 /* kmertree.cpp */,
A7E9B73812D37EC400DA6239 /* knn.h */,
A7E9B73712D37EC400DA6239 /* knn.cpp */,
A7E9B78D12D37EC400DA6239 /* phylosummary.cpp */,
A7E9B78E12D37EC400DA6239 /* phylosummary.h */,
A7E9B78F12D37EC400DA6239 /* phylotree.cpp */,
A7E9B79012D37EC400DA6239 /* phylotree.h */,
A7E9B85D12D37EC400DA6239 /* taxonomyequalizer.cpp */,
A7E9B85E12D37EC400DA6239 /* taxonomyequalizer.h */,
A721AB74161C573B009860A1 /* taxonomynode.h */,
A721AB73161C573B009860A1 /* taxonomynode.cpp */,
);
name = classifier;
path = source/classifier;
sourceTree = SOURCE_ROOT;
};
A7E9BA4F12D398D700DA6239 /* clearcut */ = {
isa = PBXGroup;
children = (
F40859AF280F2DDB00F19B1A /* README.txt */,
A7E9B69412D37EC400DA6239 /* clearcut.cpp */,
A7E9B69512D37EC400DA6239 /* clearcut.h */,
A7E9B6A412D37EC400DA6239 /* cmdargs.cpp */,
A7E9B6A512D37EC400DA6239 /* cmdargs.h */,
A7E9B6B312D37EC400DA6239 /* common.h */,
A7E9B6CF12D37EC400DA6239 /* distclearcut.cpp */,
A7E9B6D012D37EC400DA6239 /* distclearcut.h */,
A7E9B6D312D37EC400DA6239 /* dmat.cpp */,
A7E9B6D412D37EC400DA6239 /* dmat.h */,
A7E9B6DC12D37EC400DA6239 /* fasta.cpp */,
A7E9B6DD12D37EC400DA6239 /* fasta.h */,
A7E9B6FD12D37EC400DA6239 /* getopt_long.h */,
A7E9B6FC12D37EC400DA6239 /* getopt_long.cpp */,
);
name = clearcut;
path = source/clearcut;
sourceTree = SOURCE_ROOT;
};
A7E9BA5312D39A5E00DA6239 /* read */ = {
isa = PBXGroup;
children = (
A7E9B7B012D37EC400DA6239 /* readblast.cpp */,
A7E9B7B112D37EC400DA6239 /* readblast.h */,
A7E9B7B212D37EC400DA6239 /* readcluster.cpp */,
A7E9B7B312D37EC400DA6239 /* readcluster.h */,
A7E9B7B412D37EC400DA6239 /* readcolumn.cpp */,
A7E9B7B512D37EC400DA6239 /* readcolumn.h */,
A7E9B7B812D37EC400DA6239 /* readmatrix.hpp */,
A7E9B7BD12D37EC400DA6239 /* readphylip.cpp */,
A7E9B7BE12D37EC400DA6239 /* readphylip.h */,
A7E9B7BF12D37EC400DA6239 /* readtree.cpp */,
A7E9B7C012D37EC400DA6239 /* readtree.h */,
A713EBAA12DC7613000092AC /* readphylipvector.h */,
A713EBAB12DC7613000092AC /* readphylipvector.cpp */,
A7E9B84312D37EC400DA6239 /* splitmatrix.cpp */,
A7E9B84412D37EC400DA6239 /* splitmatrix.h */,
A7D755D71535F665009BF21A /* treereader.h */,
A7D755D91535F679009BF21A /* treereader.cpp */,
);
name = read;
path = source/read;
sourceTree = SOURCE_ROOT;
};
A7E9BA5612D39BD800DA6239 /* metastats */ = {
isa = PBXGroup;
children = (
A79234D513C74BF6002B08E2 /* mothurfisher.h */,
A79234D613C74BF6002B08E2 /* mothurfisher.cpp */,
A73DDC3613C4BF64006AAE38 /* mothurmetastats.h */,
A73DDC3713C4BF64006AAE38 /* mothurmetastats.cpp */,
);
name = metastats;
path = source/metastats;
sourceTree = SOURCE_ROOT;
};
F45A2E4F25BF229600994F76 /* mothur */ = {
isa = PBXGroup;
children = (
F45A2E5025BF229600994F76 /* main.cpp */,
);
path = mothur;
sourceTree = "<group>";
};
/* End PBXGroup section */
/* Begin PBXNativeTarget section */
481FB5181AC0A63E0076CFF3 /* TestMothur */ = {
isa = PBXNativeTarget;
buildConfigurationList = 481FB51F1AC0A63E0076CFF3 /* Build configuration list for PBXNativeTarget "TestMothur" */;
buildPhases = (
481FB5151AC0A63E0076CFF3 /* Sources */,
481FB5161AC0A63E0076CFF3 /* Frameworks */,
481FB5171AC0A63E0076CFF3 /* CopyFiles */,
);
buildRules = (
481FB6A11AC1BE060076CFF3 /* PBXBuildRule */,
);
dependencies = (
);
name = TestMothur;
productName = TestMothur;
productReference = 481FB5191AC0A63E0076CFF3 /* TestMothur */;
productType = "com.apple.product-type.tool";
};
8DD76FA90486AB0100D96B5E /* Mothur */ = {
isa = PBXNativeTarget;
buildConfigurationList = 1DEB928508733DD80010E9CD /* Build configuration list for PBXNativeTarget "Mothur" */;
buildPhases = (
8DD76FAB0486AB0100D96B5E /* Sources */,
8DD76FAD0486AB0100D96B5E /* Frameworks */,
8DD76FAF0486AB0100D96B5E /* CopyFiles */,
);
buildRules = (
A7D162CB149F96CA000523E8 /* PBXBuildRule */,
);
dependencies = (
);
name = Mothur;
productInstallPath = "$(HOME)/bin";
productName = mothur;
productReference = 8DD76FB20486AB0100D96B5E /* mothur */;
productType = "com.apple.product-type.tool";
};
/* End PBXNativeTarget section */
/* Begin PBXProject section */
08FB7793FE84155DC02AAC07 /* Project object */ = {
isa = PBXProject;
attributes = {
LastUpgradeCheck = 1200;
ORGANIZATIONNAME = "Schloss Lab";
TargetAttributes = {
481FB5181AC0A63E0076CFF3 = {
CreatedOnToolsVersion = 6.2;
};
};
};
buildConfigurationList = 1DEB928908733DD80010E9CD /* Build configuration list for PBXProject "Mothur" */;
compatibilityVersion = "Xcode 3.2";
developmentRegion = en;
hasScannedForEncodings = 1;
knownRegions = (
ja,
de,
fr,
en,
Base,
);
mainGroup = 08FB7794FE84155DC02AAC07 /* mothur */;
projectDirPath = "";
projectRoot = "";
targets = (
8DD76FA90486AB0100D96B5E /* Mothur */,
481FB5181AC0A63E0076CFF3 /* TestMothur */,
);
};
/* End PBXProject section */
/* Begin PBXSourcesBuildPhase section */
481FB5151AC0A63E0076CFF3 /* Sources */ = {
isa = PBXSourcesBuildPhase;
buildActionMask = 2147483647;
files = (
48E544421E9C292900FF6AB8 /* mcc.cpp in Sources */,
48C728651B66A77800D40830 /* testsequence.cpp in Sources */,
481FB5E51AC1B77E0076CFF3 /* nocommands.cpp in Sources */,
481FB5F61AC1B77E0076CFF3 /* quitcommand.cpp in Sources */,
481FB52C1AC1B0A70076CFF3 /* commandfactory.cpp in Sources */,
481FB5C71AC1B74F0076CFF3 /* getsabundcommand.cpp in Sources */,
481FB5A51AC1B7300076CFF3 /* clusterdoturcommand.cpp in Sources */,
481FB6271AC1B7EA0076CFF3 /* alignmentdb.cpp in Sources */,
489387F62107A60C00284329 /* testoptirefmatrix.cpp in Sources */,
481FB6351AC1B7EA0076CFF3 /* kmerdb.cpp in Sources */,
481FB5721AC1B6D40076CFF3 /* simpson.cpp in Sources */,
481FB55D1AC1B6690076CFF3 /* sharedchao1.cpp in Sources */,
48BDDA7A1ECA3B8E00F0F6C0 /* rabundfloatvector.cpp in Sources */,
481FB5FE1AC1B7970076CFF3 /* removerarecommand.cpp in Sources */,
481FB53C1AC1B5F10076CFF3 /* bootstrap.cpp in Sources */,
48F1C16B23D78D7B0034DAAF /* sharedclrvectors.cpp in Sources */,
481FB5E21AC1B77E0076CFF3 /* metastatscommand.cpp in Sources */,
488563D223CD00C4007B5659 /* taxonomy.cpp in Sources */,
481FB5631AC1B6A10076CFF3 /* sharedkulczynski.cpp in Sources */,
481FB5EF1AC1B77E0076CFF3 /* pcoacommand.cpp in Sources */,
481FB64E1AC1B7F40076CFF3 /* treenode.cpp in Sources */,
481FB5801AC1B6EA0076CFF3 /* weighted.cpp in Sources */,
481FB54F1AC1B63A0076CFF3 /* memeuclidean.cpp in Sources */,
48910D511D58E26C00F60EDB /* testopticluster.cpp in Sources */,
4815BEBE2295A02800677EE2 /* diversityutils.cpp in Sources */,
481FB5611AC1B69B0076CFF3 /* sharedjsd.cpp in Sources */,
481FB5AF1AC1B7300076CFF3 /* createdatabasecommand.cpp in Sources */,
481FB5731AC1B6EA0076CFF3 /* simpsoneven.cpp in Sources */,
481FB58D1AC1B7060076CFF3 /* collect.cpp in Sources */,
481FB5A01AC1B71B0076CFF3 /* classifysvmsharedcommand.cpp in Sources */,
481FB5741AC1B6EA0076CFF3 /* smithwilson.cpp in Sources */,
481FB5381AC1B5E30076CFF3 /* clusterclassic.cpp in Sources */,
48C728721B6AB3B900D40830 /* testremovegroupscommand.cpp in Sources */,
481FB5B61AC1B74F0076CFF3 /* filtersharedcommand.cpp in Sources */,
48ED1E7E235E1BB4003E66F7 /* interactengine.cpp in Sources */,
481FB5F81AC1B77E0076CFF3 /* rarefactsharedcommand.cpp in Sources */,
481FB62E1AC1B7EA0076CFF3 /* fastamap.cpp in Sources */,
481FB5C41AC1B74F0076CFF3 /* getotuscommand.cpp in Sources */,
481FB5A61AC1B7300076CFF3 /* clusterfragmentscommand.cpp in Sources */,
481FB5C01AC1B74F0076CFF3 /* getlineagecommand.cpp in Sources */,
481FB5F71AC1B77E0076CFF3 /* rarefactcommand.cpp in Sources */,
481FB61F1AC1B7AC0076CFF3 /* venncommand.cpp in Sources */,
480D1E311EA92D5500BF9C77 /* fakeoptimatrix.cpp in Sources */,
48E5445A1E9C2E6500FF6AB8 /* fp.cpp in Sources */,
481FB61A1AC1B7AC0076CFF3 /* treesharedcommand.cpp in Sources */,
481FB60A1AC1B7970076CFF3 /* sffinfocommand.cpp in Sources */,
481FB58C1AC1B6FF0076CFF3 /* slayer.cpp in Sources */,
481FB6531AC1B8100076CFF3 /* gotohoverlap.cpp in Sources */,
481FB65B1AC1B82C0076CFF3 /* mothurfisher.cpp in Sources */,
48E5445E1E9C2F0F00FF6AB8 /* fn.cpp in Sources */,
481FB6721AC1B8820076CFF3 /* refchimeratest.cpp in Sources */,
481FB6051AC1B7970076CFF3 /* seqerrorcommand.cpp in Sources */,
48ED1E8623689DE8003E66F7 /* srainfocommand.cpp in Sources */,
481FB6871AC1B8B80076CFF3 /* venn.cpp in Sources */,
48E544791E9D3CE400FF6AB8 /* npv.cpp in Sources */,
481FB5D71AC1B75C0076CFF3 /* makebiomcommand.cpp in Sources */,
48ED1E82235E1D59003E66F7 /* batchengine.cpp in Sources */,
481FB6601AC1B8450076CFF3 /* nast.cpp in Sources */,
48E544461E9C2B1000FF6AB8 /* sensitivity.cpp in Sources */,
481FB5861AC1B6FF0076CFF3 /* chimerarealigner.cpp in Sources */,
481FB5A81AC1B7300076CFF3 /* collectcommand.cpp in Sources */,
481FB5961AC1B71B0076CFF3 /* chimeraccodecommand.cpp in Sources */,
48B44EEF1FB5006500789C45 /* currentfile.cpp in Sources */,
4827A4DC1CB3ED2200345170 /* fastqdataset.cpp in Sources */,
481FB61B1AC1B7AC0076CFF3 /* trimflowscommand.cpp in Sources */,
481FB6781AC1B88F0076CFF3 /* readcolumn.cpp in Sources */,
481FB6831AC1B8B80076CFF3 /* trialSwap2.cpp in Sources */,
481FB63A1AC1B7EA0076CFF3 /* qualityscores.cpp in Sources */,
4803D5B3211DDA5A001C63B5 /* testsharedrabundvectors.cpp in Sources */,
481FB5FD1AC1B7970076CFF3 /* removeotuscommand.cpp in Sources */,
481FB63F1AC1B7EA0076CFF3 /* sequencecountparser.cpp in Sources */,
481FB67C1AC1B88F0076CFF3 /* splitmatrix.cpp in Sources */,
48E5447D1E9D3F0400FF6AB8 /* fdr.cpp in Sources */,
481FB59C1AC1B71B0076CFF3 /* chopseqscommand.cpp in Sources */,
481FB5DE1AC1B77E0076CFF3 /* mergesfffilecommand.cpp in Sources */,
481FB6421AC1B7EA0076CFF3 /* sharedlistvector.cpp in Sources */,
489AF6952106194A0028155E /* optifitcluster.cpp in Sources */,
481FB5A71AC1B7300076CFF3 /* clustersplitcommand.cpp in Sources */,
481FB65C1AC1B82C0076CFF3 /* mothurmetastats.cpp in Sources */,
481FB5EB1AC1B77E0076CFF3 /* fastaqinfocommand.cpp in Sources */,
481FB6341AC1B7EA0076CFF3 /* kmeralign.cpp in Sources */,
481FB55B1AC1B6630076CFF3 /* sharedanderbergs.cpp in Sources */,
481FB5B81AC1B74F0076CFF3 /* getcoremicrobiomecommand.cpp in Sources */,
481FB54E1AC1B6340076CFF3 /* memchord.cpp in Sources */,
481FB6021AC1B7970076CFF3 /* screenseqscommand.cpp in Sources */,
48E544621E9C2FB800FF6AB8 /* fpfn.cpp in Sources */,
48E543EC1E8F15B800FF6AB8 /* opticluster.cpp in Sources */,
481FB52E1AC1B0CB0076CFF3 /* testsetseedcommand.cpp in Sources */,
481FB65A1AC1B8100076CFF3 /* wilcox.cpp in Sources */,
481FB6251AC1B7EA0076CFF3 /* alignment.cpp in Sources */,
481FB5C51AC1B74F0076CFF3 /* getrabundcommand.cpp in Sources */,
481FB56E1AC1B6C30076CFF3 /* sharedsorest.cpp in Sources */,
48E544751E9D3C1200FF6AB8 /* ppv.cpp in Sources */,
481FB6161AC1B7AC0076CFF3 /* summaryqualcommand.cpp in Sources */,
481FB56F1AC1B6C70076CFF3 /* sharedthetan.cpp in Sources */,
481FB5B21AC1B7300076CFF3 /* deuniqueseqscommand.cpp in Sources */,
481FB6331AC1B7EA0076CFF3 /* kmer.cpp in Sources */,
4815BEB9228DD18400677EE2 /* lsabundance.cpp in Sources */,
481FB5BC1AC1B74F0076CFF3 /* getgroupscommand.cpp in Sources */,
481FB5891AC1B6FF0076CFF3 /* maligner.cpp in Sources */,
481FB5CC1AC1B74F0076CFF3 /* heatmapsimcommand.cpp in Sources */,
481FB54C1AC1B62D0076CFF3 /* manhattan.cpp in Sources */,
481FB5E41AC1B77E0076CFF3 /* mimarksattributescommand.cpp in Sources */,
4815BEC62296F19500677EE2 /* sirarefaction.cpp in Sources */,
481FB5C11AC1B74F0076CFF3 /* getlistcountcommand.cpp in Sources */,
481FB57C1AC1B6EA0076CFF3 /* structkulczynski.cpp in Sources */,
481FB5BF1AC1B74F0076CFF3 /* getmimarkspackagecommand.cpp in Sources */,
481FB67A1AC1B88F0076CFF3 /* readtree.cpp in Sources */,
481FB6061AC1B7970076CFF3 /* seqsummarycommand.cpp in Sources */,
481FB54A1AC1B6270076CFF3 /* jackknife.cpp in Sources */,
481FB5431AC1B6110076CFF3 /* geom.cpp in Sources */,
481FB5761AC1B6EA0076CFF3 /* solow.cpp in Sources */,
481FB5421AC1B60D0076CFF3 /* efron.cpp in Sources */,
4815BEC22295CE6800677EE2 /* siabundance.cpp in Sources */,
481FB5461AC1B6190076CFF3 /* hamming.cpp in Sources */,
481FB6891AC1BA760076CFF3 /* phylosummary.cpp in Sources */,
481FB6881AC1B8B80076CFF3 /* weightedlinkage.cpp in Sources */,
4815BECA22970FA700677EE2 /* sishift.cpp in Sources */,
489AF68F2106188E0028155E /* sensspeccalc.cpp in Sources */,
480E8DB21CAB1F5E00A0D137 /* vsearchfileparser.cpp in Sources */,
481FB61E1AC1B7AC0076CFF3 /* unifracweightedcommand.cpp in Sources */,
48910D441D5243E500F60EDB /* mergecountcommand.cpp in Sources */,
48B44EF31FB9EF8200789C45 /* utils.cpp in Sources */,
481FB5951AC1B71B0076CFF3 /* chimerabellerophoncommand.cpp in Sources */,
481FB68D1AC1BA9E0076CFF3 /* classify.cpp in Sources */,
481FB65F1AC1B8450076CFF3 /* myseqdist.cpp in Sources */,
48C728751B6AB4CD00D40830 /* testgetgroupscommand.cpp in Sources */,
481FB6391AC1B7EA0076CFF3 /* ordervector.cpp in Sources */,
481FB59A1AC1B71B0076CFF3 /* chimeraslayercommand.cpp in Sources */,
489AF691210619140028155E /* sharedrabundvector.cpp in Sources */,
48E543EB1E8F15A500FF6AB8 /* summary.cpp in Sources */,
48CF76F121BEBDE000B2FB5C /* mergeotuscommand.cpp in Sources */,
481FB5901AC1B71B0076CFF3 /* aligncommand.cpp in Sources */,
481FB6081AC1B7970076CFF3 /* setdircommand.cpp in Sources */,
481FB62C1AC1B7EA0076CFF3 /* designmap.cpp in Sources */,
481FB5661AC1B6AA0076CFF3 /* sharedmarczewski.cpp in Sources */,
481FB5881AC1B6FF0076CFF3 /* chimeraslayer.cpp in Sources */,
481FB6761AC1B88F0076CFF3 /* readblast.cpp in Sources */,
481FB5D81AC1B75C0076CFF3 /* makecontigscommand.cpp in Sources */,
481FB6481AC1B7EA0076CFF3 /* sparsedistancematrix.cpp in Sources */,
481FB5531AC1B6490076CFF3 /* parsimony.cpp in Sources */,
481FB6641AC1B8450076CFF3 /* optionparser.cpp in Sources */,
481FB68B1AC1BA9E0076CFF3 /* aligntree.cpp in Sources */,
481FB5FB1AC1B77E0076CFF3 /* removelineagecommand.cpp in Sources */,
48E5446D1E9D3A8C00FF6AB8 /* f1score.cpp in Sources */,
48998B6A242E785100DBD0A9 /* onegapdist.cpp in Sources */,
481FB57A1AC1B6EA0076CFF3 /* structchord.cpp in Sources */,
481FB6651AC1B8450076CFF3 /* overlap.cpp in Sources */,
481FB6841AC1B8B80076CFF3 /* trimoligos.cpp in Sources */,
481FB6401AC1B7EA0076CFF3 /* sequencedb.cpp in Sources */,
48576EA81D05F59300BBC9C0 /* distpdataset.cpp in Sources */,
481FB5C81AC1B74F0076CFF3 /* getseqscommand.cpp in Sources */,
481FB6011AC1B7970076CFF3 /* reversecommand.cpp in Sources */,
481FB55E1AC1B66D0076CFF3 /* sharedjackknife.cpp in Sources */,
481FB64B1AC1B7F40076CFF3 /* suffixtree.cpp in Sources */,
481FB5F21AC1B77E0076CFF3 /* phylotypecommand.cpp in Sources */,
481FB61D1AC1B7AC0076CFF3 /* unifracunweightedcommand.cpp in Sources */,
481FB6141AC1B7AC0076CFF3 /* subsamplecommand.cpp in Sources */,
481FB5481AC1B61F0076CFF3 /* hellinger.cpp in Sources */,
481FB5D41AC1B75C0076CFF3 /* listseqscommand.cpp in Sources */,
F4A866B8265BE7720010479A /* protein.cpp in Sources */,
481FB6521AC1B8100076CFF3 /* fileoutput.cpp in Sources */,
484976E022552E0B00F3A291 /* erarefaction.cpp in Sources */,
481FB6851AC1B8B80076CFF3 /* validcalculator.cpp in Sources */,
489AF690210618A80028155E /* optiblastmatrix.cpp in Sources */,
481FB56D1AC1B6C10076CFF3 /* sharedsorclass.cpp in Sources */,
481FB5931AC1B71B0076CFF3 /* binsequencecommand.cpp in Sources */,
481FB6861AC1B8B80076CFF3 /* validparameter.cpp in Sources */,
481FB6431AC1B7EA0076CFF3 /* sharedordervector.cpp in Sources */,
4803D5AD211CA67F001C63B5 /* testsharedrabundvector.cpp in Sources */,
481FB5301AC1B5C80076CFF3 /* calcsparcc.cpp in Sources */,
481FB5B01AC1B7300076CFF3 /* uniqueseqscommand.cpp in Sources */,
481FB6001AC1B7970076CFF3 /* renameseqscommand.cpp in Sources */,
481FB5921AC1B71B0076CFF3 /* anosimcommand.cpp in Sources */,
481FB6201AC1B7B30076CFF3 /* commandoptionparser.cpp in Sources */,
481FB5341AC1B5D60076CFF3 /* dmat.cpp in Sources */,
481FB6171AC1B7AC0076CFF3 /* summarysharedcommand.cpp in Sources */,
481FB68C1AC1BA9E0076CFF3 /* bayesian.cpp in Sources */,
481FB5F41AC1B77E0076CFF3 /* preclustercommand.cpp in Sources */,
48E543ED1E8F15C800FF6AB8 /* optimatrix.cpp in Sources */,
481FB5911AC1B71B0076CFF3 /* amovacommand.cpp in Sources */,
4829D9671B8387D0002EEED4 /* testbiominfocommand.cpp in Sources */,
484976E42255412400F3A291 /* igabundance.cpp in Sources */,
48BDDA721EC9D31400F0F6C0 /* sharedrabundvectors.hpp in Sources */,
4815BEB5228B371E00677EE2 /* lnshift.cpp in Sources */,
481FB58A1AC1B6FF0076CFF3 /* myPerseus.cpp in Sources */,
487D09EC1CB2CEFE007039BF /* averagelinkage.cpp in Sources */,
481FB63E1AC1B7EA0076CFF3 /* sabundvector.cpp in Sources */,
481FB57D1AC1B6EA0076CFF3 /* structpearson.cpp in Sources */,
481FB5331AC1B5D30076CFF3 /* distclearcut.cpp in Sources */,
481FB6811AC1B8960076CFF3 /* subsample.cpp in Sources */,
481FB5521AC1B6450076CFF3 /* odum.cpp in Sources */,
481FB68E1AC1BA9E0076CFF3 /* kmernode.cpp in Sources */,
48C1DDC71D25C1BC00B5BA9D /* (null) in Sources */,
481FB5CE1AC1B75C0076CFF3 /* homovacommand.cpp in Sources */,
481FB6551AC1B8100076CFF3 /* heatmap.cpp in Sources */,
481FB5E61AC1B77E0076CFF3 /* normalizesharedcommand.cpp in Sources */,
48E5444E1E9C2C8F00FF6AB8 /* tptn.cpp in Sources */,
481FB5E71AC1B77E0076CFF3 /* nmdscommand.cpp in Sources */,
481FB52B1AC1B09F0076CFF3 /* setseedcommand.cpp in Sources */,
481FB5261AC0ADA00076CFF3 /* sequence.cpp in Sources */,
481FB5C61AC1B74F0076CFF3 /* getrelabundcommand.cpp in Sources */,
481FB6571AC1B8100076CFF3 /* inputdata.cpp in Sources */,
481FB5451AC1B6170076CFF3 /* gower.cpp in Sources */,
481FB5AC1AC1B7300076CFF3 /* corraxescommand.cpp in Sources */,
481FB5A11AC1B71B0076CFF3 /* classifytreecommand.cpp in Sources */,
48F1C16723D606050034DAAF /* makeclrcommand.cpp in Sources */,
48C7286A1B69598400D40830 /* testmergegroupscommand.cpp in Sources */,
481FB62F1AC1B7EA0076CFF3 /* fastqread.cpp in Sources */,
481FB6901AC1BA9E0076CFF3 /* knn.cpp in Sources */,
48E5444A1E9C2BE100FF6AB8 /* specificity.cpp in Sources */,
481FB56C1AC1B6BE0076CFF3 /* sharedsorabund.cpp in Sources */,
481FB6411AC1B7EA0076CFF3 /* sequenceparser.cpp in Sources */,
481FB6381AC1B7EA0076CFF3 /* oligos.cpp in Sources */,
481FB59E1AC1B71B0076CFF3 /* classifyseqscommand.cpp in Sources */,
4810D5B7218208CC00C668E8 /* testcounttable.cpp in Sources */,
481FB5CF1AC1B75C0076CFF3 /* indicatorcommand.cpp in Sources */,
F4B4B0DD27396EF7003B2133 /* translateseqscommand.cpp in Sources */,
481FB64F1AC1B8100076CFF3 /* consensus.cpp in Sources */,
481FB5441AC1B6140076CFF3 /* goodscoverage.cpp in Sources */,
481FB5DD1AC1B77E0076CFF3 /* distsharedcommand.cpp in Sources */,
481FB5771AC1B6EA0076CFF3 /* spearman.cpp in Sources */,
48F1C16F23D78F8D0034DAAF /* sharedclrvector.cpp in Sources */,
48ED1E7A235E1ACA003E66F7 /* scriptengine.cpp in Sources */,
481FB6031AC1B7970076CFF3 /* aligncheckcommand.cpp in Sources */,
481FB5361AC1B5DC0076CFF3 /* getopt_long.cpp in Sources */,
481FB5A41AC1B7300076CFF3 /* clustercommand.cpp in Sources */,
481FB5671AC1B6AD0076CFF3 /* sharedmorisitahorn.cpp in Sources */,
481FB5581AC1B6590076CFF3 /* shannonrange.cpp in Sources */,
481FB5601AC1B6790076CFF3 /* sharedjest.cpp in Sources */,
481FB64A1AC1B7F40076CFF3 /* suffixnodes.cpp in Sources */,
488841661CC6C35500C5E972 /* renamefilecommand.cpp in Sources */,
481FB53F1AC1B6000076CFF3 /* canberra.cpp in Sources */,
48A11C6E1CDA40F0003481D8 /* testrenamefilecommand.cpp in Sources */,
481FB5BD1AC1B74F0076CFF3 /* getlabelcommand.cpp in Sources */,
481FB5B91AC1B74F0076CFF3 /* getcurrentcommand.cpp in Sources */,
481FB5991AC1B71B0076CFF3 /* chimeraperseuscommand.cpp in Sources */,
481FB68F1AC1BA9E0076CFF3 /* kmertree.cpp in Sources */,
481FB5CB1AC1B74F0076CFF3 /* heatmapcommand.cpp in Sources */,
481FB60C1AC1B7AC0076CFF3 /* makesharedcommand.cpp in Sources */,
481FB5701AC1B6CA0076CFF3 /* sharedthetayc.cpp in Sources */,
481FB62D1AC1B7EA0076CFF3 /* distancedb.cpp in Sources */,
481FB5AA1AC1B7300076CFF3 /* consensusseqscommand.cpp in Sources */,
481FB5AE1AC1B7300076CFF3 /* countseqscommand.cpp in Sources */,
48C7287A1B728D6B00D40830 /* biominfocommand.cpp in Sources */,
481FB5811AC1B6EA0076CFF3 /* whittaker.cpp in Sources */,
481FB58E1AC1B7060076CFF3 /* completelinkage.cpp in Sources */,
481FB6301AC1B7EA0076CFF3 /* flowdata.cpp in Sources */,
481FB59B1AC1B71B0076CFF3 /* chimerauchimecommand.cpp in Sources */,
481FB5971AC1B71B0076CFF3 /* chimeracheckcommand.cpp in Sources */,
481FB5271AC0ADBA0076CFF3 /* mothurout.cpp in Sources */,
481FB54D1AC1B6300076CFF3 /* memchi2.cpp in Sources */,
481FB5E01AC1B77E0076CFF3 /* mergegroupscommand.cpp in Sources */,
481FB56B1AC1B6BB0076CFF3 /* sharedsobscollectsummary.cpp in Sources */,
481FB57F1AC1B6EA0076CFF3 /* uvest.cpp in Sources */,
48E543EE1E92B91100FF6AB8 /* chimeravsearchcommand.cpp in Sources */,
481FB5791AC1B6EA0076CFF3 /* structchi2.cpp in Sources */,
481FB63B1AC1B7EA0076CFF3 /* rabundvector.cpp in Sources */,
481FB5A91AC1B7300076CFF3 /* collectsharedcommand.cpp in Sources */,
4803D5B621231D9D001C63B5 /* testsharedrabundfloatvectors.cpp in Sources */,
481FB6211AC1B7BA0076CFF3 /* communitytype.cpp in Sources */,
48910D521D58E26C00F60EDB /* distcdataset.cpp in Sources */,
48C1DDC61D25C1BC00B5BA9D /* (null) in Sources */,
489AF6962106195E0028155E /* optidata.cpp in Sources */,
48E544711E9D3B2D00FF6AB8 /* accuracy.cpp in Sources */,
481FB5621AC1B69E0076CFF3 /* sharedkstest.cpp in Sources */,
481FB5E91AC1B77E0076CFF3 /* otuhierarchycommand.cpp in Sources */,
489387F9210F633E00284329 /* testOligos.cpp in Sources */,
481FB5351AC1B5D90076CFF3 /* fasta.cpp in Sources */,
481FB6321AC1B7EA0076CFF3 /* groupmap.cpp in Sources */,
481FB5FF1AC1B7970076CFF3 /* removeseqscommand.cpp in Sources */,
48BD4EB921F77258008EA73D /* filefile.cpp in Sources */,
48F06CCD1D74BEC4004A45DD /* testphylotree.cpp in Sources */,
481FB6771AC1B88F0076CFF3 /* readcluster.cpp in Sources */,
481FB5831AC1B6FF0076CFF3 /* ccode.cpp in Sources */,
481FB5681AC1B6B20076CFF3 /* sharedochiai.cpp in Sources */,
481FB56A1AC1B6B80076CFF3 /* sharedsobs.cpp in Sources */,
481FB5DB1AC1B75C0076CFF3 /* makelefsecommand.cpp in Sources */,
48E544561E9C2DF500FF6AB8 /* tn.cpp in Sources */,
481FB6371AC1B7EA0076CFF3 /* nameassignment.cpp in Sources */,
489AF694210619410028155E /* optirefmatrix.cpp in Sources */,
481FB5D21AC1B75C0076CFF3 /* libshuffcommand.cpp in Sources */,
4809EC99227B405700B4D0E5 /* metrologstudent.cpp in Sources */,
481FB5561AC1B6520076CFF3 /* shannon.cpp in Sources */,
481FB6591AC1B8100076CFF3 /* linearalgebra.cpp in Sources */,
481FB5411AC1B6070076CFF3 /* coverage.cpp in Sources */,
480E8DB11CAB12ED00A0D137 /* testfastqread.cpp in Sources */,
481FB6231AC1B7BA0076CFF3 /* pam.cpp in Sources */,
481FB5BA1AC1B74F0076CFF3 /* getdistscommand.cpp in Sources */,
481FB6191AC1B7AC0076CFF3 /* systemcommand.cpp in Sources */,
481FB6611AC1B8450076CFF3 /* alignreport.cpp in Sources */,
48DB37B41B3B27E000C372A4 /* makefilecommand.cpp in Sources */,
481FB6181AC1B7AC0076CFF3 /* summarytaxcommand.cpp in Sources */,
481FB5CD1AC1B74F0076CFF3 /* helpcommand.cpp in Sources */,
481FB6701AC1B8820076CFF3 /* raredisplay.cpp in Sources */,
481FB5F91AC1B77E0076CFF3 /* removedistscommand.cpp in Sources */,
481FB6581AC1B8100076CFF3 /* libshuff.cpp in Sources */,
481FB59D1AC1B71B0076CFF3 /* classifyotucommand.cpp in Sources */,
481FB5781AC1B6EA0076CFF3 /* speciesprofile.cpp in Sources */,
481FB5401AC1B6030076CFF3 /* chao1.cpp in Sources */,
481FB5591AC1B65D0076CFF3 /* sharedjabund.cpp in Sources */,
481FB62A1AC1B7EA0076CFF3 /* counttable.cpp in Sources */,
481FB53A1AC1B5EC0076CFF3 /* bergerparker.cpp in Sources */,
482AC3BA2562B57600C9AF4A /* picrust.cpp in Sources */,
48E544521E9C2CFD00FF6AB8 /* tp.cpp in Sources */,
481FB5AD1AC1B7300076CFF3 /* countgroupscommand.cpp in Sources */,
481FB61C1AC1B7AC0076CFF3 /* trimseqscommand.cpp in Sources */,
481FB5311AC1B5CD0076CFF3 /* clearcut.cpp in Sources */,
480D1E2A1EA681D100BF9C77 /* testclustercalcs.cpp in Sources */,
481FB5651AC1B6A70076CFF3 /* sharedlennon.cpp in Sources */,
481FB6241AC1B7BA0076CFF3 /* qFinderDMM.cpp in Sources */,
F4A866C0265BE7EC0010479A /* aminoacid.cpp in Sources */,
481FB6311AC1B7EA0076CFF3 /* fullmatrix.cpp in Sources */,
481FB51C1AC0A63E0076CFF3 /* main.cpp in Sources */,
481FB58F1AC1B71B0076CFF3 /* newcommandtemplate.cpp in Sources */,
48098ED6219DE7A500031FA4 /* testsubsample.cpp in Sources */,
4809ECA22280898E00B4D0E5 /* igrarefaction.cpp in Sources */,
481FB5571AC1B6550076CFF3 /* shannoneven.cpp in Sources */,
481FB5D11AC1B75C0076CFF3 /* lefsecommand.cpp in Sources */,
481FB6561AC1B8100076CFF3 /* heatmapsim.cpp in Sources */,
489AF6932106192E0028155E /* clusterfitcommand.cpp in Sources */,
481FB5EA1AC1B77E0076CFF3 /* pairwiseseqscommand.cpp in Sources */,
481FB5F11AC1B77E0076CFF3 /* phylodiversitycommand.cpp in Sources */,
481FB5501AC1B63D0076CFF3 /* mempearson.cpp in Sources */,
481FB5B51AC1B7300076CFF3 /* filterseqscommand.cpp in Sources */,
481FB6621AC1B8450076CFF3 /* noalign.cpp in Sources */,
F4A866D2266912830010479A /* proteindb.cpp in Sources */,
481FB5E31AC1B77E0076CFF3 /* mgclustercommand.cpp in Sources */,
481FB5491AC1B6220076CFF3 /* invsimpson.cpp in Sources */,
4809ECA622831A5E00B4D0E5 /* lnabundance.cpp in Sources */,
48576EA51D05E8F600BBC9C0 /* testoptimatrix.cpp in Sources */,
481FB5821AC1B6FF0076CFF3 /* bellerophon.cpp in Sources */,
481FB6731AC1B8820076CFF3 /* seqnoise.cpp in Sources */,
481FB5DC1AC1B75C0076CFF3 /* makelookupcommand.cpp in Sources */,
481FB53D1AC1B5F80076CFF3 /* bstick.cpp in Sources */,
481FB60B1AC1B7AC0076CFF3 /* sffmultiplecommand.cpp in Sources */,
481FB5F51AC1B77E0076CFF3 /* primerdesigncommand.cpp in Sources */,
481FB5B41AC1B7300076CFF3 /* distancecommand.cpp in Sources */,
481FB5391AC1B5E90076CFF3 /* ace.cpp in Sources */,
481FB5751AC1B6EA0076CFF3 /* soergel.cpp in Sources */,
481FB5DA1AC1B75C0076CFF3 /* makegroupcommand.cpp in Sources */,
488841621CC515A000C5E972 /* (null) in Sources */,
481FB5691AC1B6B50076CFF3 /* sharedrjsd.cpp in Sources */,
481FB6801AC1B8960076CFF3 /* slibshuff.cpp in Sources */,
481FB67B1AC1B88F0076CFF3 /* readphylipvector.cpp in Sources */,
481FB64C1AC1B7F40076CFF3 /* tree.cpp in Sources */,
481FB6631AC1B8450076CFF3 /* needlemanoverlap.cpp in Sources */,
481FB6931AC1BAA60076CFF3 /* taxonomynode.cpp in Sources */,
481FB60E1AC1B7AC0076CFF3 /* shhhseqscommand.cpp in Sources */,
481FB5E11AC1B77E0076CFF3 /* mergetaxsummarycommand.cpp in Sources */,
483A9BAF225BBE55006102DF /* metroig.cpp in Sources */,
481FB5AB1AC1B7300076CFF3 /* cooccurrencecommand.cpp in Sources */,
481FB5D61AC1B75C0076CFF3 /* mantelcommand.cpp in Sources */,
481FB57E1AC1B6EA0076CFF3 /* unweighted.cpp in Sources */,
481FB60F1AC1B7AC0076CFF3 /* sortseqscommand.cpp in Sources */,
4809EC95227B3A5B00B4D0E5 /* metrolognormal.cpp in Sources */,
489387FA2110C79200284329 /* testtrimoligos.cpp in Sources */,
481FB67D1AC1B88F0076CFF3 /* treereader.cpp in Sources */,
481FB6131AC1B7AC0076CFF3 /* sracommand.cpp in Sources */,
48C728671B66AB8800D40830 /* pcrseqscommand.cpp in Sources */,
481FB5541AC1B64C0076CFF3 /* prng.cpp in Sources */,
481FB57B1AC1B6EA0076CFF3 /* structeuclidean.cpp in Sources */,
481FB6221AC1B7BA0076CFF3 /* kmeans.cpp in Sources */,
481FB54B1AC1B62A0076CFF3 /* logsd.cpp in Sources */,
481FB55A1AC1B6600076CFF3 /* sharedace.cpp in Sources */,
481FB5BB1AC1B74F0076CFF3 /* getgroupcommand.cpp in Sources */,
481FB6361AC1B7EA0076CFF3 /* listvector.cpp in Sources */,
481FB5ED1AC1B77E0076CFF3 /* parsimonycommand.cpp in Sources */,
481FB55F1AC1B6750076CFF3 /* sharedjclass.cpp in Sources */,
481FB6101AC1B7AC0076CFF3 /* sparcccommand.cpp in Sources */,
481FB5E81AC1B77E0076CFF3 /* otuassociationcommand.cpp in Sources */,
481FB5B31AC1B7300076CFF3 /* deuniquetreecommand.cpp in Sources */,
481FB5D91AC1B75C0076CFF3 /* makefastqcommand.cpp in Sources */,
481FB5A21AC1B71B0076CFF3 /* clearcutcommand.cpp in Sources */,
48D6E9681CA42389008DF76B /* testvsearchfileparser.cpp in Sources */,
4809EC9E227C9B3100B4D0E5 /* metrosichel.cpp in Sources */,
481FB5851AC1B6FF0076CFF3 /* chimeracheckrdp.cpp in Sources */,
481FB55C1AC1B6660076CFF3 /* sharedbraycurtis.cpp in Sources */,
481FB5BE1AC1B74F0076CFF3 /* getmetacommunitycommand.cpp in Sources */,
481FB6821AC1B8AF0076CFF3 /* svm.cpp in Sources */,
481FB6911AC1BAA60076CFF3 /* phylotree.cpp in Sources */,
481FB6261AC1B7EA0076CFF3 /* alignmentcell.cpp in Sources */,
481FB5C21AC1B74F0076CFF3 /* getoturepcommand.cpp in Sources */,
481FB5D01AC1B75C0076CFF3 /* kruskalwalliscommand.cpp in Sources */,
48B662031BBB1B6600997EE4 /* testrenameseqscommand.cpp in Sources */,
48E418561D08893A004C36AB /* (null) in Sources */,
481FB5511AC1B6410076CFF3 /* npshannon.cpp in Sources */,
481FB6471AC1B7EA0076CFF3 /* sparsematrix.cpp in Sources */,
481FB5871AC1B6FF0076CFF3 /* decalc.cpp in Sources */,
481FB6791AC1B88F0076CFF3 /* readphylip.cpp in Sources */,
481FB6151AC1B7AC0076CFF3 /* summarycommand.cpp in Sources */,
481FB5EE1AC1B77E0076CFF3 /* pcacommand.cpp in Sources */,
48BDDA761ECA067000F0F6C0 /* sharedrabundfloatvectors.cpp in Sources */,
481FB5711AC1B6D40076CFF3 /* shen.cpp in Sources */,
4803D5B0211CD839001C63B5 /* testsharedrabundfloatvector.cpp in Sources */,
481FB6501AC1B8100076CFF3 /* dlibshuff.cpp in Sources */,
484976E82256799100F3A291 /* diversityestimatorcommand.cpp in Sources */,
481FB64D1AC1B7F40076CFF3 /* treemap.cpp in Sources */,
481FB67F1AC1B8960076CFF3 /* singlelinkage.cpp in Sources */,
481FB5641AC1B6A40076CFF3 /* sharedkulczynskicody.cpp in Sources */,
481FB60D1AC1B7AC0076CFF3 /* shhhercommand.cpp in Sources */,
481FB5FA1AC1B77E0076CFF3 /* removegroupscommand.cpp in Sources */,
481FB5371AC1B5E00076CFF3 /* cluster.cpp in Sources */,
481FB53B1AC1B5EF0076CFF3 /* boneh.cpp in Sources */,
481FB6071AC1B7970076CFF3 /* setcurrentcommand.cpp in Sources */,
481FB5321AC1B5D00076CFF3 /* cmdargs.cpp in Sources */,
F44268EF27BD52D50000C15D /* alignmusclecommand.cpp in Sources */,
481FB6711AC1B8820076CFF3 /* rarefact.cpp in Sources */,
F4103AD625A4DB80001ED741 /* sharedrabundvectors.cpp in Sources */,
481FB5841AC1B6FF0076CFF3 /* mothurchimera.cpp in Sources */,
481FB6121AC1B7AC0076CFF3 /* splitgroupscommand.cpp in Sources */,
489AF692210619170028155E /* sharedrabundfloatvector.cpp in Sources */,
481FB6921AC1BAA60076CFF3 /* taxonomyequalizer.cpp in Sources */,
481FB68A1AC1BA9E0076CFF3 /* alignnode.cpp in Sources */,
481FB58B1AC1B6FF0076CFF3 /* pintail.cpp in Sources */,
4815BEBD2293189600677EE2 /* lsrarefaction.cpp in Sources */,
48D6E96B1CA4262A008DF76B /* dataset.cpp in Sources */,
481FB6041AC1B7970076CFF3 /* sensspeccommand.cpp in Sources */,
481FB6491AC1B7F40076CFF3 /* suffixdb.cpp in Sources */,
481FB6111AC1B7AC0076CFF3 /* splitabundcommand.cpp in Sources */,
481FB5471AC1B61C0076CFF3 /* heip.cpp in Sources */,
481FB5D31AC1B75C0076CFF3 /* listotuscommand.cpp in Sources */,
481FB5551AC1B64F0076CFF3 /* qstat.cpp in Sources */,
481FB5DF1AC1B77E0076CFF3 /* mergefilecommand.cpp in Sources */,
481FB5981AC1B71B0076CFF3 /* chimerapintailcommand.cpp in Sources */,
481FB6091AC1B7970076CFF3 /* setlogfilecommand.cpp in Sources */,
481FB5C91AC1B74F0076CFF3 /* getsharedotucommand.cpp in Sources */,
481FB5B11AC1B7300076CFF3 /* degapseqscommand.cpp in Sources */,
);
runOnlyForDeploymentPostprocessing = 0;
};
8DD76FAB0486AB0100D96B5E /* Sources */ = {
isa = PBXSourcesBuildPhase;
buildActionMask = 2147483647;
files = (
A7E9B88112D37EC400DA6239 /* ace.cpp in Sources */,
A7E9B88212D37EC400DA6239 /* aligncommand.cpp in Sources */,
A7E9B88312D37EC400DA6239 /* alignment.cpp in Sources */,
A7E9B88412D37EC400DA6239 /* alignmentcell.cpp in Sources */,
48ED1E81235E1D59003E66F7 /* batchengine.cpp in Sources */,
48A0B8F125472C4500726384 /* biomhdf5.cpp in Sources */,
A7E9B88512D37EC400DA6239 /* alignmentdb.cpp in Sources */,
A7E9B88712D37EC400DA6239 /* bayesian.cpp in Sources */,
A7E9B88812D37EC400DA6239 /* bellerophon.cpp in Sources */,
A7E9B88912D37EC400DA6239 /* bergerparker.cpp in Sources */,
F4103AD325A4DB7F001ED741 /* sharedrabundvectors.cpp in Sources */,
A7E9B88A12D37EC400DA6239 /* binsequencecommand.cpp in Sources */,
A7E9B88D12D37EC400DA6239 /* boneh.cpp in Sources */,
A7E9B88E12D37EC400DA6239 /* bootstrap.cpp in Sources */,
A7E9B89012D37EC400DA6239 /* bstick.cpp in Sources */,
A7E9B89212D37EC400DA6239 /* canberra.cpp in Sources */,
48FB99C5209B69FA00FF9F6E /* optirefmatrix.cpp in Sources */,
A7E9B89412D37EC400DA6239 /* ccode.cpp in Sources */,
A7E9B89512D37EC400DA6239 /* chao1.cpp in Sources */,
A7E9B89612D37EC400DA6239 /* mothurchimera.cpp in Sources */,
A7E9B89712D37EC400DA6239 /* chimerabellerophoncommand.cpp in Sources */,
A7E9B89812D37EC400DA6239 /* chimeraccodecommand.cpp in Sources */,
A7E9B89912D37EC400DA6239 /* chimeracheckcommand.cpp in Sources */,
48E981CF189C38FB0042BE9D /* (null) in Sources */,
A7E9B89A12D37EC400DA6239 /* chimeracheckrdp.cpp in Sources */,
A7E9B89B12D37EC400DA6239 /* chimerapintailcommand.cpp in Sources */,
F45A2E3D25A78B4D00994F76 /* contigsreport.cpp in Sources */,
F4A866D1266912830010479A /* proteindb.cpp in Sources */,
48FB99CF20A4F3FB00FF9F6E /* optifitcluster.cpp in Sources */,
A7E9B89C12D37EC400DA6239 /* chimerarealigner.cpp in Sources */,
A7E9B89E12D37EC400DA6239 /* chimeraslayer.cpp in Sources */,
A7E9B89F12D37EC400DA6239 /* chimeraslayercommand.cpp in Sources */,
A7E9B8A012D37EC400DA6239 /* chopseqscommand.cpp in Sources */,
A7E9B8A112D37EC400DA6239 /* classify.cpp in Sources */,
48576EA21D05DBCD00BBC9C0 /* vsearchfileparser.cpp in Sources */,
48910D461D58CAD700F60EDB /* opticluster.cpp in Sources */,
A7E9B8A212D37EC400DA6239 /* classifyotucommand.cpp in Sources */,
F44268EE27BD52D50000C15D /* alignmusclecommand.cpp in Sources */,
A7E9B8A312D37EC400DA6239 /* classifyseqscommand.cpp in Sources */,
48A055332491577800D0F97F /* sffheader.cpp in Sources */,
481E40E1244F62980059C925 /* calculator.cpp in Sources */,
A7E9B8A412D37EC400DA6239 /* clearcut.cpp in Sources */,
48ED1E79235E1ACA003E66F7 /* scriptengine.cpp in Sources */,
A7E9B8A512D37EC400DA6239 /* clearcutcommand.cpp in Sources */,
A7E9B8A612D37EC400DA6239 /* cluster.cpp in Sources */,
A7E9B8A712D37EC400DA6239 /* clusterclassic.cpp in Sources */,
A7E9B8A812D37EC400DA6239 /* clustercommand.cpp in Sources */,
A7E9B8A912D37EC400DA6239 /* clusterdoturcommand.cpp in Sources */,
A7E9B8AA12D37EC400DA6239 /* clusterfragmentscommand.cpp in Sources */,
48EDB76C1D1320DD00F76E93 /* chimeravsearchcommand.cpp in Sources */,
A7E9B8AB12D37EC400DA6239 /* clustersplitcommand.cpp in Sources */,
48E5446C1E9D3A8C00FF6AB8 /* f1score.cpp in Sources */,
A7E9B8AC12D37EC400DA6239 /* cmdargs.cpp in Sources */,
A7E9B8AD12D37EC400DA6239 /* collect.cpp in Sources */,
481E40DF244F619D0059C925 /* eachgapignore.cpp in Sources */,
A7E9B8AE12D37EC400DA6239 /* collectcommand.cpp in Sources */,
A7E9B8AF12D37EC400DA6239 /* collectsharedcommand.cpp in Sources */,
A7E9B8B012D37EC400DA6239 /* commandfactory.cpp in Sources */,
A7E9B8B112D37EC400DA6239 /* commandoptionparser.cpp in Sources */,
A7E9B8B312D37EC400DA6239 /* consensus.cpp in Sources */,
A7E9B8B412D37EC400DA6239 /* consensusseqscommand.cpp in Sources */,
A7E9B8B512D37EC400DA6239 /* corraxescommand.cpp in Sources */,
A7E9B8B612D37EC400DA6239 /* coverage.cpp in Sources */,
A7E9B8B812D37EC400DA6239 /* decalc.cpp in Sources */,
A7E9B8B912D37EC400DA6239 /* uniqueseqscommand.cpp in Sources */,
A7E9B8BA12D37EC400DA6239 /* degapseqscommand.cpp in Sources */,
F4A866BF265BE7EC0010479A /* aminoacid.cpp in Sources */,
4815BEB12289E13500677EE2 /* lnrarefaction.cpp in Sources */,
A7E9B8BB12D37EC400DA6239 /* deuniqueseqscommand.cpp in Sources */,
A7E9B8BC12D37EC400DA6239 /* distancecommand.cpp in Sources */,
A7E9B8BD12D37EC400DA6239 /* distancedb.cpp in Sources */,
A7E9B8BE12D37EC400DA6239 /* distclearcut.cpp in Sources */,
A7E9B8BF12D37EC400DA6239 /* dlibshuff.cpp in Sources */,
A7E9B8C012D37EC400DA6239 /* dmat.cpp in Sources */,
A7E9B8C112D37EC400DA6239 /* efron.cpp in Sources */,
A7E9B8C312D37EC400DA6239 /* fasta.cpp in Sources */,
A7E9B8C412D37EC400DA6239 /* fastamap.cpp in Sources */,
48BDDA751ECA067000F0F6C0 /* sharedrabundfloatvectors.cpp in Sources */,
A7E9B8C512D37EC400DA6239 /* fileoutput.cpp in Sources */,
A7E9B8C612D37EC400DA6239 /* filterseqscommand.cpp in Sources */,
A7E9B8C812D37EC400DA6239 /* flowdata.cpp in Sources */,
48910D431D5243E500F60EDB /* mergecountcommand.cpp in Sources */,
48E0230324BF488D00BFEA41 /* report.cpp in Sources */,
A7E9B8CB12D37EC400DA6239 /* fullmatrix.cpp in Sources */,
A7E9B8CC12D37EC400DA6239 /* geom.cpp in Sources */,
A7E9B8CD12D37EC400DA6239 /* getgroupcommand.cpp in Sources */,
A7E9B8CE12D37EC400DA6239 /* getgroupscommand.cpp in Sources */,
A7E9B8CF12D37EC400DA6239 /* getlabelcommand.cpp in Sources */,
A7E9B8D012D37EC400DA6239 /* getlineagecommand.cpp in Sources */,
A7E9B8D112D37EC400DA6239 /* getlistcountcommand.cpp in Sources */,
A7E9B8D212D37EC400DA6239 /* getopt_long.cpp in Sources */,
48FB99C920A48EF700FF9F6E /* optidata.cpp in Sources */,
A7E9B8D312D37EC400DA6239 /* getoturepcommand.cpp in Sources */,
A7E9B8D512D37EC400DA6239 /* getrabundcommand.cpp in Sources */,
A7E9B8D612D37EC400DA6239 /* getrelabundcommand.cpp in Sources */,
A7E9B8D712D37EC400DA6239 /* getsabundcommand.cpp in Sources */,
48A055302490066C00D0F97F /* sffread.cpp in Sources */,
A7E9B8D812D37EC400DA6239 /* getseqscommand.cpp in Sources */,
F4A866B7265BE7720010479A /* protein.cpp in Sources */,
4809EC9D227C9B3100B4D0E5 /* metrosichel.cpp in Sources */,
A7E9B8D912D37EC400DA6239 /* getsharedotucommand.cpp in Sources */,
48E544701E9D3B2D00FF6AB8 /* accuracy.cpp in Sources */,
4815BEC12295CE6800677EE2 /* siabundance.cpp in Sources */,
A7E9B8DB12D37EC400DA6239 /* goodscoverage.cpp in Sources */,
A7E9B8DC12D37EC400DA6239 /* gotohoverlap.cpp in Sources */,
A7E9B8DD12D37EC400DA6239 /* gower.cpp in Sources */,
A7E9B8DE12D37EC400DA6239 /* groupmap.cpp in Sources */,
48A0B8F625472C6500726384 /* biomsimple.cpp in Sources */,
48A0B8EC2547282600726384 /* biom.cpp in Sources */,
488841651CC6C34900C5E972 /* renamefilecommand.cpp in Sources */,
4893DE2918EEF28100C615DF /* (null) in Sources */,
A7E9B8DF12D37EC400DA6239 /* hamming.cpp in Sources */,
A7E9B8E212D37EC400DA6239 /* heatmap.cpp in Sources */,
A7E9B8E312D37EC400DA6239 /* heatmapcommand.cpp in Sources */,
A7E9B8E412D37EC400DA6239 /* heatmapsim.cpp in Sources */,
A7E9B8E512D37EC400DA6239 /* heatmapsimcommand.cpp in Sources */,
A7E9B8E612D37EC400DA6239 /* heip.cpp in Sources */,
481FB52A1AC19F8B0076CFF3 /* setseedcommand.cpp in Sources */,
A7E9B8E712D37EC400DA6239 /* hellinger.cpp in Sources */,
A7E9B8E812D37EC400DA6239 /* helpcommand.cpp in Sources */,
A7E9B8E912D37EC400DA6239 /* indicatorcommand.cpp in Sources */,
A7E9B8EA12D37EC400DA6239 /* inputdata.cpp in Sources */,
A7E9B8EB12D37EC400DA6239 /* invsimpson.cpp in Sources */,
A7E9B8EC12D37EC400DA6239 /* jackknife.cpp in Sources */,
A7E9B8ED12D37EC400DA6239 /* kmer.cpp in Sources */,
A7E9B8EE12D37EC400DA6239 /* kmerdb.cpp in Sources */,
A7E9B8EF12D37EC400DA6239 /* knn.cpp in Sources */,
48A85BAD18E1AF2000199B6F /* (null) in Sources */,
A7E9B8F012D37EC400DA6239 /* libshuff.cpp in Sources */,
48F1C16623D606050034DAAF /* makeclrcommand.cpp in Sources */,
48F98E4D1A9CFD670005E81B /* completelinkage.cpp in Sources */,
A7E9B8F112D37EC400DA6239 /* libshuffcommand.cpp in Sources */,
A7E9B8F212D37EC400DA6239 /* listseqscommand.cpp in Sources */,
A7E9B8F312D37EC400DA6239 /* listvector.cpp in Sources */,
483A9BAE225BBE55006102DF /* metroig.cpp in Sources */,
48E544451E9C2B1000FF6AB8 /* sensitivity.cpp in Sources */,
A7E9B8F412D37EC400DA6239 /* logsd.cpp in Sources */,
482AC3B92562B57600C9AF4A /* picrust.cpp in Sources */,
A7E9B8F512D37EC400DA6239 /* makegroupcommand.cpp in Sources */,
48705AC719BE32C50075E977 /* sharedrjsd.cpp in Sources */,
48F1C16E23D78F8D0034DAAF /* sharedclrvector.cpp in Sources */,
48E5445D1E9C2F0F00FF6AB8 /* fn.cpp in Sources */,
A7E9B8F612D37EC400DA6239 /* maligner.cpp in Sources */,
A7E9B8F712D37EC400DA6239 /* manhattan.cpp in Sources */,
A7E9B8F812D37EC400DA6239 /* distsharedcommand.cpp in Sources */,
A7E9B8F912D37EC400DA6239 /* memchi2.cpp in Sources */,
A7E9B8FA12D37EC400DA6239 /* memchord.cpp in Sources */,
A7E9B8FB12D37EC400DA6239 /* memeuclidean.cpp in Sources */,
A7E9B8FC12D37EC400DA6239 /* mempearson.cpp in Sources */,
A7E9B8FD12D37EC400DA6239 /* mergefilecommand.cpp in Sources */,
A7E9B8FF12D37EC400DA6239 /* metastatscommand.cpp in Sources */,
F41A1B91261257DE00144985 /* kmerdist.cpp in Sources */,
A7E9B90012D37EC400DA6239 /* mgclustercommand.cpp in Sources */,
A7E9B90112D37EC400DA6239 /* mothur.cpp in Sources */,
A7E9B90212D37EC400DA6239 /* mothurout.cpp in Sources */,
A7E9B90312D37EC400DA6239 /* nameassignment.cpp in Sources */,
A7E9B90412D37EC400DA6239 /* nast.cpp in Sources */,
A7E9B90512D37EC400DA6239 /* alignreport.cpp in Sources */,
A7E9B90612D37EC400DA6239 /* needlemanoverlap.cpp in Sources */,
A7E9B90712D37EC400DA6239 /* noalign.cpp in Sources */,
A7E9B90812D37EC400DA6239 /* nocommands.cpp in Sources */,
481E40DD244F52460059C925 /* ignoregaps.cpp in Sources */,
A7E9B90912D37EC400DA6239 /* normalizesharedcommand.cpp in Sources */,
A7E9B90A12D37EC400DA6239 /* npshannon.cpp in Sources */,
A7E9B90B12D37EC400DA6239 /* odum.cpp in Sources */,
A7E9B90C12D37EC400DA6239 /* optionparser.cpp in Sources */,
A7E9B90D12D37EC400DA6239 /* ordervector.cpp in Sources */,
A7E9B90E12D37EC400DA6239 /* otuhierarchycommand.cpp in Sources */,
F4B4B0DC27396EF7003B2133 /* translateseqscommand.cpp in Sources */,
A7E9B90F12D37EC400DA6239 /* overlap.cpp in Sources */,
A7E9B91012D37EC400DA6239 /* pairwiseseqscommand.cpp in Sources */,
A7E9B91112D37EC400DA6239 /* fastaqinfocommand.cpp in Sources */,
A7E9B91312D37EC400DA6239 /* parsimony.cpp in Sources */,
A7E9B91412D37EC400DA6239 /* parsimonycommand.cpp in Sources */,
A7E9B91512D37EC400DA6239 /* pcoacommand.cpp in Sources */,
A7E9B91712D37EC400DA6239 /* phylodiversitycommand.cpp in Sources */,
488841611CC515A000C5E972 /* (null) in Sources */,
485B0E081F264F2E00CA5F57 /* sharedrabundvector.cpp in Sources */,
A7E9B91812D37EC400DA6239 /* phylosummary.cpp in Sources */,
A7E9B91912D37EC400DA6239 /* phylotree.cpp in Sources */,
A7E9B91A12D37EC400DA6239 /* phylotypecommand.cpp in Sources */,
A7E9B91B12D37EC400DA6239 /* pintail.cpp in Sources */,
48DB37B31B3B27E000C372A4 /* makefilecommand.cpp in Sources */,
A7E9B91D12D37EC400DA6239 /* preclustercommand.cpp in Sources */,
A7E9B91E12D37EC400DA6239 /* prng.cpp in Sources */,
A7E9B92012D37EC400DA6239 /* qstat.cpp in Sources */,
A7E9B92112D37EC400DA6239 /* qualityscores.cpp in Sources */,
A7E9B92212D37EC400DA6239 /* quitcommand.cpp in Sources */,
A7E9B92312D37EC400DA6239 /* rabundvector.cpp in Sources */,
A7E9B92512D37EC400DA6239 /* raredisplay.cpp in Sources */,
A7E9B92612D37EC400DA6239 /* rarefact.cpp in Sources */,
48B44EF21FB9EF8200789C45 /* utils.cpp in Sources */,
A7E9B92712D37EC400DA6239 /* rarefactcommand.cpp in Sources */,
A7E9B92812D37EC400DA6239 /* rarefactsharedcommand.cpp in Sources */,
A7E9B92912D37EC400DA6239 /* readblast.cpp in Sources */,
A7E9B92A12D37EC400DA6239 /* readcluster.cpp in Sources */,
A7E9B92B12D37EC400DA6239 /* readcolumn.cpp in Sources */,
A7E9B92F12D37EC400DA6239 /* readphylip.cpp in Sources */,
48BD4EB821F7724C008EA73D /* filefile.cpp in Sources */,
A7E9B93012D37EC400DA6239 /* readtree.cpp in Sources */,
A7E9B93212D37EC400DA6239 /* removegroupscommand.cpp in Sources */,
A7E9B93312D37EC400DA6239 /* removelineagecommand.cpp in Sources */,
A7E9B93512D37EC400DA6239 /* removeseqscommand.cpp in Sources */,
A7E9B93712D37EC400DA6239 /* reversecommand.cpp in Sources */,
A7E9B93812D37EC400DA6239 /* sabundvector.cpp in Sources */,
A7E9B93912D37EC400DA6239 /* screenseqscommand.cpp in Sources */,
A7E9B93A12D37EC400DA6239 /* aligncheckcommand.cpp in Sources */,
4815BEBC2293189600677EE2 /* lsrarefaction.cpp in Sources */,
A7E9B93B12D37EC400DA6239 /* sensspeccommand.cpp in Sources */,
A7E9B93C12D37EC400DA6239 /* seqerrorcommand.cpp in Sources */,
48FB99CC20A4AD7D00FF9F6E /* optiblastmatrix.cpp in Sources */,
A7E9B93D12D37EC400DA6239 /* seqsummarycommand.cpp in Sources */,
A7E9B93E12D37EC400DA6239 /* sequence.cpp in Sources */,
A7E9B93F12D37EC400DA6239 /* sequencedb.cpp in Sources */,
A7E9B94012D37EC400DA6239 /* setdircommand.cpp in Sources */,
A7E9B94112D37EC400DA6239 /* setlogfilecommand.cpp in Sources */,
A7E9B94212D37EC400DA6239 /* sffinfocommand.cpp in Sources */,
A7E9B94312D37EC400DA6239 /* shannon.cpp in Sources */,
483C952E188F0CAD0035E7B7 /* (null) in Sources */,
48910D4B1D58CBA300F60EDB /* optimatrix.cpp in Sources */,
A7E9B94412D37EC400DA6239 /* shannoneven.cpp in Sources */,
A7E9B94512D37EC400DA6239 /* sharedace.cpp in Sources */,
48BDDA791ECA3B8E00F0F6C0 /* rabundfloatvector.cpp in Sources */,
A7E9B94612D37EC400DA6239 /* sharedanderbergs.cpp in Sources */,
48B01D2C2016470F006BE140 /* sensspeccalc.cpp in Sources */,
A7E9B94712D37EC400DA6239 /* sharedbraycurtis.cpp in Sources */,
A7E9B94812D37EC400DA6239 /* sharedchao1.cpp in Sources */,
A7E9B94912D37EC400DA6239 /* makesharedcommand.cpp in Sources */,
A7E9B94A12D37EC400DA6239 /* sharedjabund.cpp in Sources */,
A7E9B94B12D37EC400DA6239 /* sharedjackknife.cpp in Sources */,
4815BEC52296F19500677EE2 /* sirarefaction.cpp in Sources */,
A7E9B94C12D37EC400DA6239 /* sharedjclass.cpp in Sources */,
A7E9B94D12D37EC400DA6239 /* sharedjest.cpp in Sources */,
4809ECA12280898E00B4D0E5 /* igrarefaction.cpp in Sources */,
48E544741E9D3C1200FF6AB8 /* ppv.cpp in Sources */,
A7E9B94E12D37EC400DA6239 /* sharedkstest.cpp in Sources */,
A7E9B94F12D37EC400DA6239 /* sharedkulczynski.cpp in Sources */,
A7E9B95012D37EC400DA6239 /* sharedkulczynskicody.cpp in Sources */,
48705AC419BE32C50075E977 /* getmimarkspackagecommand.cpp in Sources */,
48C728791B728D6B00D40830 /* biominfocommand.cpp in Sources */,
A7E9B95112D37EC400DA6239 /* sharedlennon.cpp in Sources */,
A7E9B95212D37EC400DA6239 /* sharedlistvector.cpp in Sources */,
488563D123CD00C4007B5659 /* taxonomy.cpp in Sources */,
A7E9B95312D37EC400DA6239 /* sharedmarczewski.cpp in Sources */,
A7E9B95412D37EC400DA6239 /* sharedmorisitahorn.cpp in Sources */,
A7E9B95512D37EC400DA6239 /* sharedochiai.cpp in Sources */,
A7E9B95612D37EC400DA6239 /* sharedordervector.cpp in Sources */,
A7E9B95A12D37EC400DA6239 /* sharedsobs.cpp in Sources */,
48B44EEE1FB5006500789C45 /* currentfile.cpp in Sources */,
A7E9B95B12D37EC400DA6239 /* sharedsobscollectsummary.cpp in Sources */,
A7E9B95C12D37EC400DA6239 /* sharedsorabund.cpp in Sources */,
A7E9B95D12D37EC400DA6239 /* sharedsorclass.cpp in Sources */,
A7E9B95E12D37EC400DA6239 /* sharedsorest.cpp in Sources */,
48B01D2920163594006BE140 /* clusterfitcommand.cpp in Sources */,
A7E9B95F12D37EC400DA6239 /* sharedthetan.cpp in Sources */,
A7E9B96012D37EC400DA6239 /* sharedthetayc.cpp in Sources */,
A7E9B96212D37EC400DA6239 /* shen.cpp in Sources */,
A7E9B96312D37EC400DA6239 /* shhhercommand.cpp in Sources */,
A7E9B96412D37EC400DA6239 /* simpson.cpp in Sources */,
A7E9B96512D37EC400DA6239 /* simpsoneven.cpp in Sources */,
A7E9B96612D37EC400DA6239 /* singlelinkage.cpp in Sources */,
A7E9B96712D37EC400DA6239 /* slayer.cpp in Sources */,
A7E9B96812D37EC400DA6239 /* slibshuff.cpp in Sources */,
A7E9B96912D37EC400DA6239 /* smithwilson.cpp in Sources */,
A7E9B96A12D37EC400DA6239 /* soergel.cpp in Sources */,
A7E9B96B12D37EC400DA6239 /* solow.cpp in Sources */,
A7E9B96C12D37EC400DA6239 /* sparsematrix.cpp in Sources */,
487C5A871AB88B93002AF48A /* mimarksattributescommand.cpp in Sources */,
A7E9B96D12D37EC400DA6239 /* spearman.cpp in Sources */,
48705AC519BE32C50075E977 /* oligos.cpp in Sources */,
A7E9B96E12D37EC400DA6239 /* speciesprofile.cpp in Sources */,
A7E9B96F12D37EC400DA6239 /* splitabundcommand.cpp in Sources */,
A7E9B97012D37EC400DA6239 /* splitgroupscommand.cpp in Sources */,
A7E9B97112D37EC400DA6239 /* splitmatrix.cpp in Sources */,
A7E9B97212D37EC400DA6239 /* structchi2.cpp in Sources */,
A7E9B97312D37EC400DA6239 /* structchord.cpp in Sources */,
A7E9B97412D37EC400DA6239 /* structeuclidean.cpp in Sources */,
A7E9B97512D37EC400DA6239 /* structkulczynski.cpp in Sources */,
48BDDA711EC9D31400F0F6C0 /* sharedrabundvectors.hpp in Sources */,
A7E9B97612D37EC400DA6239 /* structpearson.cpp in Sources */,
48E544411E9C292900FF6AB8 /* mcc.cpp in Sources */,
A7E9B97712D37EC400DA6239 /* subsamplecommand.cpp in Sources */,
A7E9B97812D37EC400DA6239 /* suffixdb.cpp in Sources */,
A7E9B97912D37EC400DA6239 /* suffixnodes.cpp in Sources */,
A7E9B97A12D37EC400DA6239 /* suffixtree.cpp in Sources */,
A7E9B97B12D37EC400DA6239 /* summarycommand.cpp in Sources */,
48E544511E9C2CFD00FF6AB8 /* tp.cpp in Sources */,
48D36FC924C1EAB0001A0FDC /* (null) in Sources */,
A7E9B97C12D37EC400DA6239 /* summarysharedcommand.cpp in Sources */,
A7E9B97D12D37EC400DA6239 /* systemcommand.cpp in Sources */,
48C51DF31A793EFE004ECDF1 /* kmeralign.cpp in Sources */,
A7E9B97E12D37EC400DA6239 /* taxonomyequalizer.cpp in Sources */,
A7E9B97F12D37EC400DA6239 /* tree.cpp in Sources */,
A7E9B98012D37EC400DA6239 /* treesharedcommand.cpp in Sources */,
A7E9B98112D37EC400DA6239 /* treemap.cpp in Sources */,
4889EA221E8962D50054E0BB /* summary.cpp in Sources */,
A7E9B98212D37EC400DA6239 /* treenode.cpp in Sources */,
A7E9B98312D37EC400DA6239 /* trimflowscommand.cpp in Sources */,
A7E9B98412D37EC400DA6239 /* trimseqscommand.cpp in Sources */,
A7E9B98512D37EC400DA6239 /* unifracunweightedcommand.cpp in Sources */,
A7E9B98612D37EC400DA6239 /* unifracweightedcommand.cpp in Sources */,
A7E9B98712D37EC400DA6239 /* unweighted.cpp in Sources */,
A7E9B98812D37EC400DA6239 /* uvest.cpp in Sources */,
A7E9B98912D37EC400DA6239 /* validcalculator.cpp in Sources */,
48E544591E9C2E6500FF6AB8 /* fp.cpp in Sources */,
A7E9B98A12D37EC400DA6239 /* validparameter.cpp in Sources */,
A7E9B98B12D37EC400DA6239 /* venn.cpp in Sources */,
48ED1E7D235E1BB4003E66F7 /* interactengine.cpp in Sources */,
484976E32255412400F3A291 /* igabundance.cpp in Sources */,
A7E9B98C12D37EC400DA6239 /* venncommand.cpp in Sources */,
A7E9B98D12D37EC400DA6239 /* weighted.cpp in Sources */,
A7E9B98E12D37EC400DA6239 /* weightedlinkage.cpp in Sources */,
A7E9B98F12D37EC400DA6239 /* whittaker.cpp in Sources */,
A70332B712D3A13400761E33 /* Makefile in Sources */,
A7FC480E12D788F20055BC5C /* linearalgebra.cpp in Sources */,
A7FC486712D795D60055BC5C /* pcacommand.cpp in Sources */,
A713EBAC12DC7613000092AC /* readphylipvector.cpp in Sources */,
A713EBED12DC7C5E000092AC /* nmdscommand.cpp in Sources */,
A727864412E9E28C00F86ABA /* removerarecommand.cpp in Sources */,
A71FE12C12EDF72400963CA7 /* mergegroupscommand.cpp in Sources */,
7E6BE10A12F710D8007ADDBE /* refchimeratest.cpp in Sources */,
48E544551E9C2DF500FF6AB8 /* tn.cpp in Sources */,
4815BEC922970FA700677EE2 /* sishift.cpp in Sources */,
A7A61F2D130062E000E05B6B /* amovacommand.cpp in Sources */,
A75790591301749D00A30DAB /* homovacommand.cpp in Sources */,
481623E21B56A2DB004C60B7 /* pcrseqscommand.cpp in Sources */,
484976E72256799100F3A291 /* diversityestimatorcommand.cpp in Sources */,
A7FA10021302E097003860FE /* mantelcommand.cpp in Sources */,
A799F5B91309A3E000AEEFA0 /* makefastqcommand.cpp in Sources */,
A71CB160130B04A2001E7287 /* anosimcommand.cpp in Sources */,
A7FE7C401330EA1000F7B327 /* getcurrentcommand.cpp in Sources */,
A7FE7E6D13311EA400F7B327 /* setcurrentcommand.cpp in Sources */,
A74D36B8137DAFAA00332B0C /* chimerauchimecommand.cpp in Sources */,
A77A221F139001B600B0BE70 /* deuniquetreecommand.cpp in Sources */,
A7730EFF13967241007433A3 /* countseqscommand.cpp in Sources */,
A73DDC3813C4BF64006AAE38 /* mothurmetastats.cpp in Sources */,
48E7E0A62278AD4800B74910 /* diversityutils.cpp in Sources */,
A79234D713C74BF6002B08E2 /* mothurfisher.cpp in Sources */,
A795840D13F13CD900F201D5 /* countgroupscommand.cpp in Sources */,
A7FF19F2140FFDA500AD216D /* trimoligos.cpp in Sources */,
A7F9F5CF141A5E500032F693 /* sequenceparser.cpp in Sources */,
48E544611E9C2FB800FF6AB8 /* fpfn.cpp in Sources */,
A7FFB558142CA02C004884F2 /* summarytaxcommand.cpp in Sources */,
A7BF221414587886000AD524 /* myPerseus.cpp in Sources */,
A7BF2232145879B2000AD524 /* chimeraperseuscommand.cpp in Sources */,
A774101414695AF60098E6AC /* shhhseqscommand.cpp in Sources */,
A774104814696F320098E6AC /* myseqdist.cpp in Sources */,
835FE03E19F00A4D005AA754 /* svm.cpp in Sources */,
48ED1E8523689DE8003E66F7 /* srainfocommand.cpp in Sources */,
A77410F614697C300098E6AC /* seqnoise.cpp in Sources */,
A754149714840CF7005850D1 /* summaryqualcommand.cpp in Sources */,
48705AC619BE32C50075E977 /* mergesfffilecommand.cpp in Sources */,
48E544491E9C2BE100FF6AB8 /* specificity.cpp in Sources */,
481E40DB244DFF5A0059C925 /* onegapignore.cpp in Sources */,
A7A3C8C914D041AD00B1BFBE /* otuassociationcommand.cpp in Sources */,
A7A32DAA14DC43B00001D2E5 /* sortseqscommand.cpp in Sources */,
48F1C16A23D78D7B0034DAAF /* sharedclrvectors.cpp in Sources */,
A7EEB0F514F29BFE00344B83 /* classifytreecommand.cpp in Sources */,
48C51DF01A76B888004ECDF1 /* fastqread.cpp in Sources */,
A7C3DC0B14FE457500FE1924 /* cooccurrencecommand.cpp in Sources */,
A7C3DC0F14FE469500FE1924 /* trialSwap2.cpp in Sources */,
A77EBD2F1523709100ED407C /* createdatabasecommand.cpp in Sources */,
A7876A26152A017C00A0AE86 /* subsample.cpp in Sources */,
A7D755DA1535F679009BF21A /* treereader.cpp in Sources */,
48998B69242E785100DBD0A9 /* onegapdist.cpp in Sources */,
A724D2B7153C8628000A826F /* makebiomcommand.cpp in Sources */,
219C1DE01552C4BD004209F9 /* newcommandtemplate.cpp in Sources */,
219C1DE41559BCCF004209F9 /* getcoremicrobiomecommand.cpp in Sources */,
A7A0671A1562946F0095C8C5 /* listotuscommand.cpp in Sources */,
A7A0671F1562AC3E0095C8C5 /* makecontigscommand.cpp in Sources */,
A70056E6156A93D000924A2D /* getotuscommand.cpp in Sources */,
A70056EB156AB6E500924A2D /* removeotuscommand.cpp in Sources */,
A74D59A4159A1E2000043046 /* counttable.cpp in Sources */,
48E5447C1E9D3F0400FF6AB8 /* fdr.cpp in Sources */,
484976DF22552E0B00F3A291 /* erarefaction.cpp in Sources */,
A7E0243D15B4520A00A5F046 /* sparsedistancematrix.cpp in Sources */,
481E40E3244F6A050059C925 /* eachgapdist.cpp in Sources */,
A741FAD215D1688E0067BCC5 /* sequencecountparser.cpp in Sources */,
A7C7DAB915DA758B0059B0CF /* sffmultiplecommand.cpp in Sources */,
835FE03D19F00640005AA754 /* classifysvmsharedcommand.cpp in Sources */,
48E5444D1E9C2C8F00FF6AB8 /* tptn.cpp in Sources */,
4815BEB4228B371E00677EE2 /* lnshift.cpp in Sources */,
A721AB6A161C570F009860A1 /* alignnode.cpp in Sources */,
A721AB6B161C570F009860A1 /* aligntree.cpp in Sources */,
A721AB71161C572A009860A1 /* kmernode.cpp in Sources */,
48CF76F021BEBDD300B2FB5C /* mergeotuscommand.cpp in Sources */,
A721AB72161C572A009860A1 /* kmertree.cpp in Sources */,
A721AB77161C573B009860A1 /* taxonomynode.cpp in Sources */,
A7496D2E167B531B00CC7D7C /* kruskalwalliscommand.cpp in Sources */,
A79EEF8616971D4A0006DEC1 /* filtersharedcommand.cpp in Sources */,
A74C06E916A9C0A9008390A3 /* primerdesigncommand.cpp in Sources */,
48576EA11D05DBC600BBC9C0 /* averagelinkage.cpp in Sources */,
A7128B1D16B7002A00723BE4 /* getdistscommand.cpp in Sources */,
4809ECA522831A5E00B4D0E5 /* lnabundance.cpp in Sources */,
A7B0231516B8244C006BA09E /* removedistscommand.cpp in Sources */,
A799314B16CBD0CD0017E888 /* mergetaxsummarycommand.cpp in Sources */,
A7548FAD17142EBC00B1F05A /* getmetacommunitycommand.cpp in Sources */,
A7548FB0171440ED00B1F05A /* qFinderDMM.cpp in Sources */,
F4A86713268F5CCE0010479A /* kimura.cpp in Sources */,
A77B7185173D2240002163C2 /* sparcccommand.cpp in Sources */,
4815BEB8228DD18400677EE2 /* lsabundance.cpp in Sources */,
485B0E0E1F27C40500CA5F57 /* sharedrabundfloatvector.cpp in Sources */,
48E7E0A32278A21B00B74910 /* metrolognormal.cpp in Sources */,
A77B718B173D40E5002163C2 /* calcsparcc.cpp in Sources */,
A7E6F69E17427D06006775E2 /* makelookupcommand.cpp in Sources */,
A7CFA4311755401800D9ED4D /* renameseqscommand.cpp in Sources */,
A741744C175CD9B1007DF49B /* makelefsecommand.cpp in Sources */,
A7190B221768E0DF00A9AFA6 /* lefsecommand.cpp in Sources */,
A77916E8176F7F7600EEFE18 /* designmap.cpp in Sources */,
A7D9378A17B146B5001E90B0 /* wilcox.cpp in Sources */,
A747EC71181EA0F900345732 /* sracommand.cpp in Sources */,
A7132EB3184E792700AAA402 /* communitytype.cpp in Sources */,
A7D395C4184FA3A200A350D7 /* kmeans.cpp in Sources */,
A7222D731856277C0055A993 /* sharedjsd.cpp in Sources */,
4809EC98227B405700B4D0E5 /* metrologstudent.cpp in Sources */,
A7B093C018579F0400843CD1 /* pam.cpp in Sources */,
48E544781E9D3CE400FF6AB8 /* npv.cpp in Sources */,
A7A09B1018773C0E00FAA081 /* shannonrange.cpp in Sources */,
);
runOnlyForDeploymentPostprocessing = 0;
};
/* End PBXSourcesBuildPhase section */
/* Begin XCBuildConfiguration section */
1DEB928608733DD80010E9CD /* Debug */ = {
isa = XCBuildConfiguration;
buildSettings = {
ALWAYS_SEARCH_USER_PATHS = YES;
CLANG_CXX_LANGUAGE_STANDARD = "c++0x";
CLANG_CXX_LIBRARY = "libc++";
CLANG_ENABLE_OBJC_WEAK = YES;
CLANG_WARN_CXX0X_EXTENSIONS = YES;
"CLANG_WARN_CXX0X_EXTENSIONS[arch=*]" = NO;
CLANG_WARN_UNREACHABLE_CODE = YES;
COPY_PHASE_STRIP = NO;
DEPLOYMENT_LOCATION = YES;
DSTROOT = "";
"DSTROOT[sdk=*]" = "";
"DYLIB_CURRENT_VERSION[sdk=*]" = "";
"FRAMEWORK_SEARCH_PATHS[arch=*]" = "${SRCROOT}/mothur_resources_14.6/libs";
GCC_C_LANGUAGE_STANDARD = "compiler-default";
GCC_DYNAMIC_NO_PIC = NO;
GCC_MODEL_TUNING = G5;
GCC_OPTIMIZATION_LEVEL = 0;
GCC_PREPROCESSOR_DEFINITIONS = (
"MOTHUR_FILES=\"\\\"/Users/swestcott/Desktop/data/;\\\"\"",
"VERSION=\"\\\"1.48.3\\\"\"",
"MOTHUR_TOOLS=\"\\\"/Users/swestcott/Desktop/mothur_exe/;\\\"\"",
"LOGFILE_NAME=\"\\\"./mothur.logfile\\\"\"",
);
GCC_VERSION = "";
GCC_WARN_ABOUT_MISSING_PROTOTYPES = NO;
GCC_WARN_UNINITIALIZED_AUTOS = NO;
GCC_WARN_UNUSED_FUNCTION = YES;
INSTALL_PATH = "${SRCROOT}";
"INSTALL_PATH[sdk=*]" = "";
LIBRARY_SEARCH_PATHS = "${SRCROOT}/mothur_resources_14.6/libs";
"LIBRARY_SEARCH_PATHS[arch=*]" = "";
MACOSX_DEPLOYMENT_TARGET = 10.14;
ONLY_ACTIVE_ARCH = YES;
OTHER_LDFLAGS = (
"-lreadline",
"${SRCROOT}/mothur_resources_14.6/libs/libz.a",
"${SRCROOT}/mothur_resources_14.6/libs/libboost_filesystem.a",
"${SRCROOT}/mothur_resources_14.6/libs/libboost_iostreams.a",
"${SRCROOT}/mothur_resources_14.6/libs/libgsl.a",
"${SRCROOT}/mothur_resources_14.6/libs/libgslcblas.a",
"${SRCROOT}/mothur_resources_14.6/libs/libhdf5_hl_cpp.a",
"${SRCROOT}/mothur_resources_14.6/libs/libhdf5_cpp.a",
"${SRCROOT}/mothur_resources_14.6/libs/libhdf5_hl.a",
"${SRCROOT}/mothur_resources_14.6/libs/libhdf5.a",
);
PRELINK_LIBS = "";
PRODUCT_NAME = mothur;
SDKROOT = macosx;
SKIP_INSTALL = NO;
USER_HEADER_SEARCH_PATHS = "${SRCROOT}/mothur_resources_14.6/headers";
"USER_HEADER_SEARCH_PATHS[arch=*]" = "${SRCROOT}/mothur_resources_14.6/headers";
};
name = Debug;
};
1DEB928708733DD80010E9CD /* Release */ = {
isa = XCBuildConfiguration;
buildSettings = {
ALWAYS_SEARCH_USER_PATHS = YES;
CLANG_CXX_LANGUAGE_STANDARD = "c++0x";
CLANG_CXX_LIBRARY = "libc++";
CLANG_ENABLE_OBJC_WEAK = YES;
CLANG_WARN_CXX0X_EXTENSIONS = YES;
CLANG_WARN_UNREACHABLE_CODE = YES;
DEBUG_INFORMATION_FORMAT = "dwarf-with-dsym";
DEPLOYMENT_LOCATION = YES;
DSTROOT = "";
"FRAMEWORK_SEARCH_PATHS[arch=*]" = "${SRCROOT}/mothur_resources_14.6/libs";
GCC_C_LANGUAGE_STANDARD = "compiler-default";
GCC_MODEL_TUNING = G5;
GCC_OPTIMIZATION_LEVEL = 0;
GCC_PREPROCESSOR_DEFINITIONS = (
"MOTHUR_FILES=\"\\\"/Users/swestcott/Desktop/data\\\"\"",
"VERSION=\"\\\"1.48.2\\\"\"",
"LOGFILE_NAME=\"\\\"./mothur.logfile\\\"\"",
"MOTHUR_TOOLS=\"\\\"/Users/swestcott/desktop/mothur_exe\\\"\"",
);
GCC_VERSION = "";
GCC_WARN_ABOUT_MISSING_PROTOTYPES = NO;
GCC_WARN_UNINITIALIZED_AUTOS = NO;
GCC_WARN_UNUSED_VALUE = YES;
INSTALL_PATH = "${SRCROOT}";
"INSTALL_PATH[sdk=*]" = "";
LIBRARY_SEARCH_PATHS = "${SRCROOT}/mothur_resources_14.6/libs";
"LIBRARY_SEARCH_PATHS[arch=*]" = "";
MACOSX_DEPLOYMENT_TARGET = 10.14;
ONLY_ACTIVE_ARCH = YES;
OTHER_LDFLAGS = (
"-lreadline",
"${SRCROOT}/mothur_resources_14.6/libs/libz.a",
"${SRCROOT}/mothur_resources_14.6/libs/libboost_filesystem.a",
"${SRCROOT}/mothur_resources_14.6/libs/libboost_iostreams.a",
"${SRCROOT}/mothur_resources_14.6/libs/libgsl.a",
"${SRCROOT}/mothur_resources_14.6/libs/libgslcblas.a",
"${SRCROOT}/mothur_resources_14.6/libs/libhdf5_hl_cpp.a",
"${SRCROOT}/mothur_resources_14.6/libs/libhdf5_cpp.a",
"${SRCROOT}/mothur_resources_14.6/libs/libhdf5_hl.a",
"${SRCROOT}/mothur_resources_14.6/libs/libhdf5.a",
);
PRELINK_LIBS = "";
PRODUCT_NAME = mothur;
SDKROOT = macosx;
SKIP_INSTALL = NO;
USER_HEADER_SEARCH_PATHS = "${SRCROOT}/mothur_resources_14.6/headers";
"USER_HEADER_SEARCH_PATHS[arch=*]" = "${SRCROOT}/mothur_resources_14.6/headers";
"VALID_ARCHS[sdk=*]" = "i386 x86_64";
};
name = Release;
};
1DEB928A08733DD80010E9CD /* Debug */ = {
isa = XCBuildConfiguration;
buildSettings = {
CLANG_ADDRESS_SANITIZER_CONTAINER_OVERFLOW = YES;
CLANG_ANALYZER_LOCALIZABILITY_NONLOCALIZED = YES;
CLANG_CXX_LANGUAGE_STANDARD = "compiler-default";
CLANG_CXX_LIBRARY = "libc++";
CLANG_WARN_BLOCK_CAPTURE_AUTORELEASING = YES;
CLANG_WARN_BOOL_CONVERSION = YES;
CLANG_WARN_COMMA = YES;
CLANG_WARN_CONSTANT_CONVERSION = YES;
CLANG_WARN_CXX0X_EXTENSIONS = YES;
CLANG_WARN_DEPRECATED_OBJC_IMPLEMENTATIONS = YES;
CLANG_WARN_EMPTY_BODY = YES;
CLANG_WARN_ENUM_CONVERSION = YES;
CLANG_WARN_INFINITE_RECURSION = YES;
CLANG_WARN_INT_CONVERSION = YES;
CLANG_WARN_NON_LITERAL_NULL_CONVERSION = YES;
CLANG_WARN_OBJC_IMPLICIT_RETAIN_SELF = YES;
CLANG_WARN_OBJC_LITERAL_CONVERSION = YES;
CLANG_WARN_RANGE_LOOP_ANALYSIS = YES;
CLANG_WARN_STRICT_PROTOTYPES = YES;
CLANG_WARN_SUSPICIOUS_MOVE = YES;
CLANG_WARN_UNREACHABLE_CODE = YES;
CLANG_WARN__DUPLICATE_METHOD_MATCH = YES;
DEPLOYMENT_LOCATION = NO;
ENABLE_STRICT_OBJC_MSGSEND = YES;
ENABLE_TESTABILITY = YES;
GCC_C_LANGUAGE_STANDARD = "compiler-default";
GCC_ENABLE_SSE3_EXTENSIONS = NO;
GCC_ENABLE_SSE41_EXTENSIONS = NO;
GCC_ENABLE_SSE42_EXTENSIONS = NO;
GCC_NO_COMMON_BLOCKS = YES;
GCC_OPTIMIZATION_LEVEL = 0;
GCC_PREPROCESSOR_DEFINITIONS = (
"MOTHUR_FILES=\"\\\"/Users/swestcott/Desktop/release\\\"\"",
"VERSION=\"\\\"1.47.0\\\"\"",
"LOGFILE_NAME=\"\\\"./mothur.logfile\\\"\"",
"MOTHUR_TOOLS=\"\\\"/Users/swestcott/desktop/mothur/tools/\\\"\"",
);
GCC_VERSION = "";
"GCC_VERSION[arch=*]" = "";
GCC_WARN_64_TO_32_BIT_CONVERSION = YES;
GCC_WARN_ABOUT_MISSING_NEWLINE = YES;
GCC_WARN_ABOUT_MISSING_PROTOTYPES = NO;
GCC_WARN_ABOUT_RETURN_TYPE = YES;
GCC_WARN_UNDECLARED_SELECTOR = YES;
GCC_WARN_UNINITIALIZED_AUTOS = YES;
GCC_WARN_UNUSED_FUNCTION = YES;
GCC_WARN_UNUSED_VARIABLE = YES;
HEADER_SEARCH_PATHS = (
"<Multiple",
"values>",
"${SRCROOT}/mothur_resources_10.14/headers",
);
"HEADER_SEARCH_PATHS[arch=*]" = (
"$(inherited)",
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/include,
/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/,
);
INSTALL_PATH = "${SRCROOT}";
LIBRARY_SEARCH_PATHS = "${SRCROOT}/mothur_resources_10.14/libs/";
"LIBRARY_SEARCH_PATHS[arch=*]" = "";
MACH_O_TYPE = mh_execute;
MACOSX_DEPLOYMENT_TARGET = 11.0;
ONLY_ACTIVE_ARCH = YES;
OTHER_CPLUSPLUSFLAGS = (
"-DUNIT_TEST",
"-DUSE_BOOST",
"-DUSE_READLINE",
"$(OTHER_CFLAGS)",
"-DUSE_GSL",
"-DUSE_HDF5",
);
OTHER_LDFLAGS = (
"${SRCROOT}/mothur_resources_10.14/libs/libboost_filesystem.a",
"${SRCROOT}/mothur_resources_10.14/libs/libboost_iostreams.a",
"${SRCROOT}/mothur_resources_10.14/libs/libgsl.a",
"${SRCROOT}/mothur_resources_10.14/libs/libgslcblas.a",
"${SRCROOT}/mothur_resources_10.14/libs/libz.a",
"${SRCROOT}/mothur_resources_10.14/libs/libhdf5_hl_cpp.a",
"${SRCROOT}/mothur_resources_10.14/libs/libhdf5_cpp.a",
"${SRCROOT}/mothur_resources_10.14/libs/libhdf5_hl.a",
"${SRCROOT}/mothur_resources_10.14/libs/libhdf5.a",
"-libreadline",
);
SDKROOT = macosx;
SKIP_INSTALL = NO;
USER_HEADER_SEARCH_PATHS = "${SRCROOT}/mothur_resources_10.14/headers";
"USER_HEADER_SEARCH_PATHS[arch=*]" = "";
};
name = Debug;
};
1DEB928B08733DD80010E9CD /* Release */ = {
isa = XCBuildConfiguration;
buildSettings = {
CLANG_ADDRESS_SANITIZER_CONTAINER_OVERFLOW = YES;
CLANG_ANALYZER_LOCALIZABILITY_NONLOCALIZED = YES;
CLANG_CXX_LANGUAGE_STANDARD = "compiler-default";
CLANG_CXX_LIBRARY = "libc++";
CLANG_WARN_BLOCK_CAPTURE_AUTORELEASING = YES;
CLANG_WARN_BOOL_CONVERSION = YES;
CLANG_WARN_COMMA = YES;
CLANG_WARN_CONSTANT_CONVERSION = YES;
CLANG_WARN_CXX0X_EXTENSIONS = YES;
CLANG_WARN_DEPRECATED_OBJC_IMPLEMENTATIONS = YES;
CLANG_WARN_EMPTY_BODY = YES;
CLANG_WARN_ENUM_CONVERSION = YES;
CLANG_WARN_INFINITE_RECURSION = YES;
CLANG_WARN_INT_CONVERSION = YES;
CLANG_WARN_NON_LITERAL_NULL_CONVERSION = YES;
CLANG_WARN_OBJC_IMPLICIT_RETAIN_SELF = YES;
CLANG_WARN_OBJC_LITERAL_CONVERSION = YES;
CLANG_WARN_RANGE_LOOP_ANALYSIS = YES;
CLANG_WARN_STRICT_PROTOTYPES = YES;
CLANG_WARN_SUSPICIOUS_MOVE = YES;
CLANG_WARN_UNREACHABLE_CODE = YES;
CLANG_WARN__DUPLICATE_METHOD_MATCH = YES;
DEPLOYMENT_LOCATION = NO;
ENABLE_STRICT_OBJC_MSGSEND = YES;
GCC_C_LANGUAGE_STANDARD = "compiler-default";
GCC_GENERATE_DEBUGGING_SYMBOLS = NO;
GCC_MODEL_TUNING = "";
GCC_NO_COMMON_BLOCKS = YES;
GCC_OPTIMIZATION_LEVEL = 0;
GCC_PREPROCESSOR_DEFINITIONS = (
"VERSION=\"\\\"1.47.0\\\"\"",
"MOTHUR_FILES=\"\\\"/Users/swestcott/Desktop/release\\\"\"",
"LOGFILE_NAME=\"\\\"./mothur.logfile\\\"\"",
"MOTHUR_TOOLS=\"\\\"/Users/swestcott/desktop/mothur/tools/\\\"\"",
);
GCC_VERSION = "";
GCC_WARN_64_TO_32_BIT_CONVERSION = YES;
GCC_WARN_ABOUT_MISSING_NEWLINE = YES;
GCC_WARN_ABOUT_MISSING_PROTOTYPES = NO;
GCC_WARN_ABOUT_RETURN_TYPE = YES;
GCC_WARN_MISSING_PARENTHESES = YES;
GCC_WARN_MULTIPLE_DEFINITION_TYPES_FOR_SELECTOR = YES;
GCC_WARN_UNDECLARED_SELECTOR = YES;
GCC_WARN_UNINITIALIZED_AUTOS = YES;
GCC_WARN_UNUSED_FUNCTION = YES;
GCC_WARN_UNUSED_PARAMETER = YES;
GCC_WARN_UNUSED_VALUE = YES;
GCC_WARN_UNUSED_VARIABLE = YES;
HEADER_SEARCH_PATHS = (
"<Multiple",
"values>",
"${SRCROOT}/mothur_resources_10.14/headers",
);
"HEADER_SEARCH_PATHS[arch=*]" = (
"$(inherited)",
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/include,
/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/,
);
INSTALL_PATH = "${SRCROOT}";
LIBRARY_SEARCH_PATHS = "${SRCROOT}/mothur_resources_10.14/libs/";
"LIBRARY_SEARCH_PATHS[arch=*]" = "";
MACH_O_TYPE = mh_execute;
MACOSX_DEPLOYMENT_TARGET = 11.0;
OTHER_CPLUSPLUSFLAGS = (
"-DUSE_READLINE",
"-DUNIT_TEST",
"-DUSE_BOOST",
"$(OTHER_CFLAGS)",
"-DUSE_GSL",
"-DUSE_HDF5",
);
OTHER_LDFLAGS = (
"${SRCROOT}/mothur_resources_10.14/libs/libboost_filesystem.a",
"${SRCROOT}/mothur_resources_10.14/libs/libboost_iostreams.a",
"${SRCROOT}/mothur_resources_10.14/libs/libgsl.a",
"${SRCROOT}/mothur_resources_10.14/libs/libgslcblas.a",
"${SRCROOT}/mothur_resources_10.14/libs/libz.a",
"${SRCROOT}/mothur_resources_10.14/libs/libhdf5_hl_cpp.a",
"${SRCROOT}/mothur_resources_10.14/libs/libhdf5_cpp.a",
"${SRCROOT}/mothur_resources_10.14/libs/libhdf5_hl.a",
"${SRCROOT}/mothur_resources_10.14/libs/libhdf5.a",
"-libreadline",
);
SDKROOT = macosx;
SKIP_INSTALL = NO;
USER_HEADER_SEARCH_PATHS = "${SRCROOT}/mothur_resources_10.14/headers";
"USER_HEADER_SEARCH_PATHS[arch=*]" = "";
};
name = Release;
};
481FB51D1AC0A63E0076CFF3 /* Debug */ = {
isa = XCBuildConfiguration;
buildSettings = {
ALWAYS_SEARCH_USER_PATHS = YES;
CLANG_CXX_LANGUAGE_STANDARD = "c++0x";
CLANG_CXX_LIBRARY = "libc++";
CLANG_ENABLE_MODULES = YES;
CLANG_ENABLE_OBJC_ARC = YES;
CLANG_WARN_BOOL_CONVERSION = YES;
CLANG_WARN_CONSTANT_CONVERSION = YES;
CLANG_WARN_DIRECT_OBJC_ISA_USAGE = YES_ERROR;
CLANG_WARN_EMPTY_BODY = NO;
CLANG_WARN_ENUM_CONVERSION = NO;
CLANG_WARN_INT_CONVERSION = NO;
CLANG_WARN_OBJC_ROOT_CLASS = YES_ERROR;
CLANG_WARN__DUPLICATE_METHOD_MATCH = YES;
COPY_PHASE_STRIP = NO;
ENABLE_STRICT_OBJC_MSGSEND = YES;
FRAMEWORK_SEARCH_PATHS = "${SRCROOT}/mothur_resources/libs";
GCC_C_LANGUAGE_STANDARD = "compiler-default";
GCC_DYNAMIC_NO_PIC = NO;
GCC_OPTIMIZATION_LEVEL = 0;
GCC_PREPROCESSOR_DEFINITIONS = (
"DEBUG=1",
"$(inherited)",
);
GCC_SYMBOLS_PRIVATE_EXTERN = NO;
GCC_VERSION = com.apple.compilers.llvm.clang.1_0;
GCC_WARN_64_TO_32_BIT_CONVERSION = YES;
GCC_WARN_ABOUT_RETURN_TYPE = YES_ERROR;
GCC_WARN_UNDECLARED_SELECTOR = YES;
GCC_WARN_UNINITIALIZED_AUTOS = NO;
LIBRARY_SEARCH_PATHS = "${SRCROOT}/mothur_resources/libs";
"LIBRARY_SEARCH_PATHS[arch=*]" = /usr/local/lib/;
MACOSX_DEPLOYMENT_TARGET = 10.14;
MTL_ENABLE_DEBUG_INFO = YES;
ONLY_ACTIVE_ARCH = YES;
OTHER_LDFLAGS = (
"-lreadline",
"-lz",
);
PRODUCT_NAME = "$(TARGET_NAME)";
SDKROOT = macosx;
USER_HEADER_SEARCH_PATHS = "${PROJECT_DIR}/gtest /usr/local/include";
};
name = Debug;
};
481FB51E1AC0A63E0076CFF3 /* Release */ = {
isa = XCBuildConfiguration;
buildSettings = {
ALWAYS_SEARCH_USER_PATHS = YES;
CLANG_CXX_LANGUAGE_STANDARD = "c++0x";
CLANG_CXX_LIBRARY = "libc++";
CLANG_ENABLE_MODULES = YES;
CLANG_ENABLE_OBJC_ARC = YES;
CLANG_WARN_BOOL_CONVERSION = YES;
CLANG_WARN_CONSTANT_CONVERSION = YES;
CLANG_WARN_DIRECT_OBJC_ISA_USAGE = YES_ERROR;
CLANG_WARN_EMPTY_BODY = NO;
CLANG_WARN_ENUM_CONVERSION = NO;
CLANG_WARN_INT_CONVERSION = NO;
CLANG_WARN_OBJC_ROOT_CLASS = YES_ERROR;
CLANG_WARN__DUPLICATE_METHOD_MATCH = YES;
COPY_PHASE_STRIP = NO;
DEBUG_INFORMATION_FORMAT = "dwarf-with-dsym";
ENABLE_NS_ASSERTIONS = NO;
ENABLE_STRICT_OBJC_MSGSEND = YES;
FRAMEWORK_SEARCH_PATHS = "${SRCROOT}/mothur_resources/libs";
GCC_C_LANGUAGE_STANDARD = "compiler-default";
GCC_OPTIMIZATION_LEVEL = 0;
GCC_PREPROCESSOR_DEFINITIONS = (
"VERSION=\"\\\"1.40.5\\\"\"",
"RELEASE_DATE=\"\\\"06/20/2018\\\"\"",
);
GCC_VERSION = com.apple.compilers.llvm.clang.1_0;
GCC_WARN_64_TO_32_BIT_CONVERSION = YES;
GCC_WARN_ABOUT_RETURN_TYPE = YES_ERROR;
GCC_WARN_UNDECLARED_SELECTOR = YES;
GCC_WARN_UNINITIALIZED_AUTOS = NO;
LIBRARY_SEARCH_PATHS = "${SRCROOT}/mothur_resources/libs";
"LIBRARY_SEARCH_PATHS[arch=*]" = /usr/local/lib/;
MACOSX_DEPLOYMENT_TARGET = 10.14;
MTL_ENABLE_DEBUG_INFO = NO;
ONLY_ACTIVE_ARCH = YES;
OTHER_LDFLAGS = (
"-lreadline",
"-lz",
);
PRODUCT_NAME = "$(TARGET_NAME)";
SDKROOT = macosx;
USER_HEADER_SEARCH_PATHS = "$(TARGET_BUILD_DIR)/gtest /usr/local/include";
};
name = Release;
};
/* End XCBuildConfiguration section */
/* Begin XCConfigurationList section */
1DEB928508733DD80010E9CD /* Build configuration list for PBXNativeTarget "Mothur" */ = {
isa = XCConfigurationList;
buildConfigurations = (
1DEB928608733DD80010E9CD /* Debug */,
1DEB928708733DD80010E9CD /* Release */,
);
defaultConfigurationIsVisible = 0;
defaultConfigurationName = Debug;
};
1DEB928908733DD80010E9CD /* Build configuration list for PBXProject "Mothur" */ = {
isa = XCConfigurationList;
buildConfigurations = (
1DEB928A08733DD80010E9CD /* Debug */,
1DEB928B08733DD80010E9CD /* Release */,
);
defaultConfigurationIsVisible = 0;
defaultConfigurationName = Debug;
};
481FB51F1AC0A63E0076CFF3 /* Build configuration list for PBXNativeTarget "TestMothur" */ = {
isa = XCConfigurationList;
buildConfigurations = (
481FB51D1AC0A63E0076CFF3 /* Debug */,
481FB51E1AC0A63E0076CFF3 /* Release */,
);
defaultConfigurationIsVisible = 0;
defaultConfigurationName = Debug;
};
/* End XCConfigurationList section */
};
rootObject = 08FB7793FE84155DC02AAC07 /* Project object */;
}
|