1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
|
//
// qFinderDMM.h
// pds_dmm
//
// Created by Patrick Schloss on 11/8/12.
// Copyright (c) 2012 University of Michigan. All rights reserved.
//
#ifndef pds_dmm_qFinderDMM_h
#define pds_dmm_qFinderDMM_h
#include "communitytype.h"
/**************************************************************************************************/
class qFinderDMM : public CommunityTypeFinder {
public:
qFinderDMM(vector<vector<int> >, int);
void printFitData(ofstream&);
void printFitData(ostream&, double);
private:
void optimizeLambda();
void calculatePiK();
double negativeLogEvidenceLambdaPi(vector<double>&);
void negativeLogDerivEvidenceLambdaPi(vector<double>&, vector<double>&);
double getNegativeLogEvidence(vector<double>&, int);
double getNegativeLogLikelihood();
int lineMinimizeFletcher(vector<double>&, vector<double>&, double, double, double, double&, double&, vector<double>&, vector<double>&);
int bfgs2_Solver(vector<double>&);//, double, double);
};
/**************************************************************************************************/
#endif
|
