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#ifndef Mothur_treereader_h
#define Mothur_treereader_h
//
// treereader.h
// Mothur
//
// Created by Sarah Westcott on 4/11/12.
// Copyright (c) 2012 Schloss Lab. All rights reserved.
//
#include "mothurout.h"
#include "tree.h"
#include "counttable.h"
class TreeReader {
public:
TreeReader(string tf, string cf);
TreeReader(string tf, string gf, string nf);
~TreeReader() = default;
vector<Tree*> getTrees() { return trees; }
private:
MothurOut* m;
vector<Tree*> trees;
CountTable* ct;
vector<string> Treenames;
string treefile, groupfile, namefile, countfile;
bool readTrees();
int readNamesFile();
};
#endif
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