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/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
*
* Copyright (C) 2024, Northwestern University
*
* This program tests large requests made by each MPI process.
* Both buffer and fileview data types are noncontiguous.
*
* The local buffer datatype comprises NVARS arrays. Each array is 2D of size
* len x len. A gap of size GAP can be added at the end of each dimension to
* make the data type noncontiguous.
*
* The fileview of each process comprises NVARS subarrays. Each global array
* is 2D of size (len * psize[0]) x (len * psize[1]). Each local array is of
* size (len - GAP) x (len - GAP).
*
* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
#include <stdio.h>
#include <stdlib.h>
#include <unistd.h> /* getopt() */
#include <assert.h>
#include <mpi.h>
int Errors;
#define CHECK_MPI_ERROR(fname) \
if (err != MPI_SUCCESS) { \
int errorStringLen; \
char errorString[MPI_MAX_ERROR_STRING]; \
MPI_Error_string(err, errorString, &errorStringLen); \
Errors++;\
printf("Error at line %d when calling %s: %s\n",__LINE__,fname,errorString); \
}
#define CHECK_MPIO_ERROR(fname) { \
if (err != MPI_SUCCESS) { \
int errorStringLen; \
char errorString[MPI_MAX_ERROR_STRING]; \
MPI_Error_string(err, errorString, &errorStringLen); \
Errors++;\
printf("Error at line %d when calling %s: %s\n",__LINE__,fname,errorString); \
} \
else if (verbose) { \
if (rank == 0) \
printf("---- pass LINE %d of calling %s\n", __LINE__, fname); \
fflush(stdout); \
MPI_Barrier(MPI_COMM_WORLD); \
} \
}
#define LEN 2048
#define GAP 1
#define NVARS 1100
static void usage(char *argv0)
{
char *help =
"Usage: %s [-hvwr | -n num | -l num | -g num | file_name]\n"
" [-h] Print this help\n"
" [-v] verbose mode\n"
" [-w] performs write only (default: both write and read)\n"
" [-r] performs read only (default: both write and read)\n"
" [-n num] number of global variables (default: %d)\n"
" [-l num] length of dimensions X and Y each local variable (default: %d)\n"
" [-g num] gap at the end of each dimension (default: %d)\n"
" [file_name] output file name\n";
fprintf(stderr, help, argv0, NVARS, LEN, GAP);
}
/*----< main() >------------------------------------------------------------*/
int main(int argc, char **argv)
{
char filename[512];
size_t i, buf_len;
int ret, err, rank, verbose, omode, nprocs, do_read, do_write;
int nvars, len, gap, psize[2], gsize[2], count[2], start[2];
char *buf;
MPI_File fh;
MPI_Datatype subType, filetype, buftype;
MPI_Status status;
MPI_Offset fsize;
int *array_of_blocklengths;
MPI_Aint *array_of_displacements;
MPI_Datatype *array_of_types;
MPI_Request req[2];
MPI_Init(&argc, &argv);
MPI_Comm_rank(MPI_COMM_WORLD, &rank);
MPI_Comm_size(MPI_COMM_WORLD, &nprocs);
/* default values */
len = LEN;
gap = GAP;
nvars = NVARS;
do_write = 1;
do_read = 1;
verbose = 0;
/* get command-line arguments */
while ((ret = getopt(argc, argv, "hvwrn:l:g:")) != EOF)
switch (ret) {
case 'v':
verbose = 1;
break;
case 'w':
do_read = 0;
break;
case 'r':
do_write = 0;
break;
case 'n':
nvars = atoi(optarg);
break;
case 'l':
len = atoi(optarg);
break;
case 'g':
gap = atoi(optarg);
break;
case 'h':
default:
if (rank == 0)
usage(argv[0]);
MPI_Finalize();
return 1;
}
if (argv[optind] == NULL)
sprintf(filename, "%s.out", argv[0]);
else
snprintf(filename, 256, "%s", argv[optind]);
array_of_blocklengths = (int *) malloc(sizeof(int) * nvars);
array_of_displacements = (MPI_Aint *) malloc(sizeof(MPI_Aint) * nvars);
array_of_types = (MPI_Datatype *) malloc(sizeof(MPI_Datatype) * nvars);
/* Creates a division of processors in a cartesian grid */
psize[0] = psize[1] = 0;
err = MPI_Dims_create(nprocs, 2, psize);
CHECK_MPI_ERROR("MPI_Dims_create");
/* each 2D variable is of size gsizes[0] x gsizes[1] bytes */
gsize[0] = len * psize[0];
gsize[1] = len * psize[1];
/* set subarray offset and length */
start[0] = len * (rank / psize[1]);
start[1] = len * (rank % psize[1]);
count[0] = len - gap; /* -1 to create holes */
count[1] = len - gap;
fsize = (MPI_Offset) gsize[0] * gsize[1] * nvars - (len + 1);
if (verbose) {
buf_len = (size_t) nvars *(len - 1) * (len - 1);
if (rank == 0) {
printf("Output file name = %s\n", filename);
printf("nprocs=%d nvars=%d len=%d\n", nprocs, nvars, len);
printf("Expecting file size=%lld bytes (%.1f MB, %.1f GB)\n",
(long long) fsize * 2, (float) fsize * 2 / 1048576,
(float) fsize * 2 / 1073741824);
printf("Each global variable is of size %d bytes (%.1f MB)\n", gsize[0] * gsize[1],
(float) gsize[0] * gsize[1] / 1048576);
printf("Each process writes %zd bytes (%.1f MB, %.1f GB)\n", buf_len,
(float) buf_len / 1048576, (float) buf_len / 1073741824);
printf("** For nonblocking I/O test, the amount is twice\n");
printf("-------------------------------------------------------\n");
}
printf("rank %3d: gsize=%4d %4d start=%4d %4d count=%4d %4d\n", rank,
gsize[0], gsize[1], start[0], start[1], count[0], count[1]);
}
/* create 2D subarray datatype for fileview */
err = MPI_Type_create_subarray(2, gsize, count, start, MPI_ORDER_C, MPI_BYTE, &subType);
CHECK_MPI_ERROR("MPI_Type_create_subarray");
err = MPI_Type_commit(&subType);
CHECK_MPI_ERROR("MPI_Type_commit");
/* create a filetype by concatenating nvars subType */
for (i = 0; i < nvars; i++) {
array_of_blocklengths[i] = 1;
array_of_displacements[i] = gsize[0] * gsize[1] * i;
array_of_types[i] = subType;
}
err = MPI_Type_create_struct(nvars, array_of_blocklengths,
array_of_displacements, array_of_types, &filetype);
CHECK_MPI_ERROR("MPI_Type_create_struct");
err = MPI_Type_commit(&filetype);
CHECK_MPI_ERROR("MPI_Type_commit");
err = MPI_Type_free(&subType);
CHECK_MPI_ERROR("MPI_Type_free");
/* Create local buffer datatype: each 2D variable is of size len x len */
gsize[0] = len;
gsize[1] = len;
start[0] = 0;
start[1] = 0;
count[0] = len - gap; /* -1 to create holes */
count[1] = len - gap;
err = MPI_Type_create_subarray(2, gsize, count, start, MPI_ORDER_C, MPI_BYTE, &subType);
CHECK_MPI_ERROR("MPI_Type_create_subarray");
err = MPI_Type_commit(&subType);
CHECK_MPI_ERROR("MPI_Type_commit");
/* concatenate nvars subType into a buftype */
for (i = 0; i < nvars; i++) {
array_of_blocklengths[i] = 1;
array_of_displacements[i] = len * len * i;
array_of_types[i] = subType;
}
/* create a buftype by concatenating nvars subTypes */
err = MPI_Type_create_struct(nvars, array_of_blocklengths,
array_of_displacements, array_of_types, &buftype);
CHECK_MPI_ERROR("MPI_Type_create_struct");
err = MPI_Type_commit(&buftype);
CHECK_MPI_ERROR("MPI_Type_commit");
err = MPI_Type_free(&subType);
CHECK_MPI_ERROR("MPI_Type_free");
free(array_of_blocklengths);
free(array_of_displacements);
free(array_of_types);
/* allocate a local buffer */
buf_len = (size_t) nvars *len * len;
buf = (char *) malloc(buf_len);
for (i = 0; i < buf_len; i++)
buf[i] = (char) rank;
/* open to create a file */
omode = MPI_MODE_CREATE | MPI_MODE_RDWR;
err = MPI_File_open(MPI_COMM_WORLD, filename, omode, MPI_INFO_NULL, &fh);
CHECK_MPIO_ERROR("MPI_File_open");
/* set the file view */
err = MPI_File_set_view(fh, 0, MPI_BYTE, filetype, "native", MPI_INFO_NULL);
CHECK_MPIO_ERROR("MPI_File_set_view");
if (do_write) {
err = MPI_File_seek(fh, 0, MPI_SEEK_SET);
CHECK_MPIO_ERROR("MPI_File_seek");
/* MPI collective write */
err = MPI_File_write_all(fh, buf, 1, buftype, &status);
CHECK_MPIO_ERROR("MPI_File_write_all");
err = MPI_File_seek(fh, 0, MPI_SEEK_SET);
CHECK_MPIO_ERROR("MPI_File_seek");
/* MPI independent write */
err = MPI_File_write(fh, buf, 1, buftype, &status);
CHECK_MPIO_ERROR("MPI_File_write");
/* MPI nonblocking collective write */
char *buf2 = (char *) malloc(buf_len);
for (i = 0; i < buf_len; i++)
buf2[i] = (char) rank;
err = MPI_File_seek(fh, 0, MPI_SEEK_SET);
CHECK_MPIO_ERROR("MPI_File_seek");
err = MPI_File_iwrite_all(fh, buf, 1, buftype, &req[0]);
CHECK_MPIO_ERROR("MPI_File_iwrite_all 1");
err = MPI_File_iwrite_all(fh, buf2, 1, buftype, &req[1]);
CHECK_MPIO_ERROR("MPI_File_iwrite_all 2");
err = MPI_Waitall(2, req, MPI_STATUSES_IGNORE);
CHECK_MPIO_ERROR("MPI_Waitall");
/* MPI nonblocking independent write */
err = MPI_File_seek(fh, 0, MPI_SEEK_SET);
CHECK_MPIO_ERROR("MPI_File_seek");
err = MPI_File_iwrite(fh, buf, 1, buftype, &req[0]);
CHECK_MPIO_ERROR("MPI_File_iwrite 1");
err = MPI_File_iwrite(fh, buf2, 1, buftype, &req[1]);
CHECK_MPIO_ERROR("MPI_File_iwrite 2");
err = MPI_Waitall(2, req, MPI_STATUSES_IGNORE);
CHECK_MPIO_ERROR("MPI_Waitall");
free(buf2);
}
if (do_read) {
err = MPI_File_seek(fh, 0, MPI_SEEK_SET);
CHECK_MPIO_ERROR("MPI_File_seek");
/* MPI collective read */
err = MPI_File_read_all(fh, buf, 1, buftype, &status);
CHECK_MPIO_ERROR("MPI_File_read_all");
err = MPI_File_seek(fh, 0, MPI_SEEK_SET);
CHECK_MPIO_ERROR("MPI_File_seek");
/* MPI independent read */
err = MPI_File_read(fh, buf, 1, buftype, &status);
CHECK_MPIO_ERROR("MPI_File_read");
/* MPI nonblocking collective read */
char *buf2 = (char *) malloc(buf_len);
for (i = 0; i < buf_len; i++)
buf2[i] = (char) rank;
err = MPI_File_seek(fh, 0, MPI_SEEK_SET);
CHECK_MPIO_ERROR("MPI_File_seek");
err = MPI_File_iread_all(fh, buf, 1, buftype, &req[0]);
CHECK_MPIO_ERROR("MPI_File_iread_all 1");
err = MPI_File_iread_all(fh, buf2, 1, buftype, &req[1]);
CHECK_MPIO_ERROR("MPI_File_iread_all 2");
err = MPI_Waitall(2, req, MPI_STATUSES_IGNORE);
CHECK_MPIO_ERROR("MPI_Waitall");
/* MPI nonblocking independent read */
err = MPI_File_seek(fh, 0, MPI_SEEK_SET);
CHECK_MPIO_ERROR("MPI_File_seek");
err = MPI_File_iread(fh, buf, 1, buftype, &req[0]);
CHECK_MPIO_ERROR("MPI_File_iread 1");
err = MPI_File_iread(fh, buf2, 1, buftype, &req[1]);
CHECK_MPIO_ERROR("MPI_File_iread 2");
err = MPI_Waitall(2, req, MPI_STATUSES_IGNORE);
CHECK_MPIO_ERROR("MPI_Waitall");
free(buf2);
}
err = MPI_File_close(&fh);
CHECK_MPIO_ERROR("MPI_File_close");
free(buf);
err = MPI_Type_free(&filetype);
CHECK_MPI_ERROR("MPI_Type_free");
err = MPI_Type_free(&buftype);
CHECK_MPI_ERROR("MPI_Type_free");
if (Errors > 0) {
printf(" Found %d errors\n", Errors);
} else {
printf(" No Errors\n");
}
MPI_Finalize();
return 0;
}
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