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/// BvFiles.cpp
/**
*/
#include <wx/log.h>
#include <iostream>
#include <string>
#include "BvFiles.h"
#include "StringConvert.h"
using namespace jcs;
BvStc::~BvStc()
{
if (mFile.is_open()) {
mCloseFile();
}
}
///
/**
*/
int
BvStc::WriteStc(wxUint16 rows, wxUint16 cols,
std::vector <unsigned short>& v)
{
if (!mOpenFile(std::ios::out|std::ios::binary)) {
return 0;
}
mFile.write(reinterpret_cast<char*> (&rows), sizeof(rows));
mFile.write(reinterpret_cast<char*> (&cols), sizeof(cols));
mFile.write(reinterpret_cast<char*> (&v.front()), 2 * v.size());
mCloseFile();
if (verbose && !quiet) {
std::cout << "Wrote " << mFileName << std::endl;
}
return 1;
}
///
/**
*/
int
BvStc::mOpenFile(std::ios::openmode mode)
{
if (mFileName.empty()) {
return 0;
}
if (mFile.is_open()) {
mFile.close();
}
mFile.clear();
std::string filename = mFileName;
filename.append(".stc");
mFile.open(filename.c_str(), mode);
return mFile.good();
}
///
/**
*/
BvVmr::~BvVmr()
{
if (mFile.is_open()) {
mCloseFile();
}
}
///
/**
\param dim A vector of wxUint16
\param data A vector of wxUint8
\return 1
*/
int
BvVmr::WriteVmr(std::vector <wxUint16>& dim, std::vector <wxUint8>& data)
{
if (!mOpenFile(std::ios::out|std::ios::binary, ".vmr")) {
return 0;
}
mFile.write(reinterpret_cast<char*> (&dim.front()), 2 * dim.size());
mFile.write(reinterpret_cast<char*> (&data.front()), data.size());
mCloseFile();
if (verbose && !quiet) {
std::cout << "Wrote " << mFileName << std::endl;
}
return 1;
}
///
/**
\param dim A vector of wxUint16
\param data A vector of wxUint16
\return 0 or 1
*/
int
BvVmr::WriteV16(std::vector <wxUint16>& dim, std::vector <wxInt16>& data)
{
if (!mOpenFile(std::ios::out | std::ios::binary, ".v16")) {
return 0;
}
mFile.write(reinterpret_cast<char*> (&dim.front()), 2 * dim.size());
mFile.write(reinterpret_cast<char*> (&data.front()), 2 * data.size());
mCloseFile();
if (verbose && !quiet) {
std::cout << "Wrote " << mFileName << std::endl;
}
return 1;
}
///
/**
*/
// Suffix = ".vmr" or ".v16"
int
BvVmr::mOpenFile(std::ios::openmode mode, const char* suffix)
{
if (mFileName.empty()) {
return 0;
}
if (mFile.is_open()) {
mFile.close();
}
mFile.clear();
std::string filename = mFileName;
filename.append(suffix);
mFile.open(filename.c_str(), mode);
return mFile.good();
}
///
/**
*/
BvFmr::~BvFmr()
{
if (mFile.is_open()) {
mCloseFile();
}
}
///
/**
*/
int
BvFmr::mOpenFile(std::ios::openmode mode)
{
if (mFileName.empty()) {
return 0;
}
if (mFile.is_open()) {
mFile.close();
}
mFile.clear();
std::string filename = mFileName;
filename.append(".fmr");
mFile.open(filename.c_str(), mode);
return mFile.good();
}
///
/**
*/
void
BvFmr::WriteFmr(const FmrHeader& header)
{
if (!mOpenFile(std::ios::out)) {
wxLogError(_T("Cannot create file %s.fmr"),
mFileName.c_str());
return;
}
mFile << "FileVersion: 2\n";
mFile << "NrOfVolumes: " << header.volumes << "\n";
mFile << "NrOfSlices: " << header.slices << "\n";
mFile << "NrOfSkippedVolumes: " << header.skipVolumes << "\n";
mFile << "Prefix: " << header.prefix << "\n";
mFile << "TR: " << header.tr << "\n";
mFile << "InterSliceTime: " << header.interSliceT << "\n";
mFile << "TimeResolutionVerified: 1\n";
mFile << "ResolutionX: " << header.columns << "\n";
mFile << "ResolutionY: " << header.rows << "\n";
mFile << "LoadAMRFile: <none>\n";
mFile << "ShowAMRFile: 1\n";
mFile << "ImageIndex: 0\n";
mFile << "LayoutNColumns: " << header.layoutColumns << "\n";
mFile << "LayoutNRows: " << header.layoutRows << "\n";
mFile << "LayoutZoomLevel: 1\n";
mFile << "SegmentSize: 10\n";
mFile << "SegmentOffset: 0\n";
mFile << "ProtocolVersion: 2\n";
mFile << "ProtocolFile: <none>\n";
mFile.setf(std::ios_base::fixed);
mFile.precision(6);
mFile << "InplaneResolutionX: " << header.IpResX << "\n";
mFile << "InplaneResolutionY: " << header.IpResY << "\n";
mFile << "SliceThickness: " << header.sliceThickness << "\n";
mFile << "SliceGap: " << header.sliceGap << "\n";
mFile << "VoxelResolutionVerified: 1\n";
mCloseFile();
if (verbose && !quiet) {
std::cout << "Wrote " << mFileName << std::endl;
}
}
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