File: nii_label.pas

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unit nii_label;
{$IFDEF FPC}
{$mode delphi}
{$ENDIF}
interface
uses
{$IFNDEF FPC}
  gziod,
{$ELSE}
  gzio2,
{$ENDIF}
  dialogs,Classes, SysUtils, define_types;

procedure  createLutLabel (var lut: TLUT; lSaturationFrac: single);
procedure LoadLabels(lFileName: string; var lLabels: TStrRA; lOffset,lLength: integer);
procedure LoadLabelsTxt(lFileName: string; var lLabels: TStrRA);

implementation

procedure LoadLabelsCore(lInStr: string; var lLabels: TStrRA);
var
   lIndex,lPass,lMaxIndex,lPos,lLength: integer;
   lStr1: string;
   lCh: char;
begin
     lLabels := nil;
     lLength := length(lInStr);
     lMaxIndex := -1;
     for lPass := 1 to 2 do begin
      lPos := 1;
      if lPass = 2 then begin
        if lMaxIndex < 1 then
          exit;
        SetLength(lLabels,lMaxIndex+1);
        for lIndex := 0 to lMaxIndex do
          lLabels[lIndex] := '';
      end;
      while lPos <= lLength do begin
        lStr1 := '';
        repeat
	             lCh := lInStr[lPos]; inc(lPos);
	             if (lCh >= '0') and (lCh <= '9') then
		        lStr1 := lStr1 + lCh;
        until (lPos > lLength) or (lCh=kCR) or (lCh=UNIXeoln) or (((lCh=kTab)or (lCh=' ')) and (length(lStr1)>0));
        if (length(lStr1) > 0) and (lPos <= lLength) then begin
		      lIndex := strtoint(lStr1);
          if lPass = 1 then begin
                      if lIndex > lMaxIndex then
                         lMaxIndex := lIndex
          end else if lIndex >= 0 then begin //pass 2
            lStr1 := '';
		        repeat
              lCh := lInStr[lPos]; inc(lPos);
              if (lPos > lLength) or (lCh=kCR) or (lCh=UNIXeoln) {or (lCh=kTab) or (lCh=' ')} then
                  //
              else
                lStr1 := lStr1 + lCh;
            until (lPos > lLength) or (lCh=kCR) or (lCh=UNIXeoln) {or (lCh=kTab)or (lCh=' ')};
			      lLabels[lIndex] := lStr1;
		      end; //if pass 2
		    end; //if lStr1>0
	    end; //while not EOF
     end; //for each pass
end;

procedure LoadLabels(lFileName: string; var lLabels: TStrRA; lOffset,lLength: integer);
var
  f : file; // untyped file
  s : string; // string for reading a file
  sz: int64;
  ptr: bytep;
begin
  if GzExt(lFilename) then begin
    if (lLength < 1) then exit;
    SetLength(s, lLength);
    ptr :=  @s[1];
    UnGZip (lFileName,ptr, lOffset,lLength);
  end else begin
    AssignFile(f, lFileName);
    FileMode := fmOpenRead;
    reset(f, 1);
    if lOffset > 0 then
      seek(f, lOffset);
    if (lLength < 1) then
      sz := FileSize(f)-lOffset
    else
      sz := lLength;
    if (lOffset+sz) > FileSize(f) then
      exit;
    SetLength(s, sz);
    BlockRead(f, s[1], length(s));
    CloseFile(f);
    FileMode := fmOpenReadWrite;
   end;
   LoadLabelsCore(s, lLabels);
   //showmessage(lLabels[1]);
end;

procedure LoadLabelsTxt(lFileName: string; var lLabels: TStrRA);
//filename = 'all.nii' will read 'aal.txt'
var
   lLUTname: string;
begin
     lLabels := nil; //empty current labels
     lLUTname := changefileext(lFileName,'.txt');
     if not Fileexists(lLUTname) then begin
      lLUTname := ParseFileName(lFileName)+'.txt'; //file.nii.gz -> file.txt
      if not Fileexists(lLUTname) then
        exit;
     end;
     LoadLabels(lLUTname, lLabels,0,-1);
end;

procedure desaturateRGBA( var lRGBA: TRGBquad; frac: single);
var
  r,g,b: byte;
  y: single;
begin
  r := lRGBA.rgbRed;
  g := lRGBA.rgbGreen;
  b := lRGBA.rgbBlue;
  //convert RGB->YUV http://en.wikipedia.org/wiki/YUV
  y := 0.299 * r + 0.587 * g + 0.114 * b;
  r := round(y * (1-frac) + r * frac);
  g := round(y * (1-frac) + g * frac);
  b := round(y * (1-frac) + b * frac);
  lRGBA.rgbRed := r;
  lRGBA.rgbGreen := g;
  lRGBA.rgbBlue := b;
end;

function makeRGB(r,g,b: byte): TRGBquad;
begin
  result.rgbRed := r;
  result.rgbGreen := g;
  result.rgbBlue := b;
  result.rgbReserved := 64;
end;

procedure  createLutLabel (var lut: TLUT; lSaturationFrac: single); //lLUT: 0=gray,1=red,2=green,3=blue
var
  i:integer;
begin
  lut[0] := makeRGB(0,0,0);
  lut[0].rgbReserved:= 0;
  lut[1] := makeRGB(71,46,154);
  lut[2] := makeRGB(33,78,43);
  lut[3] := makeRGB(192,199,10);
  lut[4] := makeRGB(32,79,207);
  lut[5] := makeRGB(195,89,204);
  lut[6] := makeRGB(208,41,164);
  lut[7] := makeRGB(173,208,231);
  lut[8] := makeRGB(233,135,136);
  lut[9] := makeRGB(202,20,58);
  lut[10] := makeRGB(25,154,239);
  lut[11] := makeRGB(210,35,30);
  lut[12] := makeRGB(145,21,147);
  lut[13] := makeRGB(89,43,230);
  lut[14] := makeRGB(87,230,101);
  lut[15] := makeRGB(245,113,111);
  lut[16] := makeRGB(246,191,150);
  lut[17] := makeRGB(38,147,35);
  lut[18] := makeRGB(3,208,128);
  lut[19] := makeRGB(25,37,57);
  lut[20] := makeRGB(57,28,252);
  lut[21] := makeRGB(167,27,79);
  lut[22] := makeRGB(245,86,173);
  lut[23] := makeRGB(86,203,120);
  lut[24] := makeRGB(227,25,25);
  lut[25] := makeRGB(208,209,126);
  lut[26] := makeRGB(81,148,81);
  lut[27] := makeRGB(64,187,85);
  lut[28] := makeRGB(90,139,8);
  lut[29] := makeRGB(199,111,7);
  lut[30] := makeRGB(140,48,122);
  lut[31] := makeRGB(48,102,237);
  lut[32] := makeRGB(212,76,190);
  lut[33] := makeRGB(180,110,152);
  lut[34] := makeRGB(70,106,246);
  lut[35] := makeRGB(120,130,182);
  lut[36] := makeRGB(9,37,130);
  lut[37] := makeRGB(192,160,219);
  lut[38] := makeRGB(245,34,67);
  lut[39] := makeRGB(177,222,76);
  lut[40] := makeRGB(65,90,167);
  lut[41] := makeRGB(157,165,178);
  lut[42] := makeRGB(9,245,235);
  lut[43] := makeRGB(193,222,250);
  lut[44] := makeRGB(100,102,28);
  lut[45] := makeRGB(181,47,61);
  lut[46] := makeRGB(125,19,186);
  lut[47] := makeRGB(145,130,250);
  lut[48] := makeRGB(62,4,199);
  lut[49] := makeRGB(8,232,67);
  lut[50] := makeRGB(108,137,58);
  lut[51] := makeRGB(36,211,50);
  lut[52] := makeRGB(140,240,86);
  lut[53] := makeRGB(237,11,182);
  lut[54] := makeRGB(242,140,108);
  lut[55] := makeRGB(248,21,77);
  lut[56] := makeRGB(161,42,89);
  lut[57] := makeRGB(189,22,112);
  lut[58] := makeRGB(41,241,59);
  lut[59] := makeRGB(114,61,125);
  lut[60] := makeRGB(65,99,226);
  lut[61] := makeRGB(121,115,50);
  lut[62] := makeRGB(97,199,205);
  lut[63] := makeRGB(50,166,227);
  lut[64] := makeRGB(238,114,125);
  lut[65] := makeRGB(149,190,128);
  lut[66] := makeRGB(44,204,104);
  lut[67] := makeRGB(214,60,27);
  lut[68] := makeRGB(124,233,59);
  lut[69] := makeRGB(167,66,66);
  lut[70] := makeRGB(40,115,53);
  lut[71] := makeRGB(167,230,133);
  lut[72] := makeRGB(127,125,159);
  lut[73] := makeRGB(178,103,203);
  lut[74] := makeRGB(231,203,97);
  lut[75] := makeRGB(30,125,125);
  lut[76] := makeRGB(173,13,139);
  lut[77] := makeRGB(244,176,159);
  lut[78] := makeRGB(193,94,158);
  lut[79] := makeRGB(203,131,7);
  lut[80] := makeRGB(204,39,215);
  lut[81] := makeRGB(238,198,47);
  lut[82] := makeRGB(139,167,140);
  lut[83] := makeRGB(135,124,226);
  lut[84] := makeRGB(71,67,223);
  lut[85] := makeRGB(234,175,231);
  lut[86] := makeRGB(234,254,44);
  lut[87] := makeRGB(217,1,110);
  lut[88] := makeRGB(66,15,184);
  lut[89] := makeRGB(14,198,61);
  lut[90] := makeRGB(129,62,233);
  lut[91] := makeRGB(19,237,47);
  lut[92] := makeRGB(97,159,67);
  lut[93] := makeRGB(165,31,148);
  lut[94] := makeRGB(112,218,22);
  lut[95] := makeRGB(244,58,120);
  lut[96] := makeRGB(35,244,173);
  lut[97] := makeRGB(73,47,156);
  lut[98] := makeRGB(192,61,117);
  lut[99] := makeRGB(12,67,181);
  lut[100] := makeRGB(149,94,94);
  for i := 1 to 100 do
      lut[i+100] := lut[i]; //fill 101..200
  for i := 1 to 55 do
      lut[i+200] := lut[i]; //fill 201..255
  if (lSaturationFrac < 0) or (lSaturationFrac >= 1.0) then
     exit;
  for i := 1 to 255 do
        desaturateRGBA(lut[i], lSaturationFrac);
end;

end.