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/* Copyright (c) 2008-2022 the MRtrix3 contributors.
*
* This Source Code Form is subject to the terms of the Mozilla Public
* License, v. 2.0. If a copy of the MPL was not distributed with this
* file, You can obtain one at http://mozilla.org/MPL/2.0/.
*
* Covered Software is provided under this License on an "as is"
* basis, without warranty of any kind, either expressed, implied, or
* statutory, including, without limitation, warranties that the
* Covered Software is free of defects, merchantable, fit for a
* particular purpose or non-infringing.
* See the Mozilla Public License v. 2.0 for more details.
*
* For more details, see http://www.mrtrix.org/.
*/
#ifndef __command_h__
#define __command_h__
#ifdef FLUSH_TO_ZERO
# include <xmmintrin.h>
#endif
#include "app.h"
#include "exec_version.h"
#ifdef MRTRIX_PROJECT
namespace MR {
namespace App {
void set_project_version ();
}
}
#endif
#define MRTRIX_UPDATED_API
#ifdef MRTRIX_AS_R_LIBRARY
extern "C" void R_main (int* cmdline_argc, char** cmdline_argv)
{
::MR::App::set_executable_uses_mrtrix_version();
#ifdef MRTRIX_PROJECT
::MR::App::set_project_version();
#endif
::MR::App::DESCRIPTION.clear();
::MR::App::ARGUMENTS.clear();
::MR::App::OPTIONS.clear();
try {
usage();
::MR::App::verify_usage();
::MR::App::init (*cmdline_argc, cmdline_argv);
::MR::App::parse ();
run ();
}
catch (MR::Exception& E) {
E.display();
return;
}
catch (int retval) {
return;
}
}
extern "C" void R_usage (char** output)
{
::MR::App::DESCRIPTION.clear();
::MR::App::ARGUMENTS.clear();
::MR::App::OPTIONS.clear();
usage();
std::string s = MR::App::full_usage();
*output = new char [s.size()+1];
strncpy(*output, s.c_str(), s.size()+1);
}
#else
int main (int cmdline_argc, char** cmdline_argv)
{
#ifdef FLUSH_TO_ZERO
// use gcc switches: -msse -mfpmath=sse -ffast-math
int mxcsr = _mm_getcsr ();
// Sets denormal results from floating-point calculations to zero:
mxcsr |= (1<<15) | (1<<11); // flush-to-zero
// Treats denormal values used as input to floating-point instructions as zero:
mxcsr |= (1<<6); // denormals-are-zero
_mm_setcsr (mxcsr);
#endif
::MR::App::set_executable_uses_mrtrix_version();
#ifdef MRTRIX_PROJECT
::MR::App::set_project_version();
#endif
try {
::MR::App::init (cmdline_argc, cmdline_argv);
usage ();
::MR::App::verify_usage();
::MR::App::parse_special_options();
#ifdef __gui_app_h__
::MR::GUI::App app (cmdline_argc, cmdline_argv);
#endif
::MR::App::parse ();
run ();
}
catch (::MR::Exception& E) {
E.display();
return 1;
}
catch (int retval) {
return retval;
}
return ::MR::App::exit_error_code;
}
#endif
#endif
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