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/* Copyright (c) 2008-2022 the MRtrix3 contributors.
*
* This Source Code Form is subject to the terms of the Mozilla Public
* License, v. 2.0. If a copy of the MPL was not distributed with this
* file, You can obtain one at http://mozilla.org/MPL/2.0/.
*
* Covered Software is provided under this License on an "as is"
* basis, without warranty of any kind, either expressed, implied, or
* statutory, including, without limitation, warranties that the
* Covered Software is free of defects, merchantable, fit for a
* particular purpose or non-infringing.
* See the Mozilla Public License v. 2.0 for more details.
*
* For more details, see http://www.mrtrix.org/.
*/
#ifndef __file_nifti_utils_h__
#define __file_nifti_utils_h__
#include "types.h"
#include "raw.h"
#include "header.h"
#include "file/config.h"
#include "file/nifti1.h"
#include "file/nifti2.h"
namespace MR
{
class Header;
namespace File
{
namespace NIfTI
{
extern bool right_left_warning_issued;
void axes_on_write (const Header& H, vector<size_t>& order, vector<bool>& flip);
transform_type adjust_transform (const Header& H, vector<size_t>& order);
bool check (int VERSION, Header& H, const size_t num_axes, const vector<std::string>& suffixes);
template <int VERSION> std::unique_ptr<ImageIO::Base> read (Header& H);
template <int VERSION> std::unique_ptr<ImageIO::Base> read_gz (Header& H);
template <int VERSION> std::unique_ptr<ImageIO::Base> create (Header& H);
template <int VERSION> std::unique_ptr<ImageIO::Base> create_gz (Header& H);
int version (Header& H);
std::string get_json_path (const std::string & nifti_path);
}
}
}
#endif
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