File: tiff.cpp

package info (click to toggle)
mrtrix3 3.0.4-1
  • links: PTS, VCS
  • area: main
  • in suites: forky, sid, trixie
  • size: 13,712 kB
  • sloc: cpp: 129,776; python: 9,494; sh: 593; makefile: 234; xml: 47
file content (78 lines) | stat: -rw-r--r-- 2,181 bytes parent folder | download
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
/* Copyright (c) 2008-2022 the MRtrix3 contributors.
 *
 * This Source Code Form is subject to the terms of the Mozilla Public
 * License, v. 2.0. If a copy of the MPL was not distributed with this
 * file, You can obtain one at http://mozilla.org/MPL/2.0/.
 *
 * Covered Software is provided under this License on an "as is"
 * basis, without warranty of any kind, either expressed, implied, or
 * statutory, including, without limitation, warranties that the
 * Covered Software is free of defects, merchantable, fit for a
 * particular purpose or non-infringing.
 * See the Mozilla Public License v. 2.0 for more details.
 *
 * For more details, see http://www.mrtrix.org/.
 */

#ifdef MRTRIX_TIFF_SUPPORT

#include "header.h"
#include "image_helpers.h"
#include "file/tiff.h"
#include "image_io/tiff.h"

namespace MR
{
  namespace ImageIO
  {

    void TIFF::load (const Header& header, size_t)
    {
      DEBUG ("allocating buffer for TIFF image \"" + header.name() + "\"...");
      addresses.resize (1);
      addresses[0].reset (new uint8_t [footprint (header)]);
      uint8_t* data = addresses[0].get();

      for (auto& entry : files) {
        File::TIFF tif (entry.name);

        uint16_t config (0);
        tif.read_and_check (TIFFTAG_PLANARCONFIG, config);

        size_t scanline_size = tif.scanline_size();

        do {

          if (header.ndim() == 3 || config == PLANARCONFIG_CONTIG) {
            for (ssize_t row = 0; row < header.size(1); ++row) {
              tif.read_scanline (data, row);
              data += scanline_size;
            }
          }
          else if (config == PLANARCONFIG_SEPARATE) {
            for (ssize_t s = 0; s < header.size(3); s++) {
              for (ssize_t row = 0; row < header.size(1); ++row) {
                tif.read_scanline (data, row, s);
                data += scanline_size;
              }
            }
          }

        } while (tif.read_directory() != 0);
      }

    }


    void TIFF::unload (const Header& header)
    {
      if (addresses.size()) {
        DEBUG ("deleting buffer for TIFF image \"" + header.name() + "\"...");
        addresses[0].release();
      }
    }

  }
}

#endif