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/* Copyright (c) 2008-2022 the MRtrix3 contributors.
*
* This Source Code Form is subject to the terms of the Mozilla Public
* License, v. 2.0. If a copy of the MPL was not distributed with this
* file, You can obtain one at http://mozilla.org/MPL/2.0/.
*
* Covered Software is provided under this License on an "as is"
* basis, without warranty of any kind, either expressed, implied, or
* statutory, including, without limitation, warranties that the
* Covered Software is free of defects, merchantable, fit for a
* particular purpose or non-infringing.
* See the Mozilla Public License v. 2.0 for more details.
*
* For more details, see http://www.mrtrix.org/.
*/
#include "stats.h"
namespace MR
{
namespace Stats
{
using namespace App;
const char * field_choices[] = { "mean", "median", "std", "std_rv", "min", "max", "count", nullptr };
const OptionGroup Options = OptionGroup ("Statistics options")
+ Option ("output",
"output only the field specified. Multiple such options can be supplied if required. "
"Choices are: " + join (field_choices, ", ") + ". Useful for use in scripts. "
"Both std options refer to the unbiased (sample) standard deviation. "
"For complex data, min, max and std are calculated separately for real and imaginary parts, "
"std_rv is based on the real valued variance (equals sqrt of sum of variances of imaginary and real parts).").allow_multiple()
+ Argument ("field").type_choice (field_choices)
+ Option ("mask",
"only perform computation within the specified binary mask image.")
+ Argument ("image").type_image_in ()
+ Option ("ignorezero",
"ignore zero values during statistics calculation");
}
}
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