1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231 232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247 248 249 250 251 252 253 254 255 256 257 258 259 260 261 262 263 264 265 266 267 268 269 270 271 272 273 274 275 276 277 278 279 280 281
|
#!/usr/bin/python3
# Copyright (c) 2008-2022 the MRtrix3 contributors.
#
# This Source Code Form is subject to the terms of the Mozilla Public
# License, v. 2.0. If a copy of the MPL was not distributed with this
# file, You can obtain one at http://mozilla.org/MPL/2.0/.
#
# Covered Software is provided under this License on an "as is"
# basis, without warranty of any kind, either expressed, implied, or
# statutory, including, without limitation, warranties that the
# Covered Software is free of defects, merchantable, fit for a
# particular purpose or non-infringing.
# See the Mozilla Public License v. 2.0 for more details.
#
# For more details, see http://www.mrtrix.org/.
#
# Generates bash completion file for MRtrix commands
# MRtrix needs to be built prior to running this
#
# Author: Rami Tabbara
#
from __future__ import print_function
import getopt, sys, os, re, subprocess, locale
def usage():
print ('''
Usage: %s -m [dir_path] -c [file_path]\n
-m, --mrtrix_commands_dir [dir path]: The directory where the mrtrix executable commands reside.
-c, --completion_path [file path]: The generated bash completion file path.
''' % (sys.argv[0]))
def main(argv):
try:
opts, args = getopt.getopt(argv, "m:c:", ["mrtrix_commands_dir=", "completion_path="])
if not opts or len(opts) != 2:
raise getopt.GetoptError('Incorrect number of arguments')
except getopt.GetoptError:
usage()
sys.exit(2)
commands_dir = ""
completion_path = ""
commands = []
for opt, arg in opts:
if opt in ("-m", "--mrtrix_commands_dir"):
commands_dir = arg
elif opt in ("-c", "--completion_path"):
completion_path = arg
if not commands_dir or not os.path.isdir (commands_dir) or not completion_path:
usage()
sys.exit (2)
# Filter out any non executable files or debug commands
commands = [comm for comm in os.listdir (commands_dir) if os.access ( os.path.join( commands_dir, comm ), os.X_OK) and not re.match (r'^\w+__debug', comm)]
if not commands:
sys.exit (0)
parse_commands (commands_dir, completion_path, commands)
###########################################################################
# PARSE FUNCTION
###########################################################################
def parse_commands (commands_dir, completion_path, commands):
completion_file = open (completion_path, 'w+')
###########################################################################
# INNER PARSE FUNCTIONS
###########################################################################
def flush_option_num_args ():
if not current_option:
print ('\t_%s_max_num_args() { echo %s; }\n' % (command, current_num_of_option_args), file = completion_file)
else:
print ('\t_%s_%s_max_num_args() { echo %s; }\n' % (command, current_option, current_num_of_option_args), file = completion_file)
def flush_option_arg ():
if not current_option:
print ('\t_%s_arg_%s()' % (command, current_num_of_option_args), file = completion_file)
else:
print ('\t_%s_%s_arg_%s()' % (command, current_option, current_num_of_option_args), file = completion_file)
print ('\t{ echo "%s"; }\n' % (current_arg_choices) , file = completion_file)
def flush_option_arg_allows_multiple ():
if not current_option:
print ('\t_%s_arg_%s_allows_multiple()' % (command, current_num_of_option_args), file = completion_file)
else:
print ('\t_%s_%s_arg_%s_allows_multiple()' % (command, current_option, current_num_of_option_args), file = completion_file)
print ('\t{ echo %s; }\n' % (current_arg_allows_multiple), file = completion_file)
def parse_option_arg_choices (arg_type, choices = []):
arg_choices = ""
if arg_type == 'CHOICE':
for choice in choices:
choice = choice.rstrip ()
# End of choice lists are generally delimited by -1
# however tckgen choices are delimited by 2 (?)
if choice in ['-1', '2']:
break;
else:
arg_choices += " " + choice
elif arg_type == 'IMAGEIN':
arg_choices ='`eval ls $1*.{mih,mif,nii,dcm,msf,hdr,mgh,nii.gz,mif.gz} 2> /dev/null | tr "\n" " "``eval ls -d $1*/ 2> /dev/null | tr "\n" " "`'
elif arg_type == 'FILEIN':
arg_choices ='`eval ls "$1*" 2> /dev/null | grep -E "$1*\.[^[:space:]]+"``eval ls -d $1*/ 2> /dev/null | tr "\n" " "`'
elif arg_type == 'TRACKSIN':
arg_choices ='`eval ls $1*.tck 2> /dev/null | tr "\n" " "``eval ls -d $1*/ 2> /dev/null | tr "\n" " "`'
#elif arg_type in ['FLOAT', 'INT']:
else:
arg_choices = "__empty__"
return arg_choices
###########################################################################
# IS_SCRIPT FUNCTION
###########################################################################
def is_script (command):
textchars = bytearray({7,8,9,10,12,13,27} | set(range(0x20, 0x100)) - {0x7f})
with open(os.path.join(commands_dir, command), "rb") as f:
bytes = f.read(1024)
return not bytes.translate(None, textchars)
###########################################################################
# END INTERNAL FUNCTIONS
###########################################################################
encoding = locale.getdefaultlocale()[1]
for command in sorted(commands):
if is_script(command):
continue
single_dash_options = ""
double_dash_options = ""
current_option = ""
current_num_of_option_args = 0
current_arg = ""
current_arg_optional = -1
current_arg_allows_multiple = -1
current_arg_type = ""
current_arg_choices = ""
try:
process = subprocess.Popen ([ os.path.join( commands_dir, command ), '__print_full_usage__'], stdout=subprocess.PIPE, stderr=subprocess.PIPE)
print ('''
_%s()
{
''' % (command), file = completion_file)
for line in process.stdout:
words = line.decode(encoding).split (' ')
if not words:
continue
if words[0] == 'OPTION':
flush_option_num_args ()
current_arg = ""
current_arg_type = ""
current_option = words[1]
single_dash_options += ' -' + current_option
double_dash_options += ' --' + current_option
current_num_of_option_args = 0
elif words[0] == 'ARGUMENT':
current_arg = words[1]
current_arg_optional = words[2]
current_arg_allows_multiple = words[3]
current_arg_type = words[4].rstrip ()
current_arg_choices = parse_option_arg_choices (current_arg_type, words[5:])
flush_option_arg_allows_multiple ()
flush_option_arg ()
current_num_of_option_args += 1
flush_option_num_args ()
print ('''
current_option=""
current_max_args=0
current_arg_index=0;
consumed_option_tokens=0;
current_num_consumed_option_args=0;
first_option_consumed=0;
COMPREPLY=();
cur="${COMP_WORDS[COMP_CWORD]}";
cur_filtered=`echo "${COMP_WORDS[COMP_CWORD]}" | sed 's/\..*$//g'`;
if [[ "$cur" == --* ]]; then
COMPREPLY=( $( compgen -W "%s" -- "$cur" ) );
elif [[ "$cur" == -* ]]; then
COMPREPLY=( $( compgen -W "%s" -- "$cur" ) );
else
current_option=""
word=""
array=""
for ((i=${#COMP_WORDS[@]}-2; i>=0; i--)); do
word="${COMP_WORDS[$i]}"
if [[ "$word" == -* ]]; then
option=$(echo $word | sed -E "s/-//g");
if [[ ${#option} == 0 ]]; then
continue;
fi
arg_index=$(( $COMP_CWORD - $i - 1));
max_args=$(_%s_${option}_max_num_args);
current_num_consumed_option_args=$((current_num_consumed_option_args > max_args ? max_args : current_num_consumed_option_args))
consumed_option_tokens=$(($current_consumed_option_tokens + $current_num_consumed_option_args + 1))
current_num_consumed_option_args=0;
if (( first_option_consumed == 0 )); then
current_option="$option";
current_arg_index=$arg_index;
current_max_args=$max_args;
first_option_consumed=1;
fi
else
current_num_consumed_option_args=$(($current_num_option_args + 1));
fi
done
if [[ "$current_option" != "" ]] && (( $current_arg_index >= 0 && $current_arg_index < $current_max_args )); then
array=`_%s_${current_option}_arg_${current_arg_index} $cur_filtered`
else
current_arg_index=$(($COMP_CWORD - $consumed_option_tokens - 1));
current_max_args=$(_%s_max_num_args);
# Check whether any of our arguments accepts multiple inputs
# If so, adjust the argument index to be the min. of these
for ((i=${current_max_args} - 1; i>=0; i--)); do
if (( $(_%s_arg_${i}_allows_multiple) == 1 )); then
current_arg_index=$((current_arg_index > i ? i : current_arg_index))
fi
done
if (( $current_arg_index >= 0 && $current_arg_index < $current_max_args )); then
array=`_%s_arg_${current_arg_index} $cur_filtered`;
fi
fi
if [[ "$array" == "__empty__" ]]; then
COMPREPLY=()
compopt +o default %s;
else
mapfile -t COMPREPLY < <( compgen -W "$array" -- "$cur" )
compopt -o default %s;
fi
fi
}
complete -F _%s %s \n''' % (double_dash_options, single_dash_options, command, command, command, command, command, command, command, command, command), file = completion_file)
except:
pass
completion_file.close ()
if __name__ == "__main__":
main(sys.argv[1:])
|