File: fixelcfestats

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mrtrix3 3.0.8-1
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fixelcfestats fixelfilter/smooth/out/ fixelcfestats/subjects.txt fixelcfestats/design.txt fixelcfestats/contrast.txt SIFT_phantom/matrix/ tmp/ -cfe_legacy -force && testing_diff_image tmp/abs_effect.mif fixelcfestats/legacy/abs_effect.mif -frac 1e-5 && testing_diff_image tmp/beta0.mif fixelcfestats/legacy/beta0.mif -frac 1e-5 && testing_diff_image tmp/beta1.mif fixelcfestats/legacy/beta1.mif -frac 1e-5 && testing_diff_image tmp/std_dev.mif fixelcfestats/legacy/std_dev.mif -frac 1e-5 && testing_diff_image tmp/std_effect.mif fixelcfestats/legacy/std_effect.mif -frac 1e-5 && testing_diff_image tmp/tvalue.mif fixelcfestats/legacy/tvalue.mif -frac 1e-5 && mrcalc tmp/fwe_1mpvalue.mif 0.95 -gt - | testing_diff_image - SIFT_phantom/fixels/upper.mif
fixelcfestats fixelfilter/smooth/out/ fixelcfestats/subjects.txt fixelcfestats/design.txt fixelcfestats/contrast.txt SIFT_phantom/matrix/ tmp/ -force && testing_diff_image tmp/abs_effect.mif fixelcfestats/default/abs_effect.mif -frac 1e-5 && testing_diff_image tmp/beta0.mif fixelcfestats/default/beta0.mif -frac 1e-5 && testing_diff_image tmp/beta1.mif fixelcfestats/default/beta1.mif -frac 1e-5 && testing_diff_image tmp/cfe.mif fixelcfestats/default/cfe.mif -frac 1e-5 && testing_diff_image tmp/std_dev.mif fixelcfestats/default/std_dev.mif -frac 1e-5 && testing_diff_image tmp/std_effect.mif fixelcfestats/default/std_effect.mif -frac 1e-5 && testing_diff_image tmp/tvalue.mif fixelcfestats/default/tvalue.mif -frac 1e-5 && testing_diff_image tmp/Zstat.mif fixelcfestats/default/Zstat.mif -frac 1e-5 && mrcalc tmp/fwe_1mpvalue.mif 0.95 -gt - | testing_diff_image - SIFT_phantom/fixels/upper.mif
fixelcfestats fixelfilter/smooth/out/ fixelcfestats/subjects.txt fixelcfestats/design.txt fixelcfestats/contrast.txt SIFT_phantom/matrix/ tmp/ -mask SIFT_phantom/fixels/upper.mif -force && testing_diff_image tmp/abs_effect.mif fixelcfestats/masked/abs_effect.mif -frac 1e-5 && testing_diff_image tmp/beta0.mif fixelcfestats/masked/beta0.mif -frac 1e-5 && testing_diff_image tmp/beta1.mif fixelcfestats/masked/beta1.mif -frac 1e-5 && testing_diff_image tmp/cfe.mif fixelcfestats/masked/cfe.mif -frac 1e-5 && testing_diff_image tmp/std_dev.mif fixelcfestats/masked/std_dev.mif -frac 1e-5 && testing_diff_image tmp/std_effect.mif fixelcfestats/masked/std_effect.mif -frac 1e-5 && testing_diff_image tmp/tvalue.mif fixelcfestats/masked/tvalue.mif -frac 1e-5 && testing_diff_image tmp/Zstat.mif fixelcfestats/masked/Zstat.mif -frac 1e-5 && mrcalc tmp/fwe_1mpvalue.mif 0.95 -gt - | testing_diff_image - SIFT_phantom/fixels/upper.mif