File: mrclusterstats

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mrtrix3 3.0.8-1
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rm -rf tmp/ && mkdir tmp/ && mrclusterstats mrclusterstats/subjects.txt mrclusterstats/design.txt mrclusterstats/contrast.txt SIFT_phantom/mask.mif tmp/ && testing_diff_image tmp/abs_effect.mif mrclusterstats/legacy/abs_effect.mif && testing_diff_image tmp/beta0.mif mrclusterstats/legacy/beta0.mif && testing_diff_image tmp/beta1.mif mrclusterstats/legacy/beta1.mif && testing_diff_image tmp/std_dev.mif mrclusterstats/legacy/std_dev.mif && testing_diff_image tmp/std_effect.mif mrclusterstats/legacy/std_effect.mif && testing_diff_image tmp/tvalue.mif mrclusterstats/legacy/tvalue.mif && mrcalc tmp/fwe_1mpvalue.mif 0.95 -gt - | testing_diff_image - SIFT_phantom/upper.mif
rm -rf tmp/ && mkdir tmp/ && mrclusterstats mrclusterstats/subjects.txt mrclusterstats/design.txt mrclusterstats/contrast.txt SIFT_phantom/mask.mif tmp/ && testing_diff_image tmp/abs_effect.mif mrclusterstats/default/abs_effect.mif && testing_diff_image tmp/beta0.mif mrclusterstats/default/beta0.mif && testing_diff_image tmp/beta1.mif mrclusterstats/default/beta1.mif && testing_diff_image tmp/std_dev.mif mrclusterstats/default/std_dev.mif && testing_diff_image tmp/std_effect.mif mrclusterstats/default/std_effect.mif && testing_diff_image tmp/tfce.mif mrclusterstats/default/tfce.mif && testing_diff_image tmp/tvalue.mif mrclusterstats/default/tvalue.mif && testing_diff_image tmp/Zstat.mif mrclusterstats/default/Zstat.mif && mrcalc tmp/fwe_1mpvalue.mif 0.95 -gt - | testing_diff_image - SIFT_phantom/upper.mif
rm -rf tmp/ && mkdir tmp/ && mrclusterstats mrclusterstats/subjects.txt mrclusterstats/design.txt mrclusterstats/contrast.txt SIFT_phantom/upper.mif tmp/ && testing_diff_image tmp/abs_effect.mif mrclusterstats/masked/abs_effect.mif && testing_diff_image tmp/beta0.mif mrclusterstats/masked/beta0.mif && testing_diff_image tmp/beta1.mif mrclusterstats/masked/beta1.mif && testing_diff_image tmp/std_dev.mif mrclusterstats/masked/std_dev.mif && testing_diff_image tmp/std_effect.mif mrclusterstats/masked/std_effect.mif && testing_diff_image tmp/tvalue.mif mrclusterstats/masked/tvalue.mif && mrcalc tmp/fwe_1mpvalue.mif 0.95 -gt - | testing_diff_image - SIFT_phantom/upper.mif
rm -rf tmp/ && mkdir tmp/ && mrclusterstats mrclusterstats/subjects.txt mrclusterstats/design.txt mrclusterstats/contrast.txt SIFT_phantom/mask.mif tmp/ -threshold 3.5 && testing_diff_image tmp/clustersize.mif mrclusterstats/threshold/cluster_sizes.mif && mrcalc tmp/fwe_1mpvalue.mif 0.95 -gt - | testing_diff_image - SIFT_phantom/upper.mif