File: mrregister

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mrtrix3 3.0.8-1
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mrregister moving.mif.gz template.mif.gz -type affine -affine_niter 15 -transformed - | testing_diff_image - mrregister/out.mif.gz -abs 1e-5
mrregister moving.mif.gz template.mif.gz moving.mif.gz template.mif.gz -type affine -affine_niter 15 -transformed - | testing_diff_image - mrregister/out.mif.gz -abs 1e-5
mrregister moving.mif.gz template.mif.gz moving.mif.gz template.mif.gz -type affine -affine_niter 15 -mc_weights 1,2 -transformed - | testing_diff_image - mrregister/out.mif.gz -abs 1e-5
mrregister $(mrtransform dwi2fod/msmt/wm.mif -linear moving2template.txt -reorient_fod yes - ) dwi2fod/msmt/wm.mif $(mrtransform dwi2fod/msmt/gm.mif -linear moving2template.txt - ) dwi2fod/msmt/gm.mif -type rigid_affine -affine tmpaffine.txt -nthreads 0 -force && transformcompose moving2template.txt tmpaffine.txt tmpidentity.txt -force && testing_diff_matrix mrregister/identity.txt tmpidentity.txt -abs 0.06
mrregister dwi2fod/msmt/wm.mif $(mrtransform dwi2fod/msmt/wm.mif -linear moving2template.txt -reorient_fod yes - ) -type rigid_nonlinear -rigid_scale 1 -rigid_niter 0 -nl_niter 2,2 -nl_scale 0.3,1 -nl_lmax 0,2 -nl_warp_full - -force | testing_diff_image - mrregister/warp_full.mif.gz -abs 1e-4
mrregister dwi2fod/msmt/wm.mif $(mrtransform dwi2fod/msmt/wm.mif -linear moving2template.txt -reorient_fod yes - ) dwi2fod/msmt/wm.mif $(mrtransform dwi2fod/msmt/wm.mif -linear moving2template.txt -reorient_fod yes - ) -type rigid_nonlinear -rigid_scale 1 -rigid_niter 0 -nl_niter 2,2 -nl_scale 0.3,1 -nl_lmax 0,2 -nl_warp_full - -force | testing_diff_image - mrregister/warp_full.mif.gz -abs 1e-4