File: mrtransform

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mrtrix3 3.0.8-1
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mrtransform moving.mif.gz -template template.mif.gz -linear moving2template.txt - | testing_diff_image - mrtransform/out.mif.gz -image $(mrcalc mrtransform/out.mif.gz -abs 1e-5 -mult - | mrfilter - smooth -)
mrtransform moving.mif.gz -linear moving2template.txt - | testing_diff_image - mrtransform/out2.mif.gz -frac 1e-5
mrtransform moving.mif.gz -replace moving2template.txt - | testing_diff_image - mrtransform/out3.mif.gz -frac 1e-5
mrtransform template.mif.gz -template moving.mif.gz -interp linear -inverse -linear moving2template.txt - | testing_diff_image - mrtransform/out4.mif.gz -image $(mrcalc mrtransform/out4.mif.gz -abs 1e-5 -mult - | mrfilter - smooth -)
mrtransform dwi_mean.mif -flip 0 - | testing_diff_image - mrtransform/out5.mif -frac 1e-5
mrtransform dwi.mif -identity - | testing_diff_image - mrtransform/out6.mif -frac 1e-5
mrinfo dwi_mean.mif -transform > tmp.txt && mrtransform -replace tmp.txt dwi_mean.mif - | mrtransform dwi_mean.mif -template - - | testing_diff_image - dwi_mean.mif -image $(mrcalc dwi_mean.mif -abs 1e-5 -mult - | mrfilter - smooth -)
mrtransform fod.mif -linear rotatez.txt -reorient_fod yes - | testing_diff_image - mrtransform/out7.mif.gz -voxel 0.001
mrtransform fod.mif -linear rotatez.txt -reorient_fod yes -template fod.mif - | testing_diff_image - mrtransform/out8.mif.gz -voxel 0.001
mrtransform fod.mif -warp rotatez_warp.mif -reorient_fod yes - | testing_diff_image - mrtransform/out9.mif.gz -voxel 0.001