File: labelsgmfix

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mrtrix3 3.0.8-1
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file content (4 lines) | stat: -rw-r--r-- 1,144 bytes parent folder | download | duplicates (3) 
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mkdir -p ../tmp/labelsgmfix && labelsgmfix BIDS/sub-01/anat/aparc+aseg.mgz BIDS/sub-01/anat/sub-01_T1w.nii.gz labelsgmfix/FreeSurferColorLUT.txt ../tmp/labelsgmfix/freesurfer.mif -force && testing_diff_header ../tmp/labelsgmfix/freesurfer.mif labelsgmfix/freesurfer.mif.gz
labelsgmfix BIDS/sub-01/anat/sub-01_parc-desikan_indices.nii.gz BIDS/sub-01/anat/sub-01_T1w.nii.gz BIDS/parc-desikan_lookup.txt ../tmp/labelsgmfix/default.mif -force && testing_diff_header ../tmp/labelsgmfix/default.mif labelsgmfix/default.mif.gz
mrcalc BIDS/sub-01/anat/sub-01_T1w.nii.gz BIDS/sub-01/anat/sub-01_brainmask.nii.gz -mult tmp.mif -force && labelsgmfix BIDS/sub-01/anat/sub-01_parc-desikan_indices.nii.gz tmp.mif BIDS/parc-desikan_lookup.txt ../tmp/labelsgmfix/premasked.mif -premasked -force && testing_diff_header ../tmp/labelsgmfix/premasked.mif labelsgmfix/premasked.mif.gz
labelsgmfix BIDS/sub-01/anat/sub-01_parc-desikan_indices.nii.gz BIDS/sub-01/anat/sub-01_T1w.nii.gz BIDS/parc-desikan_lookup.txt ../tmp/labelsgmfix/sgm_amyg_hipp.mif -sgm_amyg_hipp -force && testing_diff_header ../tmp/labelsgmfix/sgm_amyg_hipp.mif labelsgmfix/sgm_amyg_hipp.mif.gz