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FROM python:3.11-slim
LABEL author="Phil Ewels" \
description="MultiQC" \
maintainer="phil.ewels@seqera.io"
# Add the MultiQC source files to the container
ADD . /usr/src/multiqc
WORKDIR /usr/src/multiqc
# - Install `ps` for Nextflow
# - Install MultiQC through pip
# - Delete unnecessary Python files
# - Remove MultiQC source directory
# - Add custom group and user
RUN apt-get update && apt-get install -y procps && rm -rf /var/lib/apt/lists/* && \
pip install --upgrade pip && \
pip install -v --no-cache-dir . && \
apt-get clean -y && \
for cache_dir in $(find /usr/local/lib/python3.11 \( -iname '*.c' -o -iname '*.pxd' -o -iname '*.pyd' -o -iname '__pycache__' \)); do \
rm -rf "$cache_dir"; \
done; \
rm -rf "/usr/src/multiqc/" && \
groupadd --gid 1000 multiqc && \
useradd -ms /bin/bash --create-home --gid multiqc --uid 1000 multiqc
# Set to be the new user
USER multiqc
# Set default workdir to user home
WORKDIR /home/multiqc
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