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FROM python:3.11-slim
LABEL author="Phil Ewels" \
description="MultiQC" \
maintainer="phil.ewels@seqera.io"
# Add the MultiQC source files to the container
ADD . /usr/src/multiqc
WORKDIR /usr/src/multiqc
# - Install `ps` for Nextflow
# - Install MultiQC through pip
# - Delete unnecessary Python files
# - Remove MultiQC source directory
# - Add custom group and user
RUN \
echo "Docker build log: Run apt-get update" 1>&2 && \
apt-get update -y -qq \
&& \
echo "Docker build log: Install procps" 1>&2 && \
apt-get install -y -qq procps && \
echo "Docker build log: Clean apt cache" 1>&2 && \
rm -rf /var/lib/apt/lists/* && \
apt-get clean -y && \
echo "Docker build log: Upgrade pip and install multiqc" 1>&2 && \
pip install --quiet --upgrade pip && \
pip install --verbose --no-cache-dir . && \
echo "Docker build log: Delete python cache directories" 1>&2 && \
find /usr/local/lib/python3.11 \( -iname '*.c' -o -iname '*.pxd' -o -iname '*.pyd' -o -iname '__pycache__' \) -printf "\"%p\" " | \
xargs rm -rf {} && \
echo "Docker build log: Delete /usr/src/multiqc" 1>&2 && \
rm -rf "/usr/src/multiqc/" && \
echo "Docker build log: Add multiqc user and group" 1>&2 && \
groupadd --gid 1000 multiqc && \
useradd -ms /bin/bash --create-home --gid multiqc --uid 1000 multiqc
# Set to be the new user
USER multiqc
# Set default workdir to user home
WORKDIR /home/multiqc
# Check everything is working smoothly
RUN echo "Docker build log: Testing multiqc" 1>&2 && \
multiqc --help \
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