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Source: multiqc
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders:
Andreas Tille <tille@debian.org>,
Steffen Moeller <moeller@debian.org>,
Section: science
Priority: optional
Build-Depends:
debhelper-compat (= 13),
dh-sequence-python3,
python3-all,
python3-click,
python3-coloredlogs <!nocheck>,
python3-humanfriendly <!nocheck>,
python3-humanize <!nocheck>,
python3-importlib-metadata <!nocheck>,
python3-jinja2,
python3-lzstring,
python3-markdown,
python3-matplotlib,
python3-numpy,
python3-plotly <!nocheck>,
python3-pyaml-env <!nocheck>,
python3-requests,
python3-rich <!nocheck>,
python3-rich-click <!nocheck>,
python3-setuptools,
python3-spectra,
python3-yaml,
Standards-Version: 4.7.2
Vcs-Browser: https://salsa.debian.org/med-team/multiqc
Vcs-Git: https://salsa.debian.org/med-team/multiqc.git
Homepage: https://multiqc.info/
Package: multiqc
Architecture: all
Depends:
fonts-glyphicons-halflings,
libjs-bootstrap,
libjs-jquery,
libjs-jquery-tablesorter,
libjs-jquery-ui,
python3-click,
python3-coloredlogs,
python3-humanfriendly,
python3-jinja2,
python3-lzstring,
python3-markdown,
python3-matplotlib,
python3-numpy,
python3-requests,
python3-rich,
python3-spectra,
python3-yaml,
${misc:Depends},
${python3:Depends},
Recommends:
libjs-filesaver,
node-clipboard,
pandoc,
texlive-xetex,
Enhances:
adapterremoval,
afterqc,
bamtools,
bbmap,
bcftools,
bcl2fastq,
biobambam2,
biobloomtools,
biscuit,
bismark,
bowtie,
bowtie2,
busco,
clipandmerge,
clusterflow,
conpair,
cutadapt,
damageprofiler,
dedup,
deeptools,
disambiguate,
dragen,
fastp,
fastq-screen,
fastqc,
featurecounts,
fgbio,
flash,
flexbar,
gatk,
goleft-indexcov,
happy,
hicexplorer,
hicpro,
hicup,
hisat2,
homer,
htseq,
interop,
ivar,
jellyfish,
kaiju,
kallisto,
kat,
kraken,
leehom,
longranger,
macs2,
malt,
methylqa,
minionqc,
mirtop,
mirtrace,
mosdepth,
mtnucratio,
multivcfanalyzer,
peddy,
phantompeakqualtools,
picard-tools,
preseq,
prokka,
pycoqc,
qorts,
qualimap,
quast,
rna-seqc,
rna-star,
rockhopper,
rsem,
rseqc,
salmon,
samblaster,
samtools,
sargasso,
seqyclean,
sexdeterrmine,
sickle,
skewer,
slamdunk,
snpeff,
snpsplit,
somalier,
sortmerna,
stacks,
supernova,
theta2,
trimmomatic,
varscan2,
vcftools,
verifybamid,
Description: output integration for RNA sequencing across tools and samples
The sequencing of DNA or RNA with current high-throughput technologies
involves an array of tools and these are applied over a range of samples.
It is easy to loose oversight. And gathering the data and forwarding
them in a readable manner to the individuals who took the samples is
a challenge for a tool in itself. Well. Here it is.
MultiQC aggregates the output of multiple tools into a single report.
.
Reports are generated by scanning given directories for recognised log
files. These are parsed and a single HTML report is generated summarising
the statistics for all logs found. MultiQC reports can describe multiple
analysis steps and large numbers of samples within a single plot, and
multiple analysis tools making it ideal for routine fast quality control.
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