File: freyja.md

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---
name: Freyja
url: https://github.com/andersen-lab/Freyja
description: >
  Freyja: Recover relative lineage abundances from mixed SARS-CoV-2 samples.
---

Freyja is a tool to recover relative lineage abundances from mixed SARS-CoV-2 samples from a sequencing dataset and uses lineage-determining mutational "barcodes" derived from the UShER global phylogenetic tree to solve the constrained (unit sum, non-negative) de-mixing problem.