File: hops.md

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---
name: HOPS
url: https://www.github.com/rhubler/HOPS
description: >
  This tool performs screening of output from the ancient DNA optimised
  BLAST-replacement tool MALT, to identify taxa that have expected ancient
  DNA characteristics.
---

This module takes the JSON output of the HOPS postprocessing R script (Version
\>= 0.34). to recreate the possible positives heatmap, with the heat intensity
representing the number of 'ancient DNA characteristics' categories (small
edit distance, damage, both edit distance and aDNA damage) that a particular
taxon has.