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---
name: HTSeq
url: http://www-huber.embl.de/HTSeq/doc/overview.html
description: >
HTSeq is a Python package that provides infrastructure to
process data from high-throughput sequencing assays.
HTSeq-count takes a file with aligned sequencing reads, plus
a list of genomic features and counts how many reads map to each feature.
---
HTSeq is a general purpose Python package that provides infrastructure to
process data from high-throughput sequencing assays. `htseq-count` is a tool
that is part of the main HTSeq package - it takes a file with aligned sequencing
reads, plus a list of genomic features and counts how many reads map to each feature.
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