File: interop.md

package info (click to toggle)
multiqc 1.21%2Bdfsg-3
  • links: PTS, VCS
  • area: main
  • in suites: forky, sid
  • size: 30,164 kB
  • sloc: python: 52,323; javascript: 7,064; sh: 76; makefile: 21
file content (10 lines) | stat: -rw-r--r-- 998 bytes parent folder | download | duplicates (2) 
1
2
3
4
5
6
7
8
9
10
 
---
name: InterOp
url: http://illumina.github.io/interop/index.html
description: >
  The Illumina InterOp libraries are a set of common routines used for reading and writing InterOp metric files. These metric files are binary files produced during a run providing detailed statistics about a run. In a few cases, the metric files are produced after a run during secondary analysis (index metrics) or for faster display of a subset of the original data (collapsed quality scores).
---

This module parses the output from the InterOp Summary executable and creates a table view. The aim is to replicate the `Run & Lane Metrics` table from the [Illumina Basespace](https://basespace.illumina.com) interface. The executable used can easily be installed from the BioConda channel using `conda install -c bioconda illumina-interop`.

The MultiQC interop module can parse the outputs of the `interop_summary` and `interop_index-summary` executables. Note that these must be run with the `--csv=1` option.