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---
name: SnpEff
url: http://snpeff.sourceforge.net/
description: >
SnpEff is a genetic variant annotation and effect prediction toolbox.
It annotates and predicts the effects of variants on genes (such as amino
acid changes).
---
The SnpEff module parses results generated by
[SnpEff](http://snpeff.sourceforge.net/),
a genetic variant annotation and effect prediction toolbox.
It annotates and predicts the effects of variants on genes (such as amino
acid changes).
MultiQC parses the summary `.csv` file that is generated by SnpEff. Note that
you must run SnpEff with `-csvStats <filename>` for this to be generated.
See the [SnpEff](http://snpeff.sourceforge.net/SnpEff_manual.html#outputSummary)
documentation for more information.
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