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---
name: Somalier
url: https://github.com/brentp/somalier
description: >
Somalier does fast genotype :: pedigree correspondence checks
from BAM/CRAM/VCF
---
Somalier can be used to find sample swaps or duplicates in cancer
projects, where there is often no jointly-called VCF across samples.
It is also extremely efficient and so can be used to find all-vs-all
relatedness estimates for thousands of samples.
It also outputs information on sex, depth, heterozgyosity, and ancestry
to be use for general QC.
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