File: stacks.md

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---
name: Stacks
url: http://catchenlab.life.illinois.edu/stacks/
description: >
  Stacks is a software for analyzing restriction enzyme-based data (e.g. RAD-seq)
---

#### Very important note

This module will only work with Stacks version 2.1 or greater.
Furthermore, this module is designed to only parse some of the output from the `denovo_map` pipeline.
If you are missing some functionality, please submit an issue on the [MultiQC github page](https://github.com/MultiQC/MultiQC)