File: whatshap.md

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---
name: WhatsHap
url: https://whatshap.readthedocs.io
description: >
  WhatsHap is a software for phasing genomic variants using DNA sequencing reads,
  also called read-based phasing or haplotype assembly. It is especially
  suitable for long reads, but works also well with short reads.
---

The WhatsHap module parses results generated by
[WhatsHap](https://whatshap.readthedocs.io), and is currently restricted to the
output from `whatshap stats --tsv`.