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Document: mummer-doc
Title: MUMmer user manual
Author: Arthur L. Delcher, Stefan Kurtz and others
Abstract: MUMmer is a system for rapidly aligning entire genomes, whether in
complete or draft form. For example, MUMmer 3.0 can find all 20-basepair or
longer exact matches between a pair of 5-megabase genomes in 13.7 seconds,
using 78 MB of memory, on a 2.4 GHz Linux desktop computer. MUMmer can also
align incomplete genomes; it handles the 100s or 1000s of contigs from a
shotgun sequencing project with ease, and will align them to another set of
contigs or a genome using the NUCmer program included with the system. If the
species are too divergent for DNA sequence alignment to detect similarity, then the
PROmer program can generate alignments based upon the six-frame translations of both
input sequences.
Section: Science/Biology
Format: pdf
Files: /usr/share/doc/mummer-doc/*.pdf /usr/share/doc/mummer-doc/*.pdf
Format: HTML
Index: /usr/share/doc/mummer-doc/html/index.html
Files: /usr/share/doc/mummer-doc/html/*.html
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