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/home/aphillip/web/mummer/examples/data/D_melanogaster_2Rslice.fasta /home/aphillip/web/mummer/examples/data/D_pseudoobscura_contigs.fasta
============================================================
-- Alignments between D_melanogaster_2Rslice and 3214968
-- BEGIN alignment [ -3 26049 - 25810 | +3 84 - 323 ]
26049 KEKSTEAVLEGLQTQIQALEKYMINTEERKRRFVTNFVGFTIGAYIVGF
KEKSTE VLE LQ QI+ LEKYMINT+ERKR FVTNF+G TIGAYIVGF
84 KEKSTEEVLEALQVQIKDLEKYMINTQERKRSFVTNFLGITIGAYIVGF
25902 GLWWYFYFPPTMQECFMYLVPLLLFPIV*VL
GLW FYFPPT +E +YLVPLLLFP++ V
231 GLWCCFYFPPTWKERIVYLVPLLLFPVIIVF
-- END alignment [ -3 26049 - 25810 | +3 84 - 323 ]
-- BEGIN alignment [ -2 25750 - 25604 | +3 315 - 461 ]
25750 IIFLRRLFTWYFQRKLNKNGDKLTRLKEDKRKILEQVMDKETYKVGSQL
I+F+R++FTWYFQRKLNKNGDKL +LKE K+KILEQVMDKETYKV L
315 IVFMRQMFTWYFQRKLNKNGDKLAQLKEKKKKILEQVMDKETYKVAVNL
-- END alignment [ -2 25750 - 25604 | +3 315 - 461 ]
-- BEGIN alignment [ -1 25358 - 24888 | +3 444 - 845 ]
25358 QVAVNLLERFGDKKQLRISGLPTGSTPNRPQVERSPLTVAAVARTSSAG
+VAVNLLERFGD+K ++ + S +PQ R+P A +
444 KVAVNLLERFGDRK...LNQSFSRSPAMQPQ..RTPQPAARLP......
25211 GQQQQQRSLAPYTSVYRNNNNNQNTSLNSSVISTHSLGQMTSASPQLRA
G QQR L PY SVYRN NNN +LNSS S MTSASP + A
558 GASTQQRLLTPYRSVYRNVNNN...NLNSSTQS......MTSASPNVGA
25064 VQELRRRSPFPIVD.DRSRSAIDRIVDFIVGDSPKDRFGMICKACHAHN
VQELRRR+PFP+VD +RSRSA+DRIVDFIVGD+P R+GMICK C HN
678 VQELRRRTPFPVVDQNRSRSAVDRIVDFIVGDTP.IRYGMICKECDGHN
24920 GGL*LLKENFY
G +L E+ Y
822 G...MLPEDEY
-- END alignment [ -1 25358 - 24888 | +3 444 - 845 ]
-- BEGIN alignment [ -1 24617 - 24462 | +3 843 - 1001 ]
24617 YEYTTFRCAFCNVLNPARKKRPVAPRLSLEAPSDTANKRNDSSESESSD
Y +T+FRCAFCN LNPARKKRPVAPRLSL + +N R DSS S+SSD
843 YVFTSFRCAFCNALNPARKKRPVAPRLSLNQQTPPSNNRIDSSGSDSSD
24470 D.DS
D DS
990 DYDS
-- END alignment [ -1 24617 - 24462 | +3 843 - 1001 ]
-- BEGIN alignment [ +3 25617 - 25787 | -2 448 - 278 ]
25617 TL*VSLSMTCSNILRLSSFRRVSLSPFLLSLRWKYHVNSRRRKMMLEPG
TL*VSLSMTCSNI SF SLSPFLLSLR KYHVN R K M+
448 TL*VSLSMTCSNIFFFFSFSWASLSPFLLSLR*KYHVNICRMKTMITGN
25764 REKGGSGT
R G T
301 RSSGTKYT
-- END alignment [ +3 25617 - 25787 | -2 448 - 278 ]
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