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/home/aphillip/web/mummer/examples/data/D_melanogaster_2Rslice.fasta /home/aphillip/web/mummer/examples/data/D_pseudoobscura_contigs.fasta
PROMER

    [S1]     [E1]  |     [S2]     [E2]  |  [LEN 1]  [LEN 2]  |  [% IDY]  [% SIM]  [% STP]  |  [LEN R]  [LEN Q]  |  [COV R]  [COV Q]  | [FRM]  [TAGS]
========================================================================================================================================================
      24      362  |    39044    38688  |      339      357  |    79.83    82.35     2.94  |    35600    40744  |     0.95     0.88  |  3 -3  D_melanogaster_2Rslice	3210101
     352       23  |    38698    39045  |      330      348  |    89.66    91.38     0.86  |    35600    40744  |     0.93     0.85  | -2  1  D_melanogaster_2Rslice	3210101
     419      652  |    38635    38408  |      234      228  |    76.92    84.62    10.26  |    35600    40744  |     0.66     0.56  |  2 -1  D_melanogaster_2Rslice	3210101
     648      397  |    38394    38654  |      252      261  |    81.82    84.09     2.27  |    35600    40744  |     0.71     0.64  | -3  3  D_melanogaster_2Rslice	3210101
     870     1373  |    38124    37621  |      504      504  |    57.14    64.29     3.57  |    35600    40744  |     1.42     1.24  |  3 -2  D_melanogaster_2Rslice	3210101
    1366      419  |    37628    38635  |      948     1008  |    52.02    60.98     2.60  |    35600    40744  |     2.66     2.47  | -2  2  D_melanogaster_2Rslice	3210101
    1374      841  |    37620    38165  |      534      546  |    59.56    69.40     3.01  |    35600    40744  |     1.50     1.34  | -3  3  D_melanogaster_2Rslice	3210101
    1414     2172  |    37581    36853  |      759      729  |    60.87    71.54     2.57  |    35600    40744  |     2.13     1.79  |  1 -2  D_melanogaster_2Rslice	3210101
    1415     2167  |    37580    36858  |      753      723  |    65.34    71.31     3.39  |    35600    40744  |     2.12     1.77  |  2 -3  D_melanogaster_2Rslice	3210101
    1761     1414  |    37234    37581  |      348      348  |    91.38    97.41     0.00  |    35600    40744  |     0.98     0.85  | -3  1  D_melanogaster_2Rslice	3210101
    2171     1803  |    36854    37219  |      369      366  |    86.99    91.06     0.00  |    35600    40744  |     1.04     0.90  | -1  2  D_melanogaster_2Rslice	3210101
    2520     3809  |    36796    35438  |     1290     1359  |    65.31    70.45     6.32  |    35600    40744  |     3.62     3.34  |  3 -1  D_melanogaster_2Rslice	3210101
    3808     2528  |    35439    36788  |     1281     1350  |    74.29    81.92     0.00  |    35600    40744  |     3.60     3.31  | -2  3  D_melanogaster_2Rslice	3210101
    4584     4375  |    34937    35161  |      210      225  |    60.00    64.00     2.00  |    35600    40744  |     0.59     0.55  | -3  2  D_melanogaster_2Rslice	3210101
    7343     8674  |    32329    31049  |     1332     1281  |    66.45    71.71     4.82  |    35600    40744  |     3.74     3.14  |  2 -1  D_melanogaster_2Rslice	3210101
    8676     7366  |    31047    32306  |     1311     1260  |    73.84    79.16     0.22  |    35600    40744  |     3.68     3.09  | -3  3  D_melanogaster_2Rslice	3210101
    8749     8874  |    30887    30747  |      126      141  |    61.70    68.09     4.26  |    35600    40744  |     0.35     0.35  |  1 -3  D_melanogaster_2Rslice	3210101
    8777     8899  |    30859    30707  |      123      153  |    54.90    62.75     0.98  |    35600    40744  |     0.35     0.38  |  2 -1  D_melanogaster_2Rslice	3210101
    8942     8760  |    30688    30876  |      183      189  |    51.52    65.15     2.27  |    35600    40744  |     0.51     0.46  | -1  1  D_melanogaster_2Rslice	3210101
   12482    12649  |    27345    27187  |      168      159  |    60.32    60.32     3.17  |    35600    40744  |     0.47     0.39  |  2 -2  D_melanogaster_2Rslice	3210101
   12492    12653  |    27365    27189  |      162      177  |    62.71    66.10     0.85  |    35600    40744  |     0.46     0.43  |  3 -3  D_melanogaster_2Rslice	3210101
   12511    12666  |    27322    27170  |      156      153  |    70.37    75.93     4.63  |    35600    40744  |     0.44     0.38  |  1 -1  D_melanogaster_2Rslice	3210101
   17902    18252  |    23353    23009  |      351      345  |    75.00    82.50     0.83  |    35600    40744  |     0.99     0.85  |  1 -1  D_melanogaster_2Rslice	3210101
   20502    20990  |    22377    21874  |      489      504  |    71.18    73.53     2.94  |    35600    40744  |     1.37     1.24  |  3 -2  D_melanogaster_2Rslice	3210101
   20992    20501  |    21872    22378  |      492      507  |    79.53    84.80     0.58  |    35600    40744  |     1.38     1.24  | -2  2  D_melanogaster_2Rslice	3210101
   21517    21633  |    21502    21386  |      117      117  |    87.18    87.18     5.13  |    35600    40744  |     0.33     0.29  |  1 -1  D_melanogaster_2Rslice	3210101
   21527    21664  |    21492    21346  |      138      147  |    73.47    79.59     4.08  |    35600    40744  |     0.39     0.36  |  2 -2  D_melanogaster_2Rslice	3210101
   21534    21701  |    21485    21297  |      168      189  |    57.14    65.08     4.76  |    35600    40744  |     0.47     0.46  |  3 -3  D_melanogaster_2Rslice	3210101
   21687    21517  |    21272    21502  |      171      231  |    54.55    63.64     4.55  |    35600    40744  |     0.48     0.57  | -3  2  D_melanogaster_2Rslice	3210101
   22787    22987  |    20372    20154  |      201      219  |    54.67    60.00     4.00  |    35600    40744  |     0.56     0.54  |  2 -3  D_melanogaster_2Rslice	3210101
   22855    22986  |    20286    20155  |      132      132  |    70.45    77.27     4.55  |    35600    40744  |     0.37     0.32  |  1 -2  D_melanogaster_2Rslice	3210101
   22967    22857  |    20165    20284  |      111      120  |    77.50    80.00     2.50  |    35600    40744  |     0.31     0.29  | -1  2  D_melanogaster_2Rslice	3210101
   22978    22853  |    20163    20288  |      126      126  |    76.19    80.95     0.00  |    35600    40744  |     0.35     0.31  | -2  3  D_melanogaster_2Rslice	3210101
   23001    22858  |    20122    20283  |      144      162  |    70.37    75.93     3.70  |    35600    40744  |     0.40     0.40  | -3  1  D_melanogaster_2Rslice	3210101
   24617    24462  |      843     1001  |      156      159  |    69.81    79.25     0.00  |    35600     1370  |     0.44    11.61  | -1  3  D_melanogaster_2Rslice	3214968
   24668    24450  |    18925    19146  |      219      222  |    63.51    72.97     0.00  |    35600    40744  |     0.62     0.54  | -1  1  D_melanogaster_2Rslice	3210101
   25358    24888  |    18512    18928  |      471      417  |    54.38    65.00     0.62  |    35600    40744  |     1.32     1.02  | -1  2  D_melanogaster_2Rslice	3210101
   25358    24888  |      444      845  |      471      402  |    54.43    65.82     0.32  |    35600     1370  |     1.32    29.34  | -1  3  D_melanogaster_2Rslice	3214968
   25617    25787  |      448      278  |      171      171  |    63.16    64.91     2.63  |    35600     1370  |     0.48    12.48  |  3 -2  D_melanogaster_2Rslice	3214968
   25750    25604  |      315      461  |      147      147  |    77.55    89.80     0.00  |    35600     1370  |     0.41    10.73  | -2  3  D_melanogaster_2Rslice	3214968
   26049    25810  |       84      323  |      240      240  |    75.00    83.75     0.62  |    35600     1370  |     0.67    17.52  | -3  3  D_melanogaster_2Rslice	3214968
   26059    25616  |    18003    18452  |      444      450  |    53.33    65.33     1.00  |    35600    40744  |     1.25     1.10  | -2  3  D_melanogaster_2Rslice	3210101
   26061    25618  |    18001    18450  |      444      450  |    66.23    73.38     4.22  |    35600    40744  |     1.25     1.10  | -3  1  D_melanogaster_2Rslice	3210101