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/home/aphillip/web/mummer/examples/data/B_anthracis_Mslice.fasta /home/aphillip/web/mummer/examples/data/B_anthracis_contigs.fasta
NUCMER

    [S1]     [E1]  |     [S2]     [E2]  |  [LEN 1]  [LEN 2]  |  [% IDY]  |  [LEN R]  [LEN Q]  |  [COV R]  [COV Q]  | [TAGS]
===============================================================================================================================
    5224    12174  |     6944        1  |     6951     6944  |    99.80  |   312600     6944  |     2.22   100.00  | B_anthracis_Mslice	138389
   12256    19905  |     7647        1  |     7650     7647  |    99.88  |   312600     7647  |     2.45   100.00  | B_anthracis_Mslice	138310
   19959    52829  |    32872        1  |    32871    32872  |    99.98  |   312600    32872  |    10.52   100.00  | B_anthracis_Mslice	138291
   23368    24230  |      858        1  |      863      858  |    98.96  |   312600      879  |     0.28    97.61  | B_anthracis_Mslice	137829
   29078    29933  |        1      851  |      856      851  |    98.95  |   312600      851  |     0.27   100.00  | B_anthracis_Mslice	137827
   40129    40827  |        1      701  |      699      701  |    98.86  |   312600      701  |     0.22   100.00  | B_anthracis_Mslice	137892
   52816    75314  |    22500        1  |    22499    22500  |    99.99  |   312600    22500  |     7.20   100.00  | B_anthracis_Mslice	138388
   75501    76288  |      781        1  |      788      781  |    97.59  |   312600      781  |     0.25   100.00  | B_anthracis_Mslice	138123
   76589    80244  |     3656        1  |     3656     3656  |   100.00  |   312600     3659  |     1.17    99.92  | B_anthracis_Mslice	138262
   80219    92609  |    12394        2  |    12391    12393  |    99.97  |   312600    12394  |     3.96    99.99  | B_anthracis_Mslice	138239
   93043   100464  |     7422        1  |     7422     7422  |   100.00  |   312600     7422  |     2.37   100.00  | B_anthracis_Mslice	138261
  100476   109286  |     8814        4  |     8811     8811  |    99.99  |   312600     8814  |     2.82    99.97  | B_anthracis_Mslice	138186
  109391   113981  |     4590        1  |     4591     4590  |    99.93  |   312600     4590  |     1.47   100.00  | B_anthracis_Mslice	138238
  113952   157080  |    43159       33  |    43129    43127  |    99.99  |   312600    43159  |    13.80    99.93  | B_anthracis_Mslice	138237
  131175   132041  |      863        1  |      867      863  |    98.73  |   312600      863  |     0.28   100.00  | B_anthracis_Mslice	137795
  133048   134036  |        3      985  |      989      983  |    98.38  |   312600      985  |     0.32    99.80  | B_anthracis_Mslice	137797
  156798   187944  |    31147        1  |    31147    31147  |    99.99  |   312600    31149  |     9.96    99.99  | B_anthracis_Mslice	138387
  188452   189423  |      973        1  |      972      973  |    99.79  |   312600      973  |     0.31   100.00  | B_anthracis_Mslice	138043
  189647   190336  |      693        1  |      690      693  |    99.57  |   312600      693  |     0.22   100.00  | B_anthracis_Mslice	138127
  190507   191708  |     1202        1  |     1202     1202  |   100.00  |   312600     1202  |     0.38   100.00  | B_anthracis_Mslice	138059
  191975   200488  |     8514        1  |     8514     8514  |    99.98  |   312600     8514  |     2.72   100.00  | B_anthracis_Mslice	138233
  200483   203490  |     3008        1  |     3008     3008  |   100.00  |   312600     3008  |     0.96   100.00  | B_anthracis_Mslice	138232
  203485   204496  |        1     1012  |     1012     1012  |   100.00  |   312600     1012  |     0.32   100.00  | B_anthracis_Mslice	138088
  204351   205767  |        1     1414  |     1417     1414  |    98.87  |   312600     1414  |     0.45   100.00  | B_anthracis_Mslice	137999
  205825   223920  |    18096        4  |    18096    18093  |    99.98  |   312600    18096  |     5.79    99.98  | B_anthracis_Mslice	138259
  223993   230697  |     6708        3  |     6705     6706  |    99.99  |   312600     6708  |     2.14    99.97  | B_anthracis_Mslice	138236
  230583   235156  |        1     4574  |     4574     4574  |   100.00  |   312600     4574  |     1.46   100.00  | B_anthracis_Mslice	138021
  235270   270455  |        1    35186  |    35186    35186  |    99.99  |   312600    35186  |    11.26   100.00  | B_anthracis_Mslice	138378
  270657   271776  |        1     1120  |     1120     1120  |   100.00  |   312600     1120  |     0.36   100.00  | B_anthracis_Mslice	138045
  272163   282983  |        1    10819  |    10821    10819  |    99.96  |   312600    10819  |     3.46   100.00  | B_anthracis_Mslice	138330
  282914   285798  |        1     2878  |     2885     2878  |    99.65  |   312600     2878  |     0.92   100.00  | B_anthracis_Mslice	138207
  285887   311490  |        1    25604  |    25604    25604  |    99.98  |   312600    25608  |     8.19    99.98  | B_anthracis_Mslice	138208
  294295   295119  |        1      822  |      825      822  |    98.30  |   312600      822  |     0.26   100.00  | B_anthracis_Mslice	137957