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/*
xmunipack - FITS stream for input
Copyright © 2019-22 F.Hroch (hroch@physics.muni.cz)
This file is part of Munipack.
Munipack is free software: you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation, either version 3 of the License, or
(at your option) any later version.
Munipack is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.
You should have received a copy of the GNU General Public License
along with Munipack. If not, see <http://www.gnu.org/licenses/>.
*/
#include "xmunipack.h"
#include "fits.h"
#include "fitsdisplay.h"
#include <fitsio.h>
#include <wx/wx.h>
#include <vector>
#include <algorithm>
using namespace std;
// --- FitsStream -----------------
// A serial loader of FITS files -- a file load process is breaked on chunks,
// and an event is issued when the chunk is successfully loaded.
/*
FITSes can be large files. Ones can be downloaded over the network;
ones should be parsed, and image values should be computed.
The stream loader separate of the loading procedure:
* Headers are red, and passed, as whole, and the calling procedure
is notified.
* Images are read by blocks, every block is reported and passed up.
* Tables are read as blocks, current row order is reported. Table data
are unavailable during load.
Consider:
* The preview handling leads to a complex code (also in View);
I can consider to replace it by a plain progress with percents
only (no frame display).
* Utilising of stream driver of cfitsio can be important for
network downloads.
*/
FitsStream::FitsStream(wxEvtHandler *h, const wxString& fn, int is):
wxThread(wxTHREAD_JOINABLE),handler(h),filename(fn),
shrink(0),icon_size(is),stop(false),stop_wait(false)
{
wxASSERT(handler);
}
void FitsStream::Stop()
{
stop = true;
}
void FitsStream::StopAndWait()
{
stop = true;
stop_wait = true;
}
wxThread::ExitCode FitsStream::Entry()
{
fitsfile *fits;
int status, htype;
vector<FitsHdu> hdu;
// open file
status = 0;
fits_open_file(&fits,filename.fn_str(), READONLY, &status);
if( status == 0 ) {
FitsStreamEvent ev(EVT_FITS_STREAM,ID_FITSLOAD_OPEN);
ev.filename = filename;
wxQueueEvent(handler,ev.Clone());
}
//wxMilliSleep(20000);
// iterate over HDUs
int nhdu = 0;
int chdu;
while ( status == 0 && stop == false ) {
// We're terminating, if there're no more HDUs to read
int mstatus = 0;
fits_movabs_hdu(fits,nhdu+1,&htype,&mstatus);
if( mstatus ) break;
fits_get_hdu_num(fits,&chdu);
nhdu = nhdu + 1;
// load header
int nhead;
char h[FLEN_CARD];
FitsHeader head;
fits_get_hdrspace(fits,&nhead,NULL,&status);
for(int n = 0; n < nhead && status == 0; n++) {
if( fits_read_record(fits,n+1,h,&status) == 0 )
head.Add(wxString::FromAscii(h));
}
if( status || stop ) break;
// determine HDU type
hdu_type hdutype = head.GetType(htype);
hdu_flavour flavour = head.GetFlavour(htype,hdutype);
FitsStreamEvent ev(EVT_FITS_STREAM,ID_FITSLOAD_HEAD);
ev.head = head;
ev.extname = head.GetKey("EXTNAME");
ev.hdutype = hdutype;
ev.flavour = flavour;
ev.chdu = chdu;
wxQueueEvent(handler,ev.Clone());
// decode current HDU
if( htype == IMAGE_HDU ) {
int bitpix, naxis;
fits_get_img_type(fits,&bitpix,&status);
fits_get_img_dim(fits,&naxis,&status);
if( status ) break;
// header only
if( hdutype == HDU_HEAD ) {
hdu.push_back(FitsHdu(head,htype));
FitsStreamEvent ev(EVT_FITS_STREAM,ID_FITSLOAD_HEADONLY);
ev.chdu = chdu;
wxQueueEvent(handler,ev.Clone());
}
// full image
else {
float *nullval = 0;
int anynul;
long *naxes = new long[naxis];
fits_get_img_size(fits,naxis,naxes,&status);
if( status ) { delete[] naxes; break; }
FitsStreamEvent ev(EVT_FITS_STREAM,ID_FITSLOAD_IMGHEAD);
ev.chdu = chdu;
ev.bitpix = bitpix;
ev.naxis = naxis;
vector<long> maxes(naxes,naxes+naxis);
ev.naxes = maxes;
ev.progress = 0;
wxQueueEvent(handler,ev.Clone());
long ndata = 1;
for(int i = 0; i < naxis; i++ ) ndata = ndata*naxes[i];
float *image = new float[ndata];
if( image == 0 ) {
status = -1;
wxLogError("Failed to allocate memory for an image.");
}
if( hdutype == HDU_IMAGE &&
(flavour == HDU_IMAGE_FRAME || flavour == HDU_IMAGE_COLOUR) ) {
// regular images
wxASSERT((naxis == 2 || naxis == 3) && naxes[0] > 0);
long coffset = naxes[0] * naxes[1];
int maxk = naxis == 3 ? 3 : 1;
for(int k = 0; k < maxk; k++) {
long maxrows = wxMax((NIOBUF*IOBUFLEN) / (sizeof(float)*naxes[0]),1L);
wxASSERT(maxrows > 0);
long jrow = 0;
for(long j = 0; j < naxes[1]; j += maxrows) {
long nrows = std::min(maxrows,naxes[1]-j);
long nelements = nrows*naxes[0];
wxASSERT(nelements > 0);
long offset = naxes[0]*j + k*coffset;
long fpixel = offset + 1;
float *ptr = image + offset;
fits_read_img(fits,TFLOAT,fpixel,nelements,nullval,
ptr,&anynul,&status);
if( status ) goto crash;
FitsStreamEvent ev(EVT_FITS_STREAM,ID_FITSLOAD_IMAGE);
ev.chdu = chdu;
ev.cube = k+1;
ev.crow = j+1;
ev.progress = double(j+nrows)/double(maxes[0]);
wxQueueEvent(handler,ev.Clone());
if( chdu == 1 ) {
if( j == 0 && tone.IsOk() == false ) {
tone = FitsTone(nelements,ptr);
tone.SetQblack(0.0);
tone.SetRsense(0.05);
}
if( shrink > 0 && j > jrow + shrink ) {
FitsStreamEvent pev(EVT_FITS_STREAM,ID_FITSLOAD_IMGPREVIEW);
pev.chdu = chdu;
pev.cube = k+1;
pev.crow = j+1;
long off = naxes[0]*jrow + k*coffset;
pev.preview = RenderPreview(naxes[0],j-jrow+1,image+off);
pev.naxes = maxes;
pev.progress = double(j+nrows)/double(maxes[0]);
wxQueueEvent(handler,pev.Clone());
jrow = j;
}
}
if( stop ) goto crash;
// wxMilliSleep(250);
}
}
}
else {
// line, cube, no preview, needs testing
long bufsize = NIOBUF*IOBUFLEN;
long blocksize= bufsize / sizeof(float);
long nblocks = ndata / blocksize + 1;
// wxLogDebug("%d %d %dx%d",int(bufsize),int(nblocks),int(naxes[0]),int(naxes[1]));
for(long j = 0; j < nblocks; j++) {
long nelements = std::min(blocksize,ndata-j*blocksize);
long offset = j*blocksize;
long fpixel = offset + 1;
float *ptr = image + offset;
// wxLogDebug("%d %d",int(j),int(nelements));
fits_read_img(fits,TFLOAT,fpixel,nelements,nullval,
ptr,&anynul,&status);
if( status ) goto crash;
if( stop ) goto crash;
// wxMilliSleep(25);
}
}
crash:
if( status == 0 && stop == false ) {
hdu.push_back(FitsArray(head,htype,naxis,naxes,image));
}
else {
delete[] naxes;
delete[] image;
break;
}
}
}
else if( htype == ASCII_TBL || htype == BINARY_TBL ) {
long nrows, ncols, srows;
int nc;
fits_get_num_rows(fits,&nrows,&status);
fits_get_num_cols(fits,&nc,&status);
if( status ) break;
ncols = nc;
vector<FitsTableColumn> cols;
// initialise full table
for(int k = 0; k < ncols && status == 0; k++ ) {
int colnum = k + 1;
int typecode;
long repeat, width;
fits_get_coltype(fits,colnum,&typecode,&repeat,&width,&status);
if( status == 0 )
cols.push_back(FitsTableColumn(typecode,repeat,width,nrows));
}
if( status ) break;
FitsStreamEvent ev(EVT_FITS_STREAM,ID_FITSLOAD_TBLHEAD);
ev.nrows = nrows;
ev.ncols = ncols;
ev.chdu = chdu;
wxQueueEvent(handler,ev.Clone());
fits_get_rowsize(fits,&srows,&status);
for(long row = 0; row < nrows && stop == false; row = row + srows) {
long felem = 1;
long frow = row + 1;
long nelem = min(srows,nrows-row);
for(int col = 0; col < ncols; col++ ) {
int colnum = col + 1;
int typecode, anynul;
long repeat, width;
fits_get_coltype(fits,colnum,&typecode,&repeat,&width,&status);
if( typecode == TSTRING ) {
char **a = cols[col].GetData_string();
char *nullval = 0;
fits_read_col(fits,TSTRING,colnum, frow, felem, nelem, &nullval,
a+row,&anynul,&status);
}
else if( typecode == TLOGICAL ) {
bool *b = cols[col].GetData_bool();
bool nullval = false;
fits_read_col(fits,TLOGICAL,colnum, frow, felem, nelem, &nullval,
b+row,&anynul,&status);
}
else if( typecode == TBYTE || typecode == TBIT ) {
char *b = cols[col].GetData_char();
char nullval = ' ';
fits_read_col(fits,TBYTE,colnum, frow, felem, nelem, &nullval,
b+row,&anynul,&status);
}
else if( typecode == TSHORT ) {
short *d = cols[col].GetData_short();
short nullval = 0;
fits_read_col(fits,TSHORT,colnum, frow, felem, nelem, &nullval,
d+row,&anynul,&status);
}
else if( typecode == TLONG || typecode == TINT32BIT ) {
long *d = cols[col].GetData_long();
long nullval = 0;
fits_read_col(fits,TLONG,colnum, frow, felem, nelem, &nullval,
d+row,&anynul,&status);
}
else if( typecode == TFLOAT ) {
float *d = cols[col].GetData_float();
float nullval = 0.0;
fits_read_col(fits,TFLOAT,colnum, frow, felem, nelem, &nullval,
d+row,&anynul,&status);
}
else if( typecode == TDOUBLE ) {
double *d = cols[col].GetData_double();
double nullval = 0.0;
fits_read_col(fits,TDOUBLE,colnum, frow, felem, nelem, &nullval,
d+row,&anynul,&status);
}
else
wxLogWarning("FitsStream: The type code `%d' not implemented yet.",
typecode);
if( status || stop ) goto clash;
/*
Tables are read as blocks of rows according to cFISTIO recommendations.
We are notifying calling thread by current row. No data are passed --
tables shouldn't been the first HDU. The only first HDU will be
displayed during FITS opening.
*/
}
FitsStreamEvent ev(EVT_FITS_STREAM,ID_FITSLOAD_TABLE);
ev.chdu = chdu;
ev.crow = row + 1;
ev.nrows = nrows;
ev.ncols = ncols;
ev.progress = double(row+nelem)/double(nrows);
wxQueueEvent(handler,ev.Clone());
// wxMilliSleep(1000);
}
clash:
hdu.push_back(FitsTable(head,htype,cols));
}
else {
wxLogWarning("FitsStream: Unrecognized htype code `%d'.",htype);
}
FitsStreamEvent fv(EVT_FITS_STREAM,ID_FITSLOAD_HDUFIN);
ev.chdu = chdu;
wxQueueEvent(handler,fv.Clone());
}
// close file
fits_close_file(fits, &status);
// wxLogDebug("********** %d %d %d",status,stop,stop_wait);
if( status == 0 ) {
if( stop_wait )
;
else if( stop ) {
FitsStreamEvent ev(EVT_FITS_STREAM,ID_FITSLOAD_INTERRUPT);
ev.filename = filename;
ev.errmsg = "An interrupt on request.";
wxQueueEvent(handler,ev.Clone());
} else {
FitsFile fitsfile(filename,hdu);
vector<FitsTone> tones;
for(size_t k = 0; k < hdu.size(); k++)
if( hdu.at(k).IsDisplayImplemented() ) {
FitsTone tone(FitsArray(hdu.at(k)));
tones.push_back(tone);
}
else {
FitsTone tone;
tones.push_back(tone);
}
vector<wxImage> icons;
make_icons(fitsfile,tones,icons);
FitsStreamEvent ev(EVT_FITS_STREAM,ID_FITSLOAD_FINISH);
ev.filename = filename;
ev.fitsfile = fitsfile;
ev.icons = icons;
ev.tones = tones;
wxQueueEvent(handler,ev.Clone());
}
}
else {
// save error description
char emsg[FLEN_ERRMSG];
char msg[FLEN_STATUS];
wxArrayString errlog;
while( fits_read_errmsg(emsg) )
errlog.Add(wxString::FromAscii(emsg));
fits_get_errstatus(status,msg);
FitsStreamEvent ev(EVT_FITS_STREAM,ID_FITSLOAD_CRASH);
ev.filename = filename;
ev.errmsg = wxString::FromAscii(msg);
ev.errlog = errlog;
wxQueueEvent(handler,ev.Clone());
}
return (wxThread::ExitCode) 0;
}
wxImage FitsStream::RenderPreview(int width, int height, const float *ptr)
{
wxASSERT(shrink > 0);
double zoom = 1.0 / shrink;
int canvas_width = int(width * zoom + 1);
int canvas_height = int(height * zoom + 1);
wxASSERT(canvas_width > 0 && canvas_height > 0);
int npix = canvas_width*canvas_height;
int nbytes = 3*npix*sizeof(unsigned char);
unsigned char *d = (unsigned char *) malloc(nbytes);
memset(d,0,nbytes);
for(int j = 0; j < canvas_height; j++) {
int jj = shrink*j;
unsigned char *line = d + 3*j*canvas_width;
const float *pline = ptr + wxMax(height-1-jj,0)*width;
for(long i = 0; i < canvas_width; i++) {
int ii = wxMin(shrink*i,width);
//wxLogDebug("%d %d %d %d",int(i),int(j),int(ii),int(jj));
float f = tone.Scale(pline[ii]);
unsigned char rgb = std::min(std::max(int(255*f),0),255);
memset(line+3*i,rgb,3);
}
}
return wxImage(canvas_width,canvas_height,d);
}
void FitsStream::SetZoom(float z)
{
if( shrink > 0 ) return;
if( z < 1.01 )
shrink = int(1.0 / z + 0.5);
else
shrink = 1;
}
void FitsStream::make_icons(const FitsFile& fits, const vector<FitsTone>& tones,
vector<wxImage>& icons)
{
wxLogDebug("FitsStream:: making icons");
wxASSERT(fits.IsOk());
// for images, estimate stat. parameters of all HDUs, and make icons
for(size_t k = 0; k < fits.HduCount(); k++) {
if( fits.Hdu(k).IsDisplayImplemented() ) {
FitsArray array(fits.Hdu(k));
FitsDisplay display(array.IsColour());
display.SetTone(tones[k]);
wxImage icon = display.MakeIcon(array,icon_size,icon_size);
icons.push_back(icon);
}
else {
icons.push_back(wxImage());
}
}
}
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