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Source: murasaki
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders: Andreas Tille <tille@debian.org>, Nilesh Patra <nilesh@debian.org>
Section: science
Priority: optional
Build-Depends: debhelper-compat (= 13),
libboost-regex-dev,
libboost-iostreams-dev,
libboost-filesystem-dev,
libterm-readkey-perl,
libtext-wrapper-perl,
libcrypto++-dev,
libpstreams-dev,
libopenmpi-dev
Standards-Version: 4.5.1
Vcs-Browser: https://salsa.debian.org/med-team/murasaki
Vcs-Git: https://salsa.debian.org/med-team/murasaki.git
Homepage: http://murasaki.dna.bio.keio.ac.jp/wiki/
Rules-Requires-Root: no
Package: murasaki
Architecture: any
Depends: murasaki-common,
${shlibs:Depends},
${misc:Depends}
Description: homology detection tool across multiple large genomes
Murasaki is a scalable and fast, language theory-based homology
detection tool across multiple large genomes. It enable whole-genome
scale multiple genome global alignments. Supports unlimited length
gapped-seed patterns and unique TF-IDF based filtering.
.
Murasaki is an anchor alignment software, which is
* exteremely fast (17 CPU hours for whole Human x Mouse genome (with
40 nodes: 52 wall minutes))
* scalable (Arbitrarily parallelizable across multiple nodes using MPI.
Even a single node with 16GB of ram can handle over 1Gbp of sequence.)
* unlimited pattern length
* repeat tolerant
* intelligent noise reduction
Package: murasaki-mpi
Architecture: any
Depends: murasaki-common,
${shlibs:Depends},
${misc:Depends}
Description: homology detection tool across multiple large genomes (MPI-version)
Murasaki is a scalable and fast, language theory-based homology
detection tool across multiple large genomes. It enable whole-genome
scale multiple genome global alignments. Supports unlimited length
gapped-seed patterns and unique TF-IDF based filtering.
.
Murasaki is an anchor alignment software, which is
* exteremely fast (17 CPU hours for whole Human x Mouse genome (with
40 nodes: 52 wall minutes))
* scalable (Arbitrarily parallelizable across multiple nodes using MPI.
Even a single node with 16GB of ram can handle over 1Gbp of sequence.)
* unlimited pattern length
* repeat tolerant
* intelligent noise reduction
.
This package provides the MPI-enabled binary for murasaki. While this
will speed up operation on multi-processor machines it will slow down
on a single processor.
Package: murasaki-common
Architecture: all
Depends: ${misc:Depends},
${misc:perl},
gnuplot | gnuplot5,
libbio-perl-perl,
r-cran-rocr,
imagemagick
Recommends: libterm-readkey-perl,
libtext-wrapi18n-perl | libtext-wrapper-perl
Description: homology detection tool across multiple large genomes (common files)
Murasaki is a scalable and fast, language theory-based homology
detection tool across multiple large genomes. It enable whole-genome
scale multiple genome global alignments. Supports unlimited length
gapped-seed patterns and unique TF-IDF based filtering.
.
Murasaki is an anchor alignment software, which is
* exteremely fast (17 CPU hours for whole Human x Mouse genome (with
40 nodes: 52 wall minutes))
* scalable (Arbitrarily parallelizable across multiple nodes using MPI.
Even a single node with 16GB of ram can handle over 1Gbp of sequence.)
* unlimited pattern length
* repeat tolerant
* intelligent noise reduction
.
This package contains all files that are common to the single core murasaki
package and the multi core murasaki-mpi package.
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