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#include "muscle.h"
#include "profile.h"
extern SCOREMATRIX VTML_LA;
extern SCOREMATRIX PAM200;
extern SCOREMATRIX PAM200NoCenter;
extern SCOREMATRIX VTML_SP;
extern SCOREMATRIX VTML_SPNoCenter;
extern SCOREMATRIX NUC_SP;
PTR_SCOREMATRIX g_ptrScoreMatrix;
void SetScoreMatrix()
{
switch (g_PPScore)
{
case PPSCORE_LE:
g_ptrScoreMatrix = &VTML_LA;
break;
case PPSCORE_SP:
if (g_bPrecompiledCenter)
g_ptrScoreMatrix = &PAM200;
else
g_ptrScoreMatrix = &PAM200NoCenter;
break;
case PPSCORE_SV:
if (g_bPrecompiledCenter)
g_ptrScoreMatrix = &VTML_SP;
else
g_ptrScoreMatrix = &VTML_SPNoCenter;
break;
case PPSCORE_SPN:
if (g_bPrecompiledCenter)
g_ptrScoreMatrix = &NUC_SP;
else
Quit("SPN requires precompiled center");
break;
default:
Quit("Invalid g_PPScore");
}
}
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