1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231 232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247 248 249 250 251 252 253 254 255 256 257 258 259 260 261 262 263 264 265 266 267 268 269 270 271 272 273 274 275 276 277 278 279 280 281 282 283 284 285 286 287 288 289 290 291 292 293 294 295 296 297 298 299 300 301 302 303 304 305 306 307 308 309 310 311 312 313 314 315 316 317 318 319 320 321 322 323 324 325 326 327 328 329 330 331 332 333 334 335 336 337 338 339 340 341 342 343 344 345 346 347 348 349 350 351 352 353 354 355 356 357 358 359 360 361 362 363 364 365 366 367 368 369 370 371 372 373 374 375 376 377 378 379 380 381 382 383 384 385 386 387 388 389 390 391 392 393 394 395 396 397 398 399 400 401 402 403 404 405 406 407 408 409 410 411 412 413 414 415 416 417 418 419 420 421 422 423 424 425 426 427 428 429 430 431 432 433 434 435 436 437 438 439 440 441 442 443 444 445 446 447 448 449 450 451 452 453 454 455 456 457 458 459 460 461 462 463 464 465 466 467 468 469 470 471 472 473 474 475 476 477 478 479 480 481 482 483 484 485 486 487 488 489 490 491 492 493 494 495 496 497 498 499 500 501 502 503 504 505 506 507 508 509 510 511 512 513 514 515 516 517 518 519 520 521 522 523 524 525 526 527 528 529 530 531 532 533 534 535 536 537 538 539 540 541 542 543 544 545 546 547 548 549 550 551 552 553 554 555 556 557 558 559 560 561 562 563 564 565 566 567 568 569 570 571 572 573 574 575 576 577 578 579 580 581 582 583 584 585 586 587 588 589 590 591 592 593 594 595 596 597 598 599 600 601 602 603 604 605 606 607 608 609 610 611 612 613 614 615 616 617 618 619 620 621 622 623 624 625 626 627 628 629 630 631 632 633 634 635 636 637 638 639 640 641 642 643 644 645 646 647 648 649 650 651 652 653 654 655 656 657 658 659 660
|
/* Copyright (c) 2001, 2010, Oracle and/or its affiliates. All rights reserved.
This program is free software; you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation; version 2 of the License.
This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.
You should have received a copy of the GNU General Public License
along with this program; if not, write to the Free Software
Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA */
/*
Function to handle quick removal of duplicates
This code is used when doing multi-table deletes to find the rows in
reference tables that needs to be deleted.
The basic idea is as follows:
Store first all strings in a binary tree, ignoring duplicates.
When the tree uses more memory than 'max_heap_table_size',
write the tree (in sorted order) out to disk and start with a new tree.
When all data has been generated, merge the trees (removing any found
duplicates).
The unique entries will be returned in sort order, to ensure that we do the
deletes in disk order.
*/
#include "sql_priv.h"
#include "unireg.h"
#include "sql_sort.h"
#include "queues.h" // QUEUE
#include "my_tree.h" // element_count
#include "sql_class.h" // Unique
int unique_write_to_file(uchar* key, element_count count, Unique *unique)
{
/*
Use unique->size (size of element stored in the tree) and not
unique->tree.size_of_element. The latter is different from unique->size
when tree implementation chooses to store pointer to key in TREE_ELEMENT
(instead of storing the element itself there)
*/
return my_b_write(&unique->file, key, unique->size) ? 1 : 0;
}
int unique_write_to_ptrs(uchar* key, element_count count, Unique *unique)
{
memcpy(unique->record_pointers, key, unique->size);
unique->record_pointers+=unique->size;
return 0;
}
Unique::Unique(qsort_cmp2 comp_func, void * comp_func_fixed_arg,
uint size_arg, ulonglong max_in_memory_size_arg)
:max_in_memory_size(max_in_memory_size_arg),
record_pointers(NULL),
size(size_arg),
elements(0)
{
my_b_clear(&file);
init_tree(&tree, (ulong) (max_in_memory_size / 16), 0, size, comp_func, 0,
NULL, comp_func_fixed_arg);
/* If the following fail's the next add will also fail */
my_init_dynamic_array(&file_ptrs, sizeof(BUFFPEK), 16, 16);
/*
If you change the following, change it in get_max_elements function, too.
*/
max_elements= (ulong) (max_in_memory_size /
ALIGN_SIZE(sizeof(TREE_ELEMENT)+size));
(void) open_cached_file(&file, mysql_tmpdir,TEMP_PREFIX, DISK_BUFFER_SIZE,
MYF(MY_WME));
}
/*
Calculate log2(n!)
NOTES
Stirling's approximate formula is used:
n! ~= sqrt(2*M_PI*n) * (n/M_E)^n
Derivation of formula used for calculations is as follows:
log2(n!) = log(n!)/log(2) = log(sqrt(2*M_PI*n)*(n/M_E)^n) / log(2) =
= (log(2*M_PI*n)/2 + n*log(n/M_E)) / log(2).
*/
inline double log2_n_fact(double x)
{
return (log(2*M_PI*x)/2 + x*log(x/M_E)) / M_LN2;
}
/*
Calculate cost of merge_buffers function call for given sequence of
input stream lengths and store the number of rows in result stream in *last.
SYNOPSIS
get_merge_buffers_cost()
buff_elems Array of #s of elements in buffers
elem_size Size of element stored in buffer
first Pointer to first merged element size
last Pointer to last merged element size
RETURN
Cost of merge_buffers operation in disk seeks.
NOTES
It is assumed that no rows are eliminated during merge.
The cost is calculated as
cost(read_and_write) + cost(merge_comparisons).
All bytes in the sequences is read and written back during merge so cost
of disk io is 2*elem_size*total_buf_elems/IO_SIZE (2 is for read + write)
For comparisons cost calculations we assume that all merged sequences have
the same length, so each of total_buf_size elements will be added to a sort
heap with (n_buffers-1) elements. This gives the comparison cost:
total_buf_elems* log2(n_buffers) / TIME_FOR_COMPARE_ROWID;
*/
static double get_merge_buffers_cost(uint *buff_elems, uint elem_size,
uint *first, uint *last)
{
uint total_buf_elems= 0;
for (uint *pbuf= first; pbuf <= last; pbuf++)
total_buf_elems+= *pbuf;
*last= total_buf_elems;
size_t n_buffers= last - first + 1;
/* Using log2(n)=log(n)/log(2) formula */
return 2*((double)total_buf_elems*elem_size) / IO_SIZE +
total_buf_elems*log((double) n_buffers) / (TIME_FOR_COMPARE_ROWID * M_LN2);
}
/*
Calculate cost of merging buffers into one in Unique::get, i.e. calculate
how long (in terms of disk seeks) the two calls
merge_many_buffs(...);
merge_buffers(...);
will take.
SYNOPSIS
get_merge_many_buffs_cost()
buffer buffer space for temporary data, at least
Unique::get_cost_calc_buff_size bytes
maxbuffer # of full buffers
max_n_elems # of elements in first maxbuffer buffers
last_n_elems # of elements in last buffer
elem_size size of buffer element
NOTES
maxbuffer+1 buffers are merged, where first maxbuffer buffers contain
max_n_elems elements each and last buffer contains last_n_elems elements.
The current implementation does a dumb simulation of merge_many_buffs
function actions.
RETURN
Cost of merge in disk seeks.
*/
static double get_merge_many_buffs_cost(uint *buffer,
uint maxbuffer, uint max_n_elems,
uint last_n_elems, int elem_size)
{
register int i;
double total_cost= 0.0;
uint *buff_elems= buffer; /* #s of elements in each of merged sequences */
/*
Set initial state: first maxbuffer sequences contain max_n_elems elements
each, last sequence contains last_n_elems elements.
*/
for (i = 0; i < (int)maxbuffer; i++)
buff_elems[i]= max_n_elems;
buff_elems[maxbuffer]= last_n_elems;
/*
Do it exactly as merge_many_buff function does, calling
get_merge_buffers_cost to get cost of merge_buffers.
*/
if (maxbuffer >= MERGEBUFF2)
{
while (maxbuffer >= MERGEBUFF2)
{
uint lastbuff= 0;
for (i = 0; i <= (int) maxbuffer - MERGEBUFF*3/2; i += MERGEBUFF)
{
total_cost+=get_merge_buffers_cost(buff_elems, elem_size,
buff_elems + i,
buff_elems + i + MERGEBUFF-1);
lastbuff++;
}
total_cost+=get_merge_buffers_cost(buff_elems, elem_size,
buff_elems + i,
buff_elems + maxbuffer);
maxbuffer= lastbuff;
}
}
/* Simulate final merge_buff call. */
total_cost += get_merge_buffers_cost(buff_elems, elem_size,
buff_elems, buff_elems + maxbuffer);
return total_cost;
}
/*
Calculate cost of using Unique for processing nkeys elements of size
key_size using max_in_memory_size memory.
SYNOPSIS
Unique::get_use_cost()
buffer space for temporary data, use Unique::get_cost_calc_buff_size
to get # bytes needed.
nkeys #of elements in Unique
key_size size of each elements in bytes
max_in_memory_size amount of memory Unique will be allowed to use
RETURN
Cost in disk seeks.
NOTES
cost(using_unqiue) =
cost(create_trees) + (see #1)
cost(merge) + (see #2)
cost(read_result) (see #3)
1. Cost of trees creation
For each Unique::put operation there will be 2*log2(n+1) elements
comparisons, where n runs from 1 tree_size (we assume that all added
elements are different). Together this gives:
n_compares = 2*(log2(2) + log2(3) + ... + log2(N+1)) = 2*log2((N+1)!)
then cost(tree_creation) = n_compares*ROWID_COMPARE_COST;
Total cost of creating trees:
(n_trees - 1)*max_size_tree_cost + non_max_size_tree_cost.
Approximate value of log2(N!) is calculated by log2_n_fact function.
2. Cost of merging.
If only one tree is created by Unique no merging will be necessary.
Otherwise, we model execution of merge_many_buff function and count
#of merges. (The reason behind this is that number of buffers is small,
while size of buffers is big and we don't want to loose precision with
O(x)-style formula)
3. If only one tree is created by Unique no disk io will happen.
Otherwise, ceil(key_len*n_keys) disk seeks are necessary. We assume
these will be random seeks.
*/
double Unique::get_use_cost(uint *buffer, uint nkeys, uint key_size,
ulonglong max_in_memory_size)
{
ulong max_elements_in_tree;
ulong last_tree_elems;
int n_full_trees; /* number of trees in unique - 1 */
double result;
max_elements_in_tree= ((ulong) max_in_memory_size /
ALIGN_SIZE(sizeof(TREE_ELEMENT)+key_size));
n_full_trees= nkeys / max_elements_in_tree;
last_tree_elems= nkeys % max_elements_in_tree;
/* Calculate cost of creating trees */
result= 2*log2_n_fact(last_tree_elems + 1.0);
if (n_full_trees)
result+= n_full_trees * log2_n_fact(max_elements_in_tree + 1.0);
result /= TIME_FOR_COMPARE_ROWID;
DBUG_PRINT("info",("unique trees sizes: %u=%u*%lu + %lu", nkeys,
n_full_trees, n_full_trees?max_elements_in_tree:0,
last_tree_elems));
if (!n_full_trees)
return result;
/*
There is more then one tree and merging is necessary.
First, add cost of writing all trees to disk, assuming that all disk
writes are sequential.
*/
result += DISK_SEEK_BASE_COST * n_full_trees *
ceil(((double) key_size)*max_elements_in_tree / IO_SIZE);
result += DISK_SEEK_BASE_COST * ceil(((double) key_size)*last_tree_elems / IO_SIZE);
/* Cost of merge */
double merge_cost= get_merge_many_buffs_cost(buffer, n_full_trees,
max_elements_in_tree,
last_tree_elems, key_size);
if (merge_cost < 0.0)
return merge_cost;
result += merge_cost;
/*
Add cost of reading the resulting sequence, assuming there were no
duplicate elements.
*/
result += ceil((double)key_size*nkeys/IO_SIZE);
return result;
}
Unique::~Unique()
{
close_cached_file(&file);
delete_tree(&tree);
delete_dynamic(&file_ptrs);
}
/* Write tree to disk; clear tree */
bool Unique::flush()
{
BUFFPEK file_ptr;
elements+= tree.elements_in_tree;
file_ptr.count=tree.elements_in_tree;
file_ptr.file_pos=my_b_tell(&file);
if (tree_walk(&tree, (tree_walk_action) unique_write_to_file,
(void*) this, left_root_right) ||
insert_dynamic(&file_ptrs, (uchar*) &file_ptr))
return 1;
delete_tree(&tree);
return 0;
}
/*
Clear the tree and the file.
You must call reset() if you want to reuse Unique after walk().
*/
void
Unique::reset()
{
reset_tree(&tree);
/*
If elements != 0, some trees were stored in the file (see how
flush() works). Note, that we can not count on my_b_tell(&file) == 0
here, because it can return 0 right after walk(), and walk() does not
reset any Unique member.
*/
if (elements)
{
reset_dynamic(&file_ptrs);
reinit_io_cache(&file, WRITE_CACHE, 0L, 0, 1);
}
elements= 0;
}
/*
The comparison function, passed to queue_init() in merge_walk() and in
merge_buffers() when the latter is called from Uniques::get() must
use comparison function of Uniques::tree, but compare members of struct
BUFFPEK.
*/
C_MODE_START
static int buffpek_compare(void *arg, uchar *key_ptr1, uchar *key_ptr2)
{
BUFFPEK_COMPARE_CONTEXT *ctx= (BUFFPEK_COMPARE_CONTEXT *) arg;
return ctx->key_compare(ctx->key_compare_arg,
*((uchar **) key_ptr1), *((uchar **)key_ptr2));
}
C_MODE_END
/*
DESCRIPTION
Function is very similar to merge_buffers, but instead of writing sorted
unique keys to the output file, it invokes walk_action for each key.
This saves I/O if you need to pass through all unique keys only once.
SYNOPSIS
merge_walk()
All params are 'IN' (but see comment for begin, end):
merge_buffer buffer to perform cached piece-by-piece loading
of trees; initially the buffer is empty
merge_buffer_size size of merge_buffer. Must be aligned with
key_length
key_length size of tree element; key_length * (end - begin)
must be less or equal than merge_buffer_size.
begin pointer to BUFFPEK struct for the first tree.
end pointer to BUFFPEK struct for the last tree;
end > begin and [begin, end) form a consecutive
range. BUFFPEKs structs in that range are used and
overwritten in merge_walk().
walk_action element visitor. Action is called for each unique
key.
walk_action_arg argument to walk action. Passed to it on each call.
compare elements comparison function
compare_arg comparison function argument
file file with all trees dumped. Trees in the file
must contain sorted unique values. Cache must be
initialized in read mode.
RETURN VALUE
0 ok
<> 0 error
*/
static bool merge_walk(uchar *merge_buffer, ulong merge_buffer_size,
uint key_length, BUFFPEK *begin, BUFFPEK *end,
tree_walk_action walk_action, void *walk_action_arg,
qsort_cmp2 compare, void *compare_arg,
IO_CACHE *file)
{
BUFFPEK_COMPARE_CONTEXT compare_context = { compare, compare_arg };
QUEUE queue;
if (end <= begin ||
merge_buffer_size < (ulong) (key_length * (end - begin + 1)) ||
init_queue(&queue, (uint) (end - begin), offsetof(BUFFPEK, key), 0,
buffpek_compare, &compare_context))
return 1;
/* we need space for one key when a piece of merge buffer is re-read */
merge_buffer_size-= key_length;
uchar *save_key_buff= merge_buffer + merge_buffer_size;
uint max_key_count_per_piece= (uint) (merge_buffer_size/(end-begin) /
key_length);
/* if piece_size is aligned reuse_freed_buffer will always hit */
uint piece_size= max_key_count_per_piece * key_length;
uint bytes_read; /* to hold return value of read_to_buffer */
BUFFPEK *top;
int res= 1;
/*
Invariant: queue must contain top element from each tree, until a tree
is not completely walked through.
Here we're forcing the invariant, inserting one element from each tree
to the queue.
*/
for (top= begin; top != end; ++top)
{
top->base= merge_buffer + (top - begin) * piece_size;
top->max_keys= max_key_count_per_piece;
bytes_read= read_to_buffer(file, top, key_length);
if (bytes_read == (uint) (-1))
goto end;
DBUG_ASSERT(bytes_read);
queue_insert(&queue, (uchar *) top);
}
top= (BUFFPEK *) queue_top(&queue);
while (queue.elements > 1)
{
/*
Every iteration one element is removed from the queue, and one is
inserted by the rules of the invariant. If two adjacent elements on
the top of the queue are not equal, biggest one is unique, because all
elements in each tree are unique. Action is applied only to unique
elements.
*/
void *old_key= top->key;
/*
read next key from the cache or from the file and push it to the
queue; this gives new top.
*/
top->key+= key_length;
if (--top->mem_count)
queue_replaced(&queue);
else /* next piece should be read */
{
/* save old_key not to overwrite it in read_to_buffer */
memcpy(save_key_buff, old_key, key_length);
old_key= save_key_buff;
bytes_read= read_to_buffer(file, top, key_length);
if (bytes_read == (uint) (-1))
goto end;
else if (bytes_read > 0) /* top->key, top->mem_count are reset */
queue_replaced(&queue); /* in read_to_buffer */
else
{
/*
Tree for old 'top' element is empty: remove it from the queue and
give all its memory to the nearest tree.
*/
queue_remove(&queue, 0);
reuse_freed_buff(&queue, top, key_length);
}
}
top= (BUFFPEK *) queue_top(&queue);
/* new top has been obtained; if old top is unique, apply the action */
if (compare(compare_arg, old_key, top->key))
{
if (walk_action(old_key, 1, walk_action_arg))
goto end;
}
}
/*
Applying walk_action to the tail of the last tree: this is safe because
either we had only one tree in the beginning, either we work with the
last tree in the queue.
*/
do
{
do
{
if (walk_action(top->key, 1, walk_action_arg))
goto end;
top->key+= key_length;
}
while (--top->mem_count);
bytes_read= read_to_buffer(file, top, key_length);
if (bytes_read == (uint) (-1))
goto end;
}
while (bytes_read);
res= 0;
end:
delete_queue(&queue);
return res;
}
/*
DESCRIPTION
Walks consecutively through all unique elements:
if all elements are in memory, then it simply invokes 'tree_walk', else
all flushed trees are loaded to memory piece-by-piece, pieces are
sorted, and action is called for each unique value.
Note: so as merging resets file_ptrs state, this method can change
internal Unique state to undefined: if you want to reuse Unique after
walk() you must call reset() first!
SYNOPSIS
Unique:walk()
All params are 'IN':
action function-visitor, typed in include/my_tree.h
function is called for each unique element
arg argument for visitor, which is passed to it on each call
RETURN VALUE
0 OK
<> 0 error
*/
bool Unique::walk(tree_walk_action action, void *walk_action_arg)
{
int res;
uchar *merge_buffer;
if (elements == 0) /* the whole tree is in memory */
return tree_walk(&tree, action, walk_action_arg, left_root_right);
/* flush current tree to the file to have some memory for merge buffer */
if (flush())
return 1;
if (flush_io_cache(&file) || reinit_io_cache(&file, READ_CACHE, 0L, 0, 0))
return 1;
if (!(merge_buffer= (uchar *) my_malloc((ulong) max_in_memory_size, MYF(0))))
return 1;
res= merge_walk(merge_buffer, (ulong) max_in_memory_size, size,
(BUFFPEK *) file_ptrs.buffer,
(BUFFPEK *) file_ptrs.buffer + file_ptrs.elements,
action, walk_action_arg,
tree.compare, tree.custom_arg, &file);
my_free(merge_buffer);
return res;
}
/*
Modify the TABLE element so that when one calls init_records()
the rows will be read in priority order.
*/
bool Unique::get(TABLE *table)
{
SORTPARAM sort_param;
table->sort.found_records=elements+tree.elements_in_tree;
if (my_b_tell(&file) == 0)
{
/* Whole tree is in memory; Don't use disk if you don't need to */
DBUG_ASSERT(table->sort.record_pointers == NULL);
if ((record_pointers=table->sort.record_pointers= (uchar*)
my_malloc(size * tree.elements_in_tree, MYF(0))))
{
(void) tree_walk(&tree, (tree_walk_action) unique_write_to_ptrs,
this, left_root_right);
return 0;
}
}
/* Not enough memory; Save the result to file && free memory used by tree */
if (flush())
return 1;
IO_CACHE *outfile=table->sort.io_cache;
BUFFPEK *file_ptr= (BUFFPEK*) file_ptrs.buffer;
uint maxbuffer= file_ptrs.elements - 1;
uchar *sort_buffer;
my_off_t save_pos;
bool error=1;
/* Open cached file if it isn't open */
DBUG_ASSERT(table->sort.io_cache == NULL);
outfile=table->sort.io_cache=(IO_CACHE*) my_malloc(sizeof(IO_CACHE),
MYF(MY_ZEROFILL));
if (!outfile || (! my_b_inited(outfile) &&
open_cached_file(outfile,mysql_tmpdir,TEMP_PREFIX,READ_RECORD_BUFFER,
MYF(MY_WME))))
return 1;
reinit_io_cache(outfile,WRITE_CACHE,0L,0,0);
bzero((char*) &sort_param,sizeof(sort_param));
sort_param.max_rows= elements;
sort_param.sort_form=table;
sort_param.rec_length= sort_param.sort_length= sort_param.ref_length=
size;
sort_param.keys= (uint) (max_in_memory_size / sort_param.sort_length);
sort_param.not_killable=1;
if (!(sort_buffer=(uchar*) my_malloc((sort_param.keys+1) *
sort_param.sort_length,
MYF(0))))
return 1;
sort_param.unique_buff= sort_buffer+(sort_param.keys*
sort_param.sort_length);
sort_param.compare= (qsort2_cmp) buffpek_compare;
sort_param.cmp_context.key_compare= tree.compare;
sort_param.cmp_context.key_compare_arg= tree.custom_arg;
/* Merge the buffers to one file, removing duplicates */
if (merge_many_buff(&sort_param,sort_buffer,file_ptr,&maxbuffer,&file))
goto err;
if (flush_io_cache(&file) ||
reinit_io_cache(&file,READ_CACHE,0L,0,0))
goto err;
if (merge_buffers(&sort_param, &file, outfile, sort_buffer, file_ptr,
file_ptr, file_ptr+maxbuffer,0))
goto err;
error=0;
err:
my_free(sort_buffer);
if (flush_io_cache(outfile))
error=1;
/* Setup io_cache for reading */
save_pos=outfile->pos_in_file;
if (reinit_io_cache(outfile,READ_CACHE,0L,0,0))
error=1;
outfile->end_of_file=save_pos;
return error;
}
|