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[build-system]
requires = ["setuptools>=61.0", "wheel"]
build-backend = "setuptools.build_meta"
[project]
name = "nabu"
authors = [
{name = "Pierre Paleo", email = "pierre.paleo@esrf.fr"},
{name = "Henri Payno", email = "henri.payno@esrf.fr"},
{name = "Alessandro Mirone", email = "mirone@esrf.fr"},
{name = "Jérôme Lesaint", email = "jerome.lesaint@esrf.fr"},
]
maintainers = [
{name = "Pierre Paleo", email = "pierre.paleo@esrf.fr"}
]
dynamic = ["version"]
description = "Nabu - Tomography software"
readme = "README.md"
requires-python = ">=3.10"
keywords = [
"tomography",
"reconstruction",
"X-ray imaging",
"synchrotron radiation",
"High Performance Computing",
"Parallel geometry",
"Conebeam geometry",
"Helical geometry",
"Ring artefact correction",
"Geometric calibration",
]
license = "MIT"
license-files = ["LICENSE"]
classifiers = [
"Development Status :: 5 - Production/Stable",
"Intended Audience :: Developers",
"Intended Audience :: Science/Research",
"Programming Language :: Python :: 3",
"Programming Language :: Python :: 3.10",
"Programming Language :: Python :: 3.11",
"Programming Language :: Python :: 3.12",
"Programming Language :: Python :: 3.13",
"Environment :: Console",
"Operating System :: Unix",
"Operating System :: MacOS :: MacOS X",
"Operating System :: POSIX",
"Topic :: Scientific/Engineering :: Physics",
"Topic :: Scientific/Engineering :: Medical Science Apps.",
]
dependencies = [
"numpy > 1.9.0",
"scipy",
"h5py>=3.0",
"silx >= 0.15.0",
"tomoscan >= 2.3.0",
"psutil",
"pytest",
"tifffile",
"tqdm",
"scikit-image",
"PyWavelets",
"glymur",
"pyvkfft",
]
#packages = find
[project.urls]
Homepage = "https://gitlab.esrf.fr/tomotools/nabu"
Documentation = "http://www.silx.org/pub/nabu/doc"
Repository = "https://gitlab.esrf.fr/tomotools/nabu/-/releases"
Changelog = "https://gitlab.esrf.fr/tomotools/nabu/-/blob/master/CHANGELOG.md"
[project.optional-dependencies]
full = [
"pycuda!=2024.1.1",
"pycudwt",
"sluurp >=0.3",
]
full_nocuda = [
"scikit-image",
"PyWavelets",
"glymur",
"sluurp >=0.3",
"pyvkfft",
]
doc = [
"mkdocs",
"mkdocs-material",
"mkdocs-material-extensions",
"mkdocs-gen-files",
"mkdocs-markdownextradata-plugin",
"mkdocs-pagetree-plugin",
"mkapi",
"mkdocs-jupyter",
"nbconvert",
"markdown-exec",
]
[project.scripts]
nabu = "nabu.app.reconstruct:main"
nabu-config = "nabu.app.bootstrap:bootstrap"
nabu-test = "nabu.tests:nabu_test"
nabu-histogram = "nabu.app.histogram:histogram_cli"
nabu-rotate = "nabu.app.rotate:rotate_cli"
nabu-double-flatfield = "nabu.app.double_flatfield:dff_cli"
nabu-validator = "nabu.app.validator:main"
nabu-helical = "nabu.app.reconstruct_helical:main_helical"
nabu-helical-prepare-weights-double = "nabu.app.prepare_weights_double:main"
nabu-stitching-config = "nabu.app.bootstrap_stitching:bootstrap_stitching"
nabu-stitching = "nabu.app.stitching:main"
nabu-cast = "nabu.app.cast_volume:main"
nabu-compare-volumes = "nabu.app.compare_volumes:compare_volumes_cli"
nabu-shrink-dataset = "nabu.app.shrink_dataset:shrink_cli"
nabu-composite-cor = "nabu.app.composite_cor:main"
nabu-poly2map = "nabu.app.create_distortion_map_from_poly:create_distortion_maps_entry_point"
nabu-diag2pix = "nabu.app.diag_to_pix:main"
nabu-diag2rot = "nabu.app.diag_to_rot:main"
nabu-multicor = "nabu.app.multicor:main"
nabu-reduce-dark-flat = "nabu.app.reduce_dark_flat:main"
nabu-display-timings = "nabu.app.parse_reconstruction_log:parse_reclog_cli"
nabu-pcaflats = "nabu.app.pcaflats:main"
nabu-estimate-motion = "nabu.app.estimate_motion:estimate_motion"
nabu-zflip = "nabu.app.flip_volume_vertically:flip_volume_vertically_app"
[tool.setuptools.dynamic]
version = {attr = "nabu.version"}
#readme = {file = ["README.md"]}
[tool.setuptools.packages.find]
where = ["."] # list of folders that contain the packages (["."] by default)
include = ["nabu*"] # package names should match these glob patterns (["*"] by default)
exclude = ["sandbox","build*"] # exclude packages matching these glob patterns (empty by default)
# namespaces = false # to disable scanning PEP 420 namespaces (true by default)
[tool.setuptools.package-data]
"nabu.cuda" = ["src/*.cu", "src/*.h"]
"nabu.opencl" = ["src/*.cl", "src/*.h"]
"nabu.resources" = ["templates/*.conf"]
[tool.bandit]
exclude_dirs = []
tests = []
skips = [
"B101", # TODO - to be handled properly
"B105", # B105:hardcoded_password_string - already accounted by ruff
"B110", # Try, Except, Pass detected. - already accounted by ruff
]
[tool.black]
line-length = 120
target-version = ["py312"]
extend-exclude = "nabu/thirdparty/"
|
