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Source: nanofilt
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders: Shayan Doust <hello@shayandoust.me>
Section: science
Priority: optional
Build-Depends: debhelper-compat (= 13),
python3-all,
python3-setuptools,
dh-python,
python3-biopython,
python3-pandas,
python3-flake8
Standards-Version: 4.5.0
Vcs-Browser: https://salsa.debian.org/med-team/nanofilt
Vcs-Git: https://salsa.debian.org/med-team/nanofilt.git
Homepage: https://github.com/wdecoster/nanofilt
Rules-Requires-Root: no
Package: nanofilt
Architecture: all
Depends: ${python3:Depends},
${misc:Depends},
python3-biopython,
python3-pandas
Description: filtering and trimming of long read sequencing data
Filtering and trimming of long read sequencing data. Filtering on
quality and/or read length, and optional trimming after passing filters.
Reads from stdin, writes to stdout. Optionally reads directly from an
uncompressed file specified on the command line.
.
Intended to be used:
.
1. directly after fastq extraction.
2. prior to mapping.
3. in a stream between extraction and mapping.
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