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Source: nanopolish
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders: Andreas Tille <tille@debian.org>
Section: science
Priority: optional
Build-Depends: debhelper-compat (= 12),
dh-python,
python3,
zlib1g-dev,
libfast5-dev (>= 0.6.5),
libhts-dev,
libeigen3-dev,
libminimap2-dev
Standards-Version: 4.5.0
Vcs-Browser: https://salsa.debian.org/med-team/nanopolish
Vcs-Git: https://salsa.debian.org/med-team/nanopolish.git
Homepage: https://github.com/jts/nanopolish
Rules-Requires-Root: no
Package: nanopolish
Architecture: any
Depends: ${shlibs:Depends},
${misc:Depends},
${python3:Depends},
${perl:Depends}
Recommends: python3-biopython,
python3-pysam
Suggests: perl,
make
Description: consensus caller for nanopore sequencing data
Nanopolish uses a signal-level hidden Markov model for consensus calling
of nanopore genome sequencing data. It can perform signal-level analysis
of Oxford Nanopore sequencing data. Nanopolish can calculate an improved
consensus sequence for a draft genome assembly, detect base
modifications, call SNPs and indels with respect to a reference genome
and more.
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