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#!/usr/bin/make -f
#DH_VERBOSE = 1
include /usr/share/dpkg/default.mk
export DEB_CPPFLAGS_MAINT_APPEND= \
-I/usr/include/hdf5/serial \
-I/usr/include/eigen3 \
-I/usr/include/minimap2
# dpkg-buildpackage would otherwise set -O2, overriding upstream's -O3
# Note: ask Steffen why he chose to add -flto for this package.
# Steffen replies: anything with many object files and compute-intensive should benefit from it
export DEB_CFLAGS_MAINT_APPEND = -O3 -flto
export DEB_CXXFLAGS_MAINT_APPEND = -O3 -flto
export DEB_LDFLAGS_MAINT_APPEND = -L/usr/lib/$(DEB_HOST_MULTIARCH)/hdf5/serial
export DEB_BUILD_MAINT_OPTIONS = hardening=+all
# These variables just need to be defined as anything but "install" in order
# to use system versions.
export HDF5=external
export EIGEN=external
export HTS=external
export MINIMAP2=external
export SLOW5LIB=external
%:
dh $@ --with python3
override_dh_auto_clean:
sed -i~ 's/^.depend: .*/.depend:/' Makefile
touch .depend
$(MAKE) clean
$(RM) .depend
mv Makefile~ Makefile
override_dh_auto_build:
dh_auto_build
$(MAKE) nanopolish_test
### When overriding auto_test make sure DEB_BUILD_OPTIONS will be respected
override_dh_auto_test:
ifeq (,$(filter nocheck,$(DEB_BUILD_OPTIONS)))
echo "Since we need the executable created inside build time test in autopkgtest this is enforced in dh_auto_build to circumvent nocheck."
endif
override_dh_install:
dh_install
for pl in `find debian -name "*.pl"` ; do \
sed -i '1s?^#!/usr/bin/env.*perl?#!/usr/bin/perl?' $${pl} ; \
done
for pl in `grep -Rl '#![[:space:]]*/usr/bin/env *python' debian/*/usr/*` ; do \
sed -i '1s?^#!.*python.*?#!/usr/bin/python3?' $${pl} ; \
done
override_dh_fixperms:
dh_fixperms
find debian -name *.fast5 -exec chmod -x \{\} \;
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