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#######################################################################
#
# default flags for compiling and loading
#
# $Log: make.mmdbsrv,v $
# Revision 6.23 1998/11/06 18:59:07 kimelman
# PubStruct loading transaction granularity changed
#
# Revision 6.22 1998/10/22 17:04:45 kimelman
# tash cleaned
# path to default production dirs added
#
# Revision 6.21 1998/10/07 21:54:10 kimelman
# local ctutils dependencies thrown away - linking global ctlibutil now
#
# Revision 6.20 1998/10/05 17:49:10 kimelman
# optimazation flags fixed
#
# Revision 6.19 1998/09/30 15:40:42 kimelman
# no @s
#
# Revision 6.18 1998/09/30 15:34:08 kimelman
# optflags fixed
#
# Revision 6.17 1998/08/08 04:48:47 kimelman
# switch to public ctutils library
#
# Revision 6.16 1998/08/05 17:51:03 kimelman
# --enforce mode & /tmp downpath
#
# Revision 6.15 1998/07/16 20:08:51 kimelman
# loader ==> st_loader
#
# Revision 6.14 1998/07/14 20:24:53 kimelman
# FT schema & smart load
#
# Revision 6.13 1998/06/19 17:49:09 kimelman
# added NCBI_OTHERLIBS to resolve socket dependencies
#
# Revision 6.12 1998/06/09 18:50:33 kimelman
# permissions problems workaround added to wrapper
#
# Revision 6.11 1998/06/09 18:39:07 kimelman
# 1. web installation fixed: we can work now with 1-2-3 simultaneos binaries.
# 2. added standalone compilation target - makes a system without DB part.
# 3. MMDBlibs extracted and presented as mactro.
#
# Revision 6.10 1998/05/27 17:57:32 kimelman
# put compressing stuff into production
#
# Revision 6.9 1998/05/15 20:20:00 kimelman
# compr -> nlmzip
#
# Revision 6.8 1998/05/14 16:52:26 kimelman
# ./bin ==> bin
#
# Revision 6.7 1998/05/14 16:49:18 kimelman
# added error report generation for install_local targer directory,
# added 'clean' entry
# removed obsolete dependence on compression.c
#
# Revision 6.6 1998/05/14 16:11:18 kimelman
# Compression stuff added in debug mode.
# few bugs fixed, related to OpenServer/SQL Server switching
#
# Revision 6.5 1998/05/08 18:12:39 kimelman
# minibugs & style
#
# Revision 6.4 1998/05/08 03:06:12 kimelman
# added options dependencies checking.
# tuned multiplatform compilation
# installation options added
#
# Revision 6.3 1998/04/15 14:54:00 kimelman
# 1. Make retrieval uniform from open server and sql server.
# 2. mmdbsrv retrival performance tuning:
# - size of read-in buffers
# - direct pdb2mmdb DB lookup instead of full loading pdb to mmdb translataion
# table
# 3. cleaning mmdblocl.* and make.mmdbsrv in order to remove obsolete code
#
# Revision 6.2 1998/04/03 21:38:07 kimelman
# PubStruct libraries and other stuff...
#
# Revision 6.1 1997/11/05 19:53:04 madej
# Remove obsolete library ncbiwww2.
#
#######################################################################
# SGI options
NCBI_SYBLIBS_CT = -L$(NCBI_SYBASE)/lib -lblk -lct -lcs -ltcl -lcomn -lintl
include $(NCBI)/ncbi.mk
SHELL=$(NCBI_MAKE_SHELL)
CC = $(NCBI_CC)
CFLAGS1 = -c
LDFLAGS1 =
OPTFLAG=$(NCBI_OPTFLAG)
INCPATH = $(NCBI_INCDIR)
LIBPATH = $(NCBI_LIBDIR)
SYBLIBRARY = $(NCBI_SYBLIBS_CT)
#SYBLIBRARY = $(NCBI_SYBLIBS_CT_r)
webdir=/net/neptune/pubmed/WWW/live/www.server/cgi-bin/Entrez/Structure
utildir=/net/vaster/usr/people2/bryant/MDB/Pubstruct
DEF =
# SYMBOLS FOR source, executables.
SRC_nodb= mmdbsrv.c mmdblocl.c
SRC= $(SRC_nodb) PubStructAsn.c
OBJ = $(SRC:.c=.o)
OBJ_nodb = $(SRC_nodb:.c=.o)
EXE = mmdbsrv
CFLAGS = -I. $(CFLAGS1) $(OPTFLAG) -I$(INCPATH) $(VIBFLAG) $(DEF) $(NCBI_SYBFLAGS) $(NCBI_SYBFLAG)
LDFLAGS = $(OPTFLAG) $(LDFLAGS1) -L$(LIBPATH) $(VIBFLAG) $(DEF)
MTLDFLAGS = $(NCBI_THR_ALTOBJ) $(SYBLIBRARY) -L$(NCBI_ALTLIB) -lncbiobj -lncbi -lnsl -lthread -ldl -lm
MMDBLIBS= -lncbimmdb -lncbiNacc -lnetentr -lnetcli -lncbicdr -lncbiobj -lncbi $(NCBI_OTHERLIBS) -L$(NCBI_ALTLIB)
LOADLIBS= -lncbimmdb -lncbiobj -lncbi $(NCBI_OTHERLIBS) -L$(NCBI_ALTLIB)
## Implicit actions
##
## if need a .o, compile the .c
##
.c.o :
$(CC) $(CFLAGS) $<
## Default thing to make will be "all"
##
all: compile
install: install_util install_web
# installlation of bin utilities
install_util: st_loader loader_check.sh index/st_configure.sh PubStruct_control.sh PubStruct.scr PubStruct_proc.scr
@[ -d $(utildir) ] || ( \
if [ x$(utildir) = xbin ] ; \
then mkdir bin ; \
else \
echo "Error: util tool installation failed - target directory \"$(utildir)\" doesn't exist"; exit 1 ; \
fi )
cp st_loader $(utildir)
cp index/st_configure.sh $(utildir)
cp PubStruct_control.sh PubStruct.scr loader_check.sh PubStruct_proc.scr $(utildir)
chmod a+x $(utildir)/st_configure.sh $(utildir)/PubStruct_control.sh
[ ! -f $(utildir)/.syb_set ] || ( cd $(utildir) ; rm -rf .syb_set )
SYBASE=$(NCBI_SYBASE) ; export SYBASE ; cd $(utildir) ; ./st_configure.sh
# installation of mmdbsrv and playaround stuff
install_web: $(webdir) mmdbsrv mmdbsrv.wrapper index/st_configure.sh
cp mmdbsrv $(webdir)/mmdbsrv.REAL
cp index/st_configure.sh $(webdir)
cp mmdbsrv.wrapper $(webdir)
chmod a+x $(webdir)/st_configure.sh $(webdir)/mmdbsrv.wrapper
cd $(webdir) ; [ -r mmdbsrv ] || ln -s mmdbsrv.wrapper mmdbsrv ;
[ ! -d $(webdir)/new ] || ( cd $(webdir)/new ; [ ! -f mmdbsrv.db ] || rm mmdbsrv.db )
[ ! -d $(webdir)/new ] || ( cd $(webdir)/new ; ln -s ../mmdbsrv.REAL mmdbsrv.db; )
[ ! -f $(webdir)/.syb_set ] || ( cd $(webdir) ; rm -rf .syb_set )
SYBASE=$(NCBI_SYBASE) ; export SYBASE ; cd $(webdir) ; ./st_configure.sh
compile : prolog $(EXE) st_loader
prolog : checks .recompile
update:
[ -d index ] || cvs checkout -d index internal/pubmed/pmentrez/scripts/indexing
cvs update
checks : .options
@echo "$(CFLAGS)" >..options
# diff ..options .options >/dev/null || cp ..options .options
@diff ..options .options >/dev/null || ( echo updating '.options' ; cp ..options .options ; rm .recompile )
@rm -f ..options
.recompile: .options make.mmdbsrv
@echo updating '.recompile'
@-rm -f *.o
@date >$@
.options:
@echo making '.options'
@echo "$(CFLAGS)" >.options
mmdblocl.o : mmdblocl.c PubStructAsn.h
PubStructAsn.o : PubStructAsn.c PubStructAsn.h
loader.o : loader.c PubStructAsn.h
## make individual applications and components
##
$(EXE) : mmdbsrv.$(DEF1)
rm -f $@
ln $? $@
st_loader : loader.$(DEF1)
rm -f $@
ln $? $@
#
# Production mode (default)
#
mmdbsrv. : $(OBJ)
$(CC) -o $@ -DX11 $(LDFLAGS) $(OBJ) -lnlmzip -lctutils $(SYBLIBRARY) $(MMDBLIBS)
loader. : loader.o PubStructAsn.o
$(CC) -o $@ $(LDFLAGS) loader.o PubStructAsn.o -lnlmzip -lctutils $(SYBLIBRARY) $(LOADLIBS)
#
# NO DB mode
#
standalone:
$(MAKE) -f make.mmdbsrv PURIFY=$(PURIFY) DEF="-D__NO_DB__" DEF1=nodb
mmdbsrv.nodb : $(OBJ_nodb)
$(CC) -o $@ -DX11 $(LDFLAGS) $(OBJ_nodb) $(MMDBLIBS)
loader.nodb :
# just to make 'MAKE' happy :)
echo "#! /bin/sh " >$@
echo "# ">>$@
echo "# `date` ">>$@
echo "# ">>$@
echo "echo \\$$0 - there is no DB to load anything - it is a standalone version!">>$@
chmod a+x $@
#
# DEBUG mode
#
MAKEDEBUG=$(MAKE) -f make.mmdbsrv PURIFY=$(PURIFY) DEF="-DDEBUG_MODE" DEF1=test OPTFLAG="-g" \
CFLAGS1="-c -Iinclude" LDFLAGS1=-Llib webdir=../qa utildir=bin
debugc:
$(MAKEDEBUG) compile
debug_web :
$(MAKEDEBUG) compile install test_web
debug_bin :
$(MAKEDEBUG) compile install test_util
debug :
$(MAKEDEBUG) compile install test_util test_web
test_web :
cd $(webdir) ; [ -f mmdb.tester -a -f httpd_settings ] && ( echo "1" | ./mmdb.tester )
test_util: install_util
@echo "1" >.testset
$(utildir)/PubStruct_control.sh --DBserver MOZART_SYS10 --load_list .testset --download_list .testset --downpath ./mmdb --enforce --verbose
@ls -l mmdb
@rm -rf mmdb .testset
mmdbsrv.test : $(OBJ)
$(PURIFY) $(CC) -o $@ -g -DX11 $(LDFLAGS) $(OBJ) -lnlmzip -lctutils $(SYBLIBRARY) $(MMDBLIBS)
loader.test : loader.o PubStructAsn.o
$(PURIFY) $(CC) -g -o $@ $(LDFLAGS) loader.o PubStructAsn.o -lnlmzip -lctutils $(SYBLIBRARY) $(LOADLIBS)
#
# service entries
#
enforce:
clean:
for fn in st_loader loader loader. loader.test ; do [ ! -f $$fn ] || rm -f $$fn ; done
for fn in mmdbsrv mmdbsrv. mmdbsrv.test mmdbsrv.nodb ; do [ ! -f $$fn ] || rm -f $$fn ; done
- rm -f *.o *~ *% \#* *.a
purify :
$(MAKE) -f make.mmdbsrv PURIFY=purify $(target)
|
