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########################################################################
#
# >>>>> IMPORTANT NOTE <<<<<
#
# To make vastsrv on vaster (SGI) use:
#
# make -f make.vastsrv MULDEFS=
#
# This will override the definition of MULDEFS, which is needed on
# dorothy (Sun).
#
########################################################################
# Generic command-line makefile for NCBI applications
#
# This assumes the following variables are set in a file called "ncbi.mk"
# which is included by this one. In this case it resides in a directory
# set by the environment variable "NCBI"
#
# NCBI_CC = default compiler to use
# NCBI_CFLAGS1 = default compiler switches (not optimization)
# NCBI_LDFLAGS1 = default compiler switches when linking (not optimization)
# NCBI_OPTFLAG = default optimization (-O)
# NCBI_INCDIR = default toolkit include paths
# NCBI_LIBDIR = default toolkit library paths
# NCBI_ALTLIB = debugging toolkit library paths
# NCBI_VIBFLAG = additional include paths/defines for Vibrant apps
# NCBI_VIBLIBS = additional libraries needed to link Vibrant apps
# NCBI_OTHERLIBS = additional libraries needed to link the system
#
# This enables platform independent makefiles for ncbi toolkit apps. You
# can change any default behavior by setting the variable on the command
# line.
#
# Use gcc complier. "make NCBI_CC=gcc" or "make CC=gcc"
# Change optimization to debug
# "make NCBI_OPTFLAG="-g" NCBI_LIBPATH=$NCBI_ALTLIB"
# or
# "make OPTFLAG="-g" LIBPATH=$NCBI_ALTLIB"
#
# You can also change the behavior permanently in the makefile by changing
# the assignment of the internal variable to the one from the include
# file:
#
# Use gcc compiler.
# Change CC=$(NCBI_CC)
# To CC=gcc
# in the makefile itself
#
# Make debugging version
# OPTFLAG=-g
# LIBPATH=$(NCBI_ALTDIR)
#
# You need to specify the EXE and SRC symbols
#
#######################################################################
#
# default flags for compiling and loading
#
# $Log: make.vastsrv,v $
# Revision 6.7 1998/10/14 17:23:29 addess
# includes prunebiostruc
#
# Revision 6.5 1998/06/11 19:14:28 madej
# Allow compile of vastsrv on both SGI and Sun.
#
# Revision 6.4 1998/03/30 19:09:32 madej
# Added subset routines vastsubs.c
#
# Revision 6.3 1998/03/16 18:00:04 lewisg
# added temporary hooks to communicate to cn3d
#
# Revision 6.2 1998/03/10 16:27:26 madej
# Remove a local reference.
#
# Revision 6.1 1998/03/10 16:22:54 madej
# First official version of make.vastsrv.
#
#
#######################################################################
include $(NCBI)/ncbi.mk
# temporary fix for botched include file location
#NCBI_INCDIR = /usr/ncbi/ncbi/include
CC = $(NCBI_CC)
CFLAGS1 = $(NCBI_CFLAGS1)
LDFLAGS1 = $(NCBI_LDFLAGS1)
OPTFLAG = -g
OTHERLIBS = $(NCBI_OTHERLIBS)
VIBLIBS= $(NCBI_VIBLIBS)
VIBFLAG= $(NCBI_VIBFLAG)
INCPATH = $(NCBI_INCDIR)
LIBPATH = $(NCBI_LIBDIR)
DEF =
#SRC = vastsrv.c vastlocl.c vast2mage.c vast2pdb.c vast2cn3d.c vastsubs.c \
# vastchkid.c # vast2salsa.c
SRC = vastsrv.c vastlocl.c vast2mage.c vast2pdb.c vast2cn3d.c vastsubs.c \
vastchkid.c mkbioseq_vs.c mkbioseqA.c mkbioseqB.c bsannotvs.c \
prunebiostruc.c # mmdbapi.c mmdbapi1.c mmdbapi2.c mmdbapi3.c \
# mmdbapi4.c # vast2salsa.c
EXE = vastsrv
#
# Note: On dorothy (Sun) it is necessary to specify that multiple definitions are
# allowed (MMDBBiostrucGet). This is done via "-z muldefs".
#
CFLAGS = $(CFLAGS1) $(OPTFLAG) -I$(INCPATH) $(VIBFLAG) $(DEF)
MULDEFS = -z muldefs
LDFLAGS = -I$(INCPATH) $(OPTFLAG) -L$(LIBPATH) $(VIBFLAG) $(DEF) $(MULDEFS)
# all NCBI libraries aliased for easy access here
LIB1 = -lncbi
LIB2 = -lncbiobj
LIB3 = -lncbicdr
LIB4 = -lvibrant
LIB5 = -lncbiacc
LIB6 = -lnetcli
LIB7 = -lnetentr
LIB8 = -lncbiNacc
LIB9 = -lncbiCacc
# LIB10 is reserved for NCSA socket library
LIB10 =
LIB11 = -lncbimla
LIB12 = -lncbitax
LIB13 = -lncbiid0
#LIB14 = -lncbibls0
LIB15 = -lnetcliE
LIB16 = -lnetcliS
LIB17 = -lnetcliES
LIB18 = -lncbibls1
LIB19 = -lncbispel
# LIB20 is for the NCBI desktop utilities
LIB20 = -lncbidesk
LIB21 = -lncbibls2
LIB22 = -lncbimmdb
LIB24 = -lncbisugg
LIB28 = -lncbimsc1
LIB29 = -lncbiwww
## To clean out the directory without removing make
##
## Implicit actions
##
## if need a .o, compile the .c
##
.c.o :
$(CC) $(CFLAGS) $<
#####################################################################
##
## Here is where you set up your own things to make
##
#####################################################################
## Default thing to make will be "all"
##
all : $(EXE)
## make individual applications and components
##$
$(EXE) : $(SRC)
$(CC) -o $(EXE) -DX11 -I./ -I/~/ncbi/build $(LDFLAGS) $(SRC) \
$(LIB29) $(LIB22) $(LIB8) $(LIB7) $(LIB6) $(LIB3) $(LIB2) $(LIB1) \
$(LIB28) $(OTHERLIBS)
|
