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/* $Id: mmdb_pubstruct.c,v 6.4 2001/05/25 01:42:10 kimelman Exp $
* ===========================================================================
*
* PUBLIC DOMAIN NOTICE
* National Center for Biotechnology Information (NCBI)
*
* This software/database is a "United States Government Work" under the
* terms of the United States Copyright Act. It was written as part of
* the author's official duties as a United States Government employee and
* thus cannot be copyrighted. This software/database is freely available
* to the public for use. The National Library of Medicine and the U.S.
* Government do not place any restriction on its use or reproduction.
* We would, however, appreciate having the NCBI and the author cited in
* any work or product based on this material
*
* Although all reasonable efforts have been taken to ensure the accuracy
* and reliability of the software and data, the NLM and the U.S.
* Government do not and cannot warrant the performance or results that
* may be obtained by using this software or data. The NLM and the U.S.
* Government disclaim all warranties, express or implied, including
* warranties of performance, merchantability or fitness for any particular
* purpose.
*
* ===========================================================================
*
* File Name: $Id: mmdb_pubstruct.c,v 6.4 2001/05/25 01:42:10 kimelman Exp $
*
* File Description: Defines MMDB access using sybase retrival.
*
* Modifications:
* --------------------------------------------------------------------------
* Date Name Description of modification
* ------- ---------- -----------------------------------------------------
*
* $Log: mmdb_pubstruct.c,v $
* Revision 6.4 2001/05/25 01:42:10 kimelman
* mmdb2livemmdb
*
* Revision 6.3 1999/12/01 23:27:26 kimelman
* added guards to avoid repeatable connect/disconnect
*
* Revision 6.2 1999/08/02 19:50:51 kimelman
* keep connection alive foor mmdbsrv & vastsrv sessions
*
* Revision 6.1 1999/05/17 21:29:20 kimelman
* extracted version of pubstruct specific implementations of MMDBBiostrucGET & Co..
*
*
* ==========================================================================
*/
/*********************************************************************************/
/* This file abstracts the calls to Network Entrez that were previously */
/* embedded in mmdbapi1.c Linking with this file forces sysbase retrival */
/******** NOTE - .mmdbrc (UNIX) mmdb.ini (Win) mmdb.cnf (Mac) required *******/
/* containing paths to database and index file name: ******
*
* [MMDB]
* PubStruct = PUBSEQ_OS:PubStruct=anyone:allowed
*
*/
#include <ncbi.h>
#include <mmdbapi1.h>
#include <mmdbdata.h>
#include <mmdblocl.h>
#include <accentr.h>
#include <accutils.h>
#include "PubStructAsn.h"
#include <assert.h>
static int pubstruct_init=0;
static Char pubstruct[PATH_MAX];
static ps_handle_t db = NULL;
/**************************************************************
* PUBLIC INTERFACE
**************************************************************/
Boolean LIBCALL
MMDB2liveMMDB(DocUid *mmdb,Int4Ptr live,CharPtr pdb)
{
Boolean b;
if (!db && pubstruct[0]==0) {
strcpy(pubstruct,"BACH:PubStruct=anyone,allowed");
}
MMDBInit();
b = PubStruct_mmdb2livemmdb(db,*mmdb,mmdb,live,pdb);
MMDBFini();
return b;
}
DocUid LIBCALL
MMDBEvalPDB (CharPtr str)
{
Char eval[10];
DocUid id=0;
StringNCpy(eval, str, 4);
eval[4] = '\0';
StrUpper(eval);
{ /* let's be paranoid */
int i,is_mmdb=1;
for(i=0;i<4;i++)if(eval[i]>='A') { is_mmdb=0; break; }
if(is_mmdb)
id=atol(eval);
}
MMDBInit();
id = PubStruct_pdb2mmdb1(db, eval);
MMDBFini();
return id;
}
BiostrucPtr LIBCALL
MMDBBiostrucGet (DocUid uid, Int4 mdlLvl, Int4 maxModels)
{
extern WWWInfoPtr info; /* mmdbsrv:info */
AsnIoPtr aip = NULL;
BiostrucPtr pbs = NULL;
int index;
char *item;
Int4 sat_key = 0;
Int4 state = 0;
/* char *dbserver = (pubstruct[0]?pubstruct:NULL); */
MMDBInit();
/*
* THE following block should be defined ONLY for server which show up internal blob revisions in DB
*/
#ifdef INTERNAL_SERVER
/* printf("MMDBBiostrucGet_pubstruct(%s,%d)\n",dbserver,uid); */
if(WWWFindName(info, "sat_key") >=0)
{
index = WWWFindName(info, "sat_key");
item = WWWGetValueByIndex(info,index);
sat_key=atol(item);
if (sat_key<=0) {
ErrPostEx(SEV_ERROR,0,0, "cant convert Pubstruct..Struct.acc (sat_key) <%s> into integer",item);
return NULL;
}
}
if (WWWFindName(info, "state"))
{
index = WWWFindName(info, "state");
item = WWWGetValueByIndex(info,index);
state=-1;
state=atol(item);
if (state<0) {
ErrPostEx(SEV_ERROR,0,0, "cant convert Pubstruct..Struct.state<%s> into integer",item);
return NULL;
}
}
#endif
if(state>0 && sat_key==0) {
sat_key = PubStruct_lookup1(db,uid, state);
}
if(sat_key>0)
aip = PubStruct_readasn1(db, sat_key);
else if (state==0)
aip = PubStruct_viewasn1(db, uid);
if(aip)
{
pbs = BiostrucAsnGet(aip, NULL, mdlLvl, maxModels);
PubStruct_closeasn (aip,1);
}
MMDBFini();
return pbs;
}
Boolean LIBCALL
MMDBInit (void)
{
pubstruct_init++;
if(db)
return TRUE;
if(pubstruct_init==1)
{
GetAppParam("mmdb", "MMDB", "PubStruct", "", pubstruct, sizeof(pubstruct));
if (pubstruct[0]==0) {
strcpy(pubstruct,"PUBSEQ_OS:PubStruct=anyone,allowed");
}
}
db = PubStruct_connect(pubstruct);
if(!db)
{
ErrPostEx(SEV_ERROR,0,0, "cant connect to Pubstruct (%s)",pubstruct);
return FALSE;
}
return TRUE;
}
void LIBCALL
MMDBFini (void)
{
pubstruct_init--;
if(pubstruct_init>0)
return;
if(db)
{
PubStruct_disconnect(db);
db = NULL;
}
return;
}
CharPtr LIBCALL
MMDB_configuration(void)
{
return "Version:\t$Id: mmdb_pubstruct.c,v 6.4 2001/05/25 01:42:10 kimelman Exp $\nConfiguration: PubStruct" ;
}
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