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|
#include <objseq.h>
#include <seqport.h>
#include <gather.h>
#include <picture.h>
#include <viewer.h>
#include <seqgrphx.h>
#include <seqgraph.h>
#include <seqfltr.h>
#include <seqmtrx.h>
#include <seqpcc.h>
#include <aacomp.h>
#include <seqanal.h>
/* functions - internal */
static Boolean UnHLSeg (SegmenT seg, PrimitivE prim, Uint2 segID,
Uint2 primID, Uint2 primCt, Pointer data)
{
VieweR v;
v = (VieweR) data;
HighlightPrimitive (v, seg, prim, PLAIN_PRIMITIVE);
return TRUE;
}
/* functions - message */
static Int2 LIBCALLBACK MatrixMsgFunc (OMMsgStructPtr ommsp)
{
OMUserDataPtr omudp;
GraphViewFormPtr gvp;
SeqGraphPtr sgp;
VieweR v;
PoinT pt;
PntInfo pw;
Uint2 segID, primID, primCt;
SegmenT s;
PrimitivE p;
Int4 pos;
FloatHi maxVal;
if ((omudp = (OMUserDataPtr) (ommsp->omuserdata)) == NULL)
return OM_MSG_RET_ERROR;
if ((gvp = (GraphViewFormPtr) (omudp->userdata.ptrvalue)) == NULL)
return OM_MSG_RET_ERROR;
switch (ommsp->message)
{
case OM_MSG_SELECT:
if (ommsp->itemtype == OBJ_BIOSEQ)
{
if (ommsp->regiontype == OM_REGION_SEQLOC)
{
if ((sgp = gvp->sgp) == NULL)
return OM_MSG_RET_ERROR;
switch (sgp->flags[2])
{
default:
case 1:
maxVal = sgp->max.realvalue;
break;
case 2:
case 3:
maxVal = (FloatHi) sgp->max.intvalue;
break;
}
if (gvp->slp != NULL)
{
v = gvp->viewer;
pt.x = 0;
pt.y = 0;
s = FindSegment (v, pt, &segID, &primID, &primCt);
ExploreSegment (s, v, UnHLSeg);
/*
ObjMgrDeSelectAll ();
gvp->slp = NULL;
*/
}
pos = SeqLocStart ((SeqLocPtr) ommsp->region);
pos += SeqLocStop ((SeqLocPtr) ommsp->region);
pos /= 2;
pos /= gvp->zoom;
pw.x = (Int2) pos;
if (SeqLocStrand ((SeqLocPtr) ommsp->region) == Seq_strand_plus)
{
pw.y = (Int2) (gvp->margin + ((Int4) (1.0 +
(maxVal/2)) * sgp->a) +
(Int4) sgp->b);
}
else
{
pw.y = (Int2) (gvp->margin + ((Int4) (maxVal - 1.0 -
(maxVal/2)) * sgp->a) +
(Int4) sgp->b);
}
v = gvp->viewer;
primID = 0;
MapWorldToViewer (v, pw, &pt);
s = FindSegment (v, pt, &segID, &primID, &primCt);
if (primID < 1 || s == NULL)
return OM_MSG_RET_ERROR;
p = GetPrimitive (s, primCt);
WatchCursor ();
ExploreSegment (s, v, UnHLSeg);
ArrowCursor ();
HighlightPrimitive (v, s, p, FRAME_PRIMITIVE);
/* DUP/memcp and delta id
gvp->slp = (Pointer) (ommsp->region);
*/
/*
ObjMgrSelect (gvp->entityID, gvp->itemID, OBJ_BIOSEQ, OM_REGION_SEQLOC,
gvp->slp);
*/
}
}
break;
case OM_MSG_DESELECT:
if (ommsp->itemtype == OBJ_BIOSEQ)
{
if (ommsp->regiontype == OM_REGION_SEQLOC)
{
if (gvp->slp != NULL)
{
/*
v = gvp->viewer;
pt.x = 0;
pt.y = 0;
s = FindSegment (v, pt, &segID, &primID, &primCt);
ExploreSegment (s, v, UnHLSeg);
ObjMgrDeSelectAll ();
gvp->slp = NULL;
*/
}
}
}
break;
case OM_MSG_DEL:
case OM_MSG_CREATE:
case OM_MSG_UPDATE:
case OM_MSG_CACHED:
case OM_MSG_UNCACHED:
case OM_MSG_TO_CLIPBOARD:
break;
default:
break;
}
return OM_MSG_RET_OK;
}
static Int2 LIBCALLBACK FilterMsgFunc (OMMsgStructPtr ommsp)
{
OMUserDataPtr omudp;
GraphViewFormPtr gvp;
SeqGraphPtr sgp;
VieweR v;
PoinT pt;
PntInfo pw;
Uint2 segID, primID, primCt, start, end, i;
SegmenT s;
PrimitivE p;
FloatHi fval;
Int4 pos;
FloatHi maxVal, minVal;
if ((omudp = (OMUserDataPtr) (ommsp->omuserdata)) == NULL)
return OM_MSG_RET_ERROR;
if ((gvp = (GraphViewFormPtr) (omudp->userdata.ptrvalue)) == NULL)
return OM_MSG_RET_ERROR;
switch (ommsp->message)
{
case OM_MSG_SELECT:
if (ommsp->itemtype == OBJ_BIOSEQ)
{
if (ommsp->regiontype == OM_REGION_SEQLOC)
{
if ((sgp = gvp->sgp) == NULL)
return OM_MSG_RET_ERROR;
switch (sgp->flags[2])
{
default:
case 1:
maxVal = sgp->max.realvalue;
minVal = sgp->min.realvalue;
break;
case 2:
case 3:
maxVal = (FloatHi) sgp->max.intvalue;
minVal = (FloatHi) sgp->min.intvalue;
break;
}
if (gvp->slp != NULL)
{
v = gvp->viewer;
pt.x = 0;
pt.y = 0;
s = FindSegment (v, pt, &segID, &primID, &primCt);
ExploreSegment (s, v, UnHLSeg);
/*
ObjMgrDeSelectAll ();
gvp->slp = NULL;
*/
}
pos = SeqLocStart ((SeqLocPtr) ommsp->region);
pos /= gvp->zoom;
pw.x = (Int2) pos;
v = gvp->viewer;
primID = 0;
fval = minVal - 1;
while (primID < 1 && fval < maxVal)
{
fval++;
pw.y = (Int2) (gvp->margin + ((Int4) (fval * sgp->a)) +
(Int4) sgp->b);
MapWorldToViewer (v, pw, &pt);
s = FindSegment (v, pt, &segID, &primID, &primCt);
}
if (primCt == 0 && fval == maxVal)
return OM_MSG_RET_ERROR;
if (s == NULL)
return OM_MSG_RET_ERROR;
start = primCt;
pos = SeqLocStop ((SeqLocPtr) ommsp->region);
pos /= gvp->zoom;
pw.x = (Int2) pos;
primID = 0;
fval = minVal - 1;
while (primID < 1 && fval < maxVal)
{
fval++;
pw.y = (Int2) (gvp->margin + ((Int4) (fval * sgp->a)) +
(Int4) sgp->b);
MapWorldToViewer (v, pw, &pt);
s = FindSegment (v, pt, &segID, &primID, &primCt);
}
if (primCt == 0 || fval == maxVal)
return OM_MSG_RET_ERROR;
if (s == NULL)
return OM_MSG_RET_ERROR;
end = primCt;
if (start > end)
return OM_MSG_RET_ERROR;
WatchCursor ();
ExploreSegment (s, v, UnHLSeg);
ArrowCursor ();
for (i = start; i < end; i++)
{
p = GetPrimitive (s, i);
HighlightPrimitive (v, s, p, FRAME_PRIMITIVE);
}
/* DUP/memcp and delta id
gvp->slp = (Pointer) (ommsp->region);
*/
/*
ObjMgrSelect (gvp->entityID, gvp->itemID, OBJ_BIOSEQ, OM_REGION_SEQLOC,
gvp->slp);
*/
}
}
break;
case OM_MSG_DESELECT:
if (ommsp->itemtype == OBJ_BIOSEQ)
{
if (ommsp->regiontype == OM_REGION_SEQLOC)
{
if (gvp->slp != NULL)
{
/*
v = gvp->viewer;
pt.x = 0;
pt.y = 0;
s = FindSegment (v, pt, &segID, &primID, &primCt);
ExploreSegment (s, v, UnHLSeg);
ObjMgrDeSelectAll ();
gvp->slp = NULL;
*/
}
}
}
break;
case OM_MSG_DEL:
case OM_MSG_CREATE:
case OM_MSG_UPDATE:
case OM_MSG_CACHED:
case OM_MSG_UNCACHED:
case OM_MSG_TO_CLIPBOARD:
break;
default:
break;
}
return OM_MSG_RET_OK;
}
/* functions - cleanup */
static void CleanupGCFilterForm (GraphiC g, VoidPtr data)
{
GraphViewFormPtr gvp;
gvp = (GraphViewFormPtr) data;
if (gvp != NULL)
{
gvp = GraphViewFormFree (gvp, FALSE);
if (gvp->entityID > 0)
ObjMgrFreeUserData (gvp->entityID, gvp->procID, OMPROC_FILTER,
gvp->userKEY);
}
StdCleanupFormProc (g, data);
return;
}
/* functions - hooks */
Int2 LIBCALLBACK FilterCompGCFunc (Pointer data)
{
OMProcControlPtr ompcp;
BioseqPtr bsp;
GraphViewFormPtr gvp;
WindoW w;
OMUserDataPtr omudp;
SeqPortPtr spp;
ompcp = (OMProcControlPtr) data;
if (ompcp == NULL || ompcp->input_itemtype == 0)
return OM_MSG_RET_ERROR;
switch (ompcp->input_itemtype)
{
case OBJ_BIOSEQ:
bsp = (BioseqPtr) ompcp->input_data;
break;
default:
return OM_MSG_RET_ERROR;
}
if (bsp != NULL)
{
if (!ISA_na (bsp->mol))
return OM_MSG_RET_ERROR;
w = (WindoW) CreateGraphViewForm (-50, -33, "Filter Analysis",
bsp, GRAPH_FILTER);
}
else
{
return OM_MSG_RET_ERROR;
}
if ((gvp = (GraphViewFormPtr) GetObjectExtra (w)) == NULL)
{
/* w = Remove (w); */
return OM_MSG_RET_ERROR;
}
else
{
SetObjectExtra (w, gvp, CleanupGCFilterForm);
gvp->graphtype = GRAPH_FILTER;
gvp->window = 100;
gvp->type = NA_FILTER_GC;
gvp->entityID = ompcp->input_entityID;
gvp->itemID = ompcp->input_itemID;
gvp->procID = ompcp->proc->procid;
/* msg stuff */
gvp->userKEY = OMGetNextUserKey ();
if ((omudp = ObjMgrAddUserData (gvp->entityID, gvp->procID,
OMPROC_FILTER, gvp->userKEY)) != NULL)
{
omudp->userdata.ptrvalue = (Pointer) gvp;
omudp->messagefunc = FilterMsgFunc;
/* omudp->messagefunc = NULL; */
}
WatchCursor ();
spp = SeqPortNew (bsp, 0, bsp->length-1, 0, Seq_code_iupacna);
gvp->sgp = FilterSeq (spp, 0, bsp->length-1, NULL, NULL,
&(gvp->window), gvp->type);
SeqPortFree (spp);
if (gvp->sgp == NULL)
{
/* w = Remove (w); */
ArrowCursor ();
return OM_MSG_RET_ERROR;
}
else
{
BioseqPtrToGraphViewForm (gvp->form, gvp->sgp);
}
}
/* put the screen up */
Show (w);
Select (w);
return OM_MSG_RET_DONE;
}
Int2 LIBCALLBACK FilterDustFunc (Pointer data)
{
OMProcControlPtr ompcp;
BioseqPtr bsp;
GraphViewFormPtr gvp;
WindoW w;
OMUserDataPtr omudp;
SeqPortPtr spp;
Int4 exval[4];
ompcp = (OMProcControlPtr) data;
if (ompcp == NULL || ompcp->input_itemtype == 0)
return OM_MSG_RET_ERROR;
switch (ompcp->input_itemtype)
{
case OBJ_BIOSEQ:
bsp = (BioseqPtr) ompcp->input_data;
break;
default:
return OM_MSG_RET_ERROR;
}
if (bsp != NULL)
{
if (!ISA_na (bsp->mol))
return OM_MSG_RET_ERROR;
w = (WindoW) CreateGraphViewForm (-50, -33, "Dust Filter",
bsp, GRAPH_FILTER);
}
else
{
return OM_MSG_RET_ERROR;
}
if ((gvp = (GraphViewFormPtr) GetObjectExtra (w)) == NULL)
{
/* w = Remove (w); */
return OM_MSG_RET_ERROR;
}
else
{
SetObjectExtra (w, gvp, CleanupGCFilterForm);
gvp->graphtype = GRAPH_FILTER;
gvp->window = 64;
exval[0] = 64;
exval[1] = 20;
exval[2] = 4;
exval[3] = 1;
gvp->type = NA_FILTER_DUST;
gvp->entityID = ompcp->input_entityID;
gvp->itemID = ompcp->input_itemID;
gvp->procID = ompcp->proc->procid;
/* msg stuff */
gvp->userKEY = OMGetNextUserKey ();
if ((omudp = ObjMgrAddUserData (gvp->entityID, gvp->procID,
OMPROC_FILTER, gvp->userKEY)) != NULL)
{
omudp->userdata.ptrvalue = (Pointer) gvp;
omudp->messagefunc = FilterMsgFunc;
/* omudp->messagefunc = NULL; */
}
WatchCursor ();
spp = SeqPortNew (bsp, 0, bsp->length-1, 0, Seq_code_ncbi2na);
gvp->sgp = FilterSeq (spp, 0, bsp->length-1, NULL, NULL,
exval, gvp->type);
SeqPortFree (spp);
if (gvp->sgp == NULL)
{
/* w = Remove (w); */
ArrowCursor ();
return OM_MSG_RET_ERROR;
}
else
{
BioseqPtrToGraphViewForm (gvp->form, gvp->sgp);
}
}
/* put the screen up */
Show (w);
Select (w);
return OM_MSG_RET_DONE;
}
Int2 LIBCALLBACK PCCPredictFunc (Pointer data)
{
OMProcControlPtr ompcp;
BioseqPtr bsp = NULL;
SeqFeatPtr sfp = NULL;
WindoW w;
GraphViewFormPtr gvp;
SeqIdPtr psip;
ompcp = (OMProcControlPtr) data;
if (ompcp == NULL || ompcp->input_itemtype == 0)
return OM_MSG_RET_ERROR;
switch (ompcp->input_itemtype)
{
case OBJ_BIOSEQ:
bsp = (BioseqPtr) ompcp->input_data;
if (!ISA_aa (bsp->mol))
return OM_MSG_RET_ERROR;
break;
case OBJ_SEQFEAT:
sfp = (SeqFeatPtr) ompcp->input_data;
break;
default:
return OM_MSG_RET_ERROR;
}
if (bsp != NULL)
{
w = (WindoW) CreateGraphViewForm (-50, -33, "Predict coiled-coil",
bsp, GRAPH_FILTER);
if ((gvp = (GraphViewFormPtr) GetObjectExtra (w)) == NULL)
{
/* w = Remove (w); */
return OM_MSG_RET_ERROR;
}
else
{
gvp->graphtype = GRAPH_FILTER;
gvp->window = 22;
gvp->type = AA_PCC;
gvp->entityID = ompcp->input_entityID;
gvp->itemID = ompcp->input_itemID;
if ((gvp->sgp = PCCProc (bsp, NULL, gvp->window)) == NULL)
{
/* w = Remove (w); */
return OM_MSG_RET_ERROR;
}
else
{
BioseqPtrToGraphViewForm (gvp->form, gvp->sgp);
}
}
}
else if (sfp != NULL)
{
if (sfp->data.choice != SEQFEAT_CDREGION)
return OM_MSG_RET_ERROR;
psip = SeqLocId (sfp->product);
bsp = BioseqFind (psip);
w = (WindoW) CreateGraphViewForm (-50, -33, "Predict coiled-coil",
bsp, GRAPH_FILTER);
if ((gvp = (GraphViewFormPtr) GetObjectExtra (w)) == NULL)
{
/* w = Remove (w); */
return OM_MSG_RET_ERROR;
}
else
{
gvp->graphtype = GRAPH_FILTER;
gvp->window = 22;
gvp->type = AA_PCC;
gvp->entityID = ompcp->input_entityID;
gvp->itemID = ompcp->input_itemID;
if ((gvp->sgp = PCCProc (bsp, NULL, gvp->window)) == NULL)
{
/* w = Remove (w); */
return OM_MSG_RET_ERROR;
}
else
{
BioseqPtrToGraphViewForm (gvp->form, gvp->sgp);
}
}
}
else
{
return OM_MSG_RET_ERROR;
}
Show (w);
Select (w);
return OM_MSG_RET_DONE;
}
Int2 LIBCALLBACK HydrophilicFunc (Pointer data)
{
OMProcControlPtr ompcp;
BioseqPtr bsp = NULL;
SeqFeatPtr sfp = NULL;
WindoW w;
GraphViewFormPtr gvp;
SeqIdPtr psip;
SeqPortPtr spp;
FloatHi scr[24];
Char res[24];
ompcp = (OMProcControlPtr) data;
if (ompcp == NULL || ompcp->input_itemtype == 0)
return OM_MSG_RET_ERROR;
switch (ompcp->input_itemtype)
{
case OBJ_BIOSEQ:
bsp = (BioseqPtr) ompcp->input_data;
if (!ISA_aa (bsp->mol))
return OM_MSG_RET_ERROR;
break;
case OBJ_SEQFEAT:
sfp = (SeqFeatPtr) ompcp->input_data;
break;
default:
return OM_MSG_RET_ERROR;
}
if (bsp != NULL)
{
w = (WindoW) CreateGraphViewForm (-50, -33, "Hopp-Woods-philicity",
bsp, GRAPH_FILTER);
if ((gvp = (GraphViewFormPtr) GetObjectExtra (w)) == NULL)
{
/* w = Remove (w); */
return OM_MSG_RET_ERROR;
}
else
{
gvp->graphtype = GRAPH_FILTER;
if (ReadAAC ("KShopp.flt", scr, res) != 24)
return OM_MSG_RET_ERROR;
gvp->window = 6;
gvp->type = AA_FILTER_COMP_HOPP;
gvp->entityID = ompcp->input_entityID;
gvp->itemID = ompcp->input_itemID;
spp = SeqPortNew (bsp, 0, bsp->length-1, 0, Seq_code_iupacaa);
gvp->sgp = FilterSeq (spp, 0, bsp->length-1, scr, res,
&(gvp->window), gvp->type);
SeqPortFree (spp);
if (gvp->sgp == NULL)
{
/* w = Remove (w); */
return OM_MSG_RET_ERROR;
}
else
{
BioseqPtrToGraphViewForm (gvp->form, gvp->sgp);
}
}
}
else if (sfp != NULL)
{
if (sfp->data.choice != SEQFEAT_CDREGION)
return OM_MSG_RET_ERROR;
psip = SeqLocId (sfp->product);
bsp = BioseqFind (psip);
w = (WindoW) CreateGraphViewForm (-50, -33, "Hopp-Woods-philicity",
bsp, GRAPH_FILTER);
if ((gvp = (GraphViewFormPtr) GetObjectExtra (w)) == NULL)
{
/* w = Remove (w); */
return OM_MSG_RET_ERROR;
}
else
{
gvp->graphtype = GRAPH_FILTER;
if (ReadAAC ("KShopp.flt", scr, res) != 24)
return OM_MSG_RET_ERROR;
gvp->window = 6;
gvp->type = AA_FILTER_COMP_HOPP;
gvp->entityID = ompcp->input_entityID;
gvp->itemID = ompcp->input_itemID;
spp = SeqPortNew (bsp, 0, bsp->length-1, 0, Seq_code_iupacaa);
gvp->sgp = FilterSeq (spp, 0, bsp->length-1, scr, res,
&(gvp->window), gvp->type);
SeqPortFree (spp);
if (gvp->sgp == NULL)
{
/* w = Remove (w); */
return OM_MSG_RET_ERROR;
}
else
{
BioseqPtrToGraphViewForm (gvp->form, gvp->sgp);
}
}
}
else
{
return OM_MSG_RET_ERROR;
}
Show (w);
Select (w);
return OM_MSG_RET_DONE;
}
Int2 LIBCALLBACK HydrophobicFunc (Pointer data)
{
OMProcControlPtr ompcp;
BioseqPtr bsp = NULL;
SeqFeatPtr sfp = NULL;
WindoW w;
GraphViewFormPtr gvp;
SeqIdPtr psip;
SeqPortPtr spp;
FloatHi scr[24];
Char res[24];
ompcp = (OMProcControlPtr) data;
if (ompcp == NULL || ompcp->input_itemtype == 0)
return OM_MSG_RET_ERROR;
switch (ompcp->input_itemtype)
{
case OBJ_BIOSEQ:
bsp = (BioseqPtr) ompcp->input_data;
if (!ISA_aa (bsp->mol))
return OM_MSG_RET_ERROR;
break;
case OBJ_SEQFEAT:
sfp = (SeqFeatPtr) ompcp->input_data;
break;
default:
return OM_MSG_RET_ERROR;
}
if (bsp != NULL)
{
w = (WindoW) CreateGraphViewForm (-50, -33, "Kyte-Doolittle-phobicity",
bsp, GRAPH_FILTER);
if ((gvp = (GraphViewFormPtr) GetObjectExtra (w)) == NULL)
{
/* w = Remove (w); */
return OM_MSG_RET_ERROR;
}
else
{
gvp->graphtype = GRAPH_FILTER;
if (ReadAAC ("KSkyte.flt", scr, res) != 24)
return OM_MSG_RET_ERROR;
gvp->window = 19;
gvp->type = AA_FILTER_COMP_KYTE;
gvp->entityID = ompcp->input_entityID;
gvp->itemID = ompcp->input_itemID;
spp = SeqPortNew (bsp, 0, bsp->length-1, 0, Seq_code_iupacaa);
gvp->sgp = FilterSeq (spp, 0, bsp->length-1, scr, res,
&(gvp->window), gvp->type);
SeqPortFree (spp);
if (gvp->sgp == NULL)
{
/* w = Remove (w); */
return OM_MSG_RET_ERROR;
}
else
{
BioseqPtrToGraphViewForm (gvp->form, gvp->sgp);
}
}
}
else if (sfp != NULL)
{
if (sfp->data.choice != SEQFEAT_CDREGION)
return OM_MSG_RET_ERROR;
psip = SeqLocId (sfp->product);
bsp = BioseqFind (psip);
w = (WindoW) CreateGraphViewForm (-50, -33, "Kyte-Doolittle-phobicity",
bsp, GRAPH_FILTER);
if ((gvp = (GraphViewFormPtr) GetObjectExtra (w)) == NULL)
{
/* w = Remove (w); */
return OM_MSG_RET_ERROR;
}
else
{
gvp->graphtype = GRAPH_FILTER;
if (ReadAAC ("KSkyte.flt", scr, res) != 24)
return OM_MSG_RET_ERROR;
gvp->window = 19;
gvp->type = AA_FILTER_COMP_KYTE;
gvp->entityID = ompcp->input_entityID;
gvp->itemID = ompcp->input_itemID;
spp = SeqPortNew (bsp, 0, bsp->length-1, 0, Seq_code_iupacaa);
gvp->sgp = FilterSeq (spp, 0, bsp->length-1, scr, res,
&(gvp->window), gvp->type);
SeqPortFree (spp);
if (gvp->sgp == NULL)
{
/* w = Remove (w); */
return OM_MSG_RET_ERROR;
}
else
{
BioseqPtrToGraphViewForm (gvp->form, gvp->sgp);
}
}
}
else
{
return OM_MSG_RET_ERROR;
}
Show (w);
Select (w);
return OM_MSG_RET_DONE;
}
/*
Int2 LIBCALLBACK SeqAnalFunc (Pointer data)
{
OMProcControlPtr ompcp;
BioseqPtr bsp = NULL;
SeqFeatPtr sfp = NULL;
WindoW w;
SeqAnalFormPtr sqap;
SeqIdPtr psip;
ompcp = (OMProcControlPtr) data;
if (ompcp == NULL || ompcp->input_itemtype == 0)
return OM_MSG_RET_ERROR;
switch (ompcp->input_itemtype)
{
case OBJ_BIOSEQ:
bsp = (BioseqPtr) ompcp->input_data;
break;
case OBJ_SEQFEAT:
sfp = (SeqFeatPtr) ompcp->input_data;
break;
default:
return OM_MSG_RET_ERROR;
}
if (sfp != NULL)
{
if (sfp->data.choice != SEQFEAT_CDREGION)
return OM_MSG_RET_ERROR;
if ((psip = SeqLocId (sfp->product)) == NULL)
return OM_MSG_RET_ERROR;
if ((bsp = BioseqFind (psip)) == NULL)
return OM_MSG_RET_ERROR;
}
if (bsp != NULL)
{
w = (WindoW) CreateSeqAnalForm (-50, -33, "Sequence Analysis", bsp);
if ((sqap = (SeqAnalFormPtr) GetObjectExtra (w)) == NULL)
{
return OM_MSG_RET_ERROR;
}
else
{
if (sqap == NULL)
{
return OM_MSG_RET_ERROR;
}
else
{
BioseqPtrToSeqAnalForm (sqap->form, bsp);
}
}
}
else
{
return OM_MSG_RET_ERROR;
}
Show (w);
Select (w);
return OM_MSG_RET_DONE;
}
*/
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