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MODULE a2ferr
$$ DATE, 1
$^ IllegalDate, 1, SEV_WARNING
Date not in dd-mmm-yyy format
$^ Create_after_update, 2, SEV_WARNING
Standard create date after update date.
$$ SEGMENT, 2
$^ LocalSegEntry, 1, SEV_WARNING
The Segmented set (GenBank) that is declared has some
local members. That is, if there 6 members declared,
The set might only have:
1 of 6,
2 of 6,
4 of 6,
5 of 6 and
6 of 6, and thus be missing 3 of 6.
Another possible problem is there could be a line:
"3 of 5", instad of "3 of 6"
$^ MoreThan1000Segs, 2, SEV_INFO
asn2ff is not equipped, as of 8/94, to handle more than 1000 segments.
$$ ACCESSION, 3
$^ BadAccessNum, 1, SEV_ERROR
Accession must be upper case letter followed by 5 digits.
$^ NoAccessNum, 2, SEV_ERROR
No accession number could be found for this entry. The line number
given is only approximate.
$$ LOCUS, 4
$^ ChangedLocusName, 1, SEV_ERROR
???Change this later on.
For GenBank in a segmented set, it is an error if the segment number
can not be found at the end of the LOCUS name. So a LOCUS name
in SEGMENT 2 of 10 must end in 02, as ABCD02.
$^ BadLocusName, 2, SEV_ERROR
There are multiple possible ways to get this error message.
In all formats, this identifier must have either digits or
uppercase letters.
For Swiss-Prot, the rules are more complicated:
Locus name consists of up to 10 uppercase alphanumeric characters
rule: X_Y format
X is a mnemonic code, up to 4 alphanumeric characters to represent
the protein name.
Y is a mnemonic species identification code of at most 5
alphanumeric characters to representing the biological source of
the protein
$^ LocusNameCollision, 3, SEV_WARNING
The Locus name in this entry conflicts with anothe name in the database.
$^ NoLocusName, 8, SEV_ERROR
No token after 'LOCUS' found in GenBank format.
$$ REFERENCE, 5
$^ NoPageNumbering, 1, SEV_WARNING
$^ IllegalPageRange, 2, SEV_WARNING
There are many classes of problems that can give this error message, some
of which are really warnings to have a human take a closer look:
Total pages more than .... means that the total number in the
article is greater than normal. This
is usually caused by a typographical error.
Page number may invert . . . it looks like the first page is greater
that the last page.
First-page contains . . . Although this is possible in the
non-digit character bibliographic world, it is often
or last-page caused by an error.
$^ YearEquZero, 3, SEV_WARNING
$^ IllegalDate, 4, SEV_WARNING
$^ Patent, 5, SEV_WARNING
$^ Journal, 6, SEV_WARNING
$^ Thesis, 7, SEV_WARNING
$^ Book, 8, SEV_WARNING
$^ DirectSubmission, 9, SEV_WARNING
$^ Illegalreference, 10, SEV_ERROR
$^ NoAuthorName, 11, SEV_ERROR
$^ NoJournalName, 12, SEV_ERROR
$^ No_references, 13, SEV_ERROR
$^ NoDateOnRef, 14, SEV_ERROR
$^ DirSubInCitGen, 15, SEV_INFO
$^ MuidZeroOnly, 16, SEV_WARNING
$^ VolHasSuppl, 17, SEV_INFO
$^ ParanInSupp, 18, SEV_INFO
$^ NoValidRefs, 19, SEV_WARNING
$$ FEATURE, 6
$^ UnknownFeatureKey, 1, SEV_WARNING
$^ non_pseudo, 2, SEV_INFO
$^ Bad_location, 3, SEV_INFO
$^ GcodeAndTTableClash, 4, SEV_WARNING
Two conflicting translation values: one in Cdregion.code and one as a qualifier.
$^ NoQualOnMiscFeat, 5, SEV_WARNING
$^ CodeBreakLoc, 6, SEV_WARNING
$^ Duplicated, 7, SEV_WARNING
$^ IdenticalGeneName, 8, SEV_WARNING
$^ NULLGeneLocus, 9, SEV_WARNING
$^ Dropped, 10, SEV_ERROR
$$ ENTRY, 7
$^ Partial_peptide, 1, SEV_INFO
$^ No_valid_ref, 2, SEV_ERROR
$^ No_source_line, 3, SEV_WARNING
$^ OriginTooLong, 4, SEV_WARNING
$^ DroppedFromFlatfile, 5, SEV_ERROR
$$ GI, 8
$^ No_GI_Number, 1, SEV_WARNING
No GI number was found.
$$ PRINT, 9
$^ NullString, 1, SEV_WARNING
|
