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|
# -*- makefile -*- for demo programs
#
# $Id: makedemo.unx,v 6.94 2008/07/29 19:42:43 ucko Exp $
#
# Sun with unbundled ANSI compiler [ make CC=acc ]
# Sun with Gnu C [ make CC=gcc ]
# Sun with Solaris 2.x OS [ make CC="cc -Xa" OTHERLIBS="-lthread -lm" ]
# Silicon Graphics [ make OTHERLIBS="-lm -lPW -lsun" ]
# IBM 3090 with AIX [ make ]
# ULTRIX [ make ]
# Apple AUX [ make SHELL=\usr\bin ]
# NeXt [ make CFLAGS1="-c -ansi" ]
# DEC Alpha under OSF/1 [ make CC=cc ]
# BeOS [ make OTHERLIBS="" ]
#
# Subsequent makes should make ... nocopy instead of make ... all
# to avoid recopying the include files
#
# To Make the Motif version of demos add:
# VIBLIBS="-lXm -lXmu -lXt -lX11" LIB4=-lvibrant VIBFLAG="-I/am/Motif/include -DWIN_MOTIF"
# to the argument list. Substitute the path to your Motif includes for
# /am/Motif/include.
#
# Motif versions on Solaris 2.x are more complicated because of changes to
# the socket I/O. You have explicitly include them. Try:
#
# make -f makedemo.unx CC="cc -Xa"
# VIBLIBS="-L/netopt/X11R5/lib -L/netopt/Motif1.2.2/lib -R/netopt/X11R5/lib:/netopt/Motif1.2.2.lib -lXm -lXmu -lXt -lX11 -lsocket -lnsl -lgen"
# LIB4=-lvibrant
# VIBFLAG="-I/netopt/X11R5/include -I/netopt/Motif1.2.2/include -DWIN_MOTIF"
#
# The build for RedHat Linux 2.XX with X11R6 requires:
# CC="gcc -ansi"
# VIBLIBS="-L/usr/X11R6/lib -lXm -lXpm -lXmu -lXp -lXt -lX11 -lXext"
#
# NOTE: It is now possible to build using shared libraries, which
# consumes significantly less disk space. To date, this has only
# been tested using Solaris. To use shared libraries, try:
# make ... NCBI_LINKINGLIBDIR=../shlib
# NCBI_OTHERLINKOPTIONS=-R`pwd`/../shlib
#
# default flags for compiling and loading
SUFFIXLCL = $(LCL)
CFLAGS1 = -c -O
LDFLAGS1 = -O
CC = cc
RAN = ls -l
OTHERLIBS = -lm
THREAD_OTHERLIBS = -lthread
THREAD_OTHERLIBS =
THREAD_OBJ = ncbithr.o
THREAD_OBJ =
VIBLIBS =
VIBFLAG =
VIB =
LIBCOPY = cp -p
SRCCOPY = ./ln-if-absent
BINCOPY = cp -p
SUFFIXENV = unx
ASNDIR = asnstat
LIB1 = -lncbi
LIB2 = -lncbiobj
LIB3 = -lncbicdr
LIB4 = -lvibrant
LIB4 =
LIB5 = -lncbiacc
LIB20 = -lncbidesk
LIB20 =
LIB22 = -lncbimmdb
LIB23 = -lncbitool
LIBCOMPADJ = -lblastcompadj
LIB50 = -lregexp
LIB60 = -lblast
LIB61 = -lblastapi
NCBI_INCDIR = ../include
NCBI_LIBDIR = ../lib
NCBI_LINKINGLIBDIR = $(NCBI_LIBDIR)
# A kludge which tells the linker not to try to use shared libraries
# when linking programs which use main() instead of Nlm_Main()
USES_MAIN_KLUDGE = -L$(NCBI_LIBDIR)
NCBI_OTHERLINKOPTIONS =
CFLAGS = $(CFLAGS1) -I$(NCBI_INCDIR) $(VIBFLAG)
LDFLAGS = $(LDFLAGS1) -I$(NCBI_INCDIR) $(NCBI_OTHERLINKOPTIONS) -L$(NCBI_LINKINGLIBDIR) $(VIBFLAG)
ENTREZLIBS = $(LIB5) $(LIB3)
##
## some things to make
##
# sources needed for versions of demo programs
EXE1 = testcore makeset \
getmesh indexpub getpub testobj seqtest \
dosimple asn2ff checksub asndhuff \
entrcmd errhdr cdscan findspl \
ncbisort fa2htgs fastacmd formatdb formatrpsdb \
blastall .WAIT blastpgp testval seedtop \
makemat copymat impala \
megablast vecscreen gil2bin blastclust rpsblast \
asn2xml debruijn asn2idx sortbyquote subfuse \
test_regexp demo_regexp demo_regexp_grep
SRC1 = testcore.c makeset.c \
getmesh.c indexpub.c getpub.c testobj.c seqtest.c dosimple.c asn2ff.c \
checksub.c asndhuff.c \
entrcmd.c errhdr.c cdscan.c findspl.c \
ncbisort.c fa2htgs.c fastacmd.c formatdb.c formatrpsdb.c \
blast_driver.c blastall.c blastpgp.c testval.c seedtop.c \
makemat.c copymat.c profiles.c \
megablast.c vecscreen.c gil2bin.c blastclust.c rpsblast.c \
asn2xml.c debruijn.c asn2idx.c sortbyquote.c subfuse.c \
pcretest.c pcredemo.c pcregrep.c
INTERNAL = testgen
## All things to make
##
all : ln-if-absent copy .WAIT nocopy
ln-if-absent: ../make/ln-if-absent
rm -f ln-if-absent
ln -s ../make/ln-if-absent .
nocopy : sources $(EXE1) $(VIB)
sources : $(SRC1)
internal: $(INTERNAL)
## To clean out the directory without removing make
##
clean :
- rm -f *.[acho]
.NO_PARALLEL: copy
.WAIT:
echo Waiting...go
## Implicit actions
##
.c.o :
$(CC) $(CFLAGS) $<
## get all the source files
##
$(SRC1) : copy
copy :
$(SRCCOPY) ../demo/*.* .
$(SRCCOPY) ../regexp/test/*.* .
$(SRCCOPY) ../regexp/demo/*.* .
-$(SRCCOPY) ../internal/*.* .
-chmod -R ug+rw,o+r .
## make applications
##
# testcore
testcore : testcore.c
$(CC) -o testcore $(LDFLAGS) testcore.c $(LIB4) $(LIB1) $(VIBLIBS) $(OTHERLIBS)
# getmesh
getmesh : getmesh.c
$(CC) -o getmesh $(LDFLAGS) getmesh.c $(LIB1)
# indexpub
indexpub : indexpub.c
$(CC) -o indexpub $(LDFLAGS) indexpub.c $(LIB1)
# makeset
makeset : makeset.c
$(CC) -o makeset $(LDFLAGS) makeset.c $(LIB1)
# getpub
getpub : getpub.c
$(CC) -o getpub $(LDFLAGS) getpub.c $(LIB1)
# testobj
testobj : testobj.c
$(CC) -o testobj $(LDFLAGS) testobj.c $(LIB4) $(LIB2) $(LIB1) $(VIBLIBS) $(OTHERLIBS)
# dosimple
dosimple : dosimple.c
$(CC) -o dosimple $(LDFLAGS) dosimple.c $(LIB4) $(LIB2) $(LIB1) $(VIBLIBS) $(OTHERLIBS)
# seqtest
seqtest : seqtest.c
$(CC) -o seqtest $(LDFLAGS) seqtest.c $(LIB4) $(LIB2) $(LIB1) $(VIBLIBS) $(OTHERLIBS)
# checksub
checksub : checksub.c
$(CC) -o checksub $(LDFLAGS) checksub.c $(LIB2) $(LIB1)
# asn2ff
asn2ff : asn2ff.c
$(CC) -o asn2ff $(LDFLAGS) asn2ff.c $(LIB2) $(LIB1)
# fa2htgs
fa2htgs : fa2htgs.c
$(CC) -o fa2htgs $(LDFLAGS) fa2htgs.c $(LIB2) $(LIB1)
# cdscan
cdscan : cdscan.c
$(CC) -o cdscan $(LDFLAGS) cdscan.c $(LIB4) $(ENTREZLIBS) $(LIB2) $(LIB1) $(VIBLIBS) $(OTHERLIBS)
# findspl
findspl : findspl.c
$(CC) -o findspl $(LDFLAGS) findspl.c $(LIB5) $(LIB2) $(LIB1)
# errhdr
errhdr : errhdr.c
$(CC) -o errhdr $(LDFLAGS) errhdr.c $(LIB1)
# asndhuff
asndhuff : asndhuff.c
$(CC) -o asndhuff $(LDFLAGS) asndhuff.c $(LIB3) $(LIB2) $(LIB1)
# entrcmd
entrcmd : entrcmd.c
$(CC) -o entrcmd $(LDFLAGS) entrcmd.c $(ENTREZLIBS) $(LIB2) $(LIB1) $(OTHERLIBS)
# ncbisort
ncbisort : sortcmd.c
$(CC) -o ncbisort $(LDFLAGS) sortcmd.c $(LIB23) $(LIBCOMPADJ) \
$(LIB1) $(OTHERLIBS)
# testval
testval : testval.c
$(CC) -o testval $(LDFLAGS) testval.c $(LIB2) $(LIB1) $(OTHERLIBS)
# fastacmd
fastacmd : fastacmd.c
$(CC) -o fastacmd $(LDFLAGS) fastacmd.c $(LIB23) $(LIB1)
# formatdb
formatdb : formatdb.c
$(CC) -o formatdb $(LDFLAGS) formatdb.c $(LIB23) $(LIB2) $(LIB1)
# formatrpsdb
formatrpsdb : formatrpsdb.c
$(CC) -o formatrpsdb $(LDFLAGS) formatrpsdb.c $(LIB23) \
$(LIB60) $(LIB2) $(LIB1)
# blast (reincarnation of blastall from algo/blast sources)
blast : blast_driver.c
$(CC) -o blast $(LDFLAGS) blast_driver.c $(THREAD_OBJ) $(LIB61) \
$(LIB60) $(LIB23) $(LIB2) $(LIB1) $(THREAD_OTHERLIBS)
debruijn : debruijn.c
$(CC) -o debruijn $(LDFLAGS) debruijn.c $(LIB60) $(LIB1)
# blastall
blastall : blastall.c $(THREAD_OBJ)
$(CC) -o blastall $(LDFLAGS) blastall.c $(THREAD_OBJ) $(LIB61) \
$(LIB60) $(LIB23) $(LIB2) $(LIB1) $(THREAD_OTHERLIBS)
# blastall_old (version of blastall that does not link in new algo/blast libs).
blastall_old : blastall.c $(THREAD_OBJ)
$(CC) -o blastall_old $(LDFLAGS) -DBLASTALL_TOOLS_ONLY blastall.c \
$(THREAD_OBJ) $(LIB23) $(LIB2) $(LIB1) $(THREAD_OTHERLIBS)
# blastpgp
blastpgp : blastpgp.c $(THREAD_OBJ)
$(CC) -o blastpgp $(LDFLAGS) blastpgp.c $(THREAD_OBJ) $(LIB23) \
$(LIB2) $(LIB1) $(THREAD_OTHERLIBS)
# seedtop
seedtop : seedtop.c $(THREAD_OBJ)
$(CC) -o seedtop $(LDFLAGS) seedtop.c $(THREAD_OBJ) $(LIB23) \
$(LIB2) $(LIB1) $(THREAD_OTHERLIBS)
# makemat
makemat : makemat.c $(THREAD_OBJ)
$(CC) -o makemat $(LDFLAGS) makemat.c $(THREAD_OBJ) $(LIB23) \
$(LIB2) $(LIB1) $(THREAD_OTHERLIBS)
# copymat
copymat : copymat.c $(THREAD_OBJ)
$(CC) -o copymat $(LDFLAGS) copymat.c $(THREAD_OBJ) $(LIB60) $(LIB23) \
$(LIB1) $(THREAD_OTHERLIBS)
# impala
impala : profiles.c $(THREAD_OBJ)
$(CC) -o impala $(LDFLAGS) profiles.c $(THREAD_OBJ) $(LIB23) \
$(LIB2) $(LIB1) $(OTHERLIBS) $(THREAD_OTHERLIBS)
# testgen
testgen : testgen.c
$(CC) -o testgen $(LDFLAGS) testgen.c $(LIB1) $(OTHERLIBS)
#testmem
testmem : testmem.c
$(CC) -o testmem $(LDFLAGS) testmem.c $(LIB2) $(LIB1) $(OTHERLIBS)
#packfilt
packfilt : packfilt.c
$(CC) -o packfilt $(LDFLAGS) packfilt.c $(LIB2) $(LIB1) $(OTHERLIBS)
# megablast
megablast : megablast.c $(THREAD_OBJ)
$(CC) -o megablast $(LDFLAGS) megablast.c $(THREAD_OBJ) $(LIB61) \
$(LIB60) $(LIB23) $(LIB2) $(LIB1) $(THREAD_OTHERLIBS)
# vecscreen
vecscreen : vecscreen.c $(THREAD_OBJ)
$(CC) -o vecscreen $(LDFLAGS) vecscreen.c $(THREAD_OBJ) $(LIB23) \
$(LIB2) $(LIB1) $(THREAD_OTHERLIBS)
# gil2bin
gil2bin : gil2bin.c
$(CC) -o gil2bin $(LDFLAGS) gil2bin.c $(LIB23) $(LIB1)
# asn2idx
asn2idx : asn2idx.c
$(CC) -o asn2idx $(LDFLAGS) asn2idx.c $(LIB2) $(LIB1)
# sortbyquote
sortbyquote : sortbyquote.c
$(CC) -o sortbyquote $(LDFLAGS) sortbyquote.c $(LIB1)
# subfuse
subfuse : subfuse.c
$(CC) -o subfuse $(LDFLAGS) subfuse.c $(LIB2) $(LIB1)
# blastclust
blastclust : blastclust.c $(THREAD_OBJ)
$(CC) -o blastclust $(LDFLAGS) blastclust.c $(THREAD_OBJ) $(LIB23) \
$(LIB2) $(LIB1) $(THREAD_OTHERLIBS)
# rpsblast
rpsblast : rpsblast.c $(THREAD_OBJ)
$(CC) -o rpsblast $(LDFLAGS) rpsblast.c $(THREAD_OBJ) $(LIB61) \
$(LIB60) $(LIB23) $(LIB2) $(LIB1) $(THREAD_OTHERLIBS)
# asn2xml
asn2xml : asn2xml.c $(THREAD_OBJ)
$(CC) -o asn2xml $(LDFLAGS) asn2xml.c $(LIB2) $(LIB1)
# regexp demos
test_regexp : pcretest.c
$(CC) -o test_regexp $(LDFLAGS) pcretest.c $(LIB50)
demo_regexp : pcretest.c
$(CC) -o demo_regexp $(LDFLAGS) pcredemo.c $(LIB50)
demo_regexp_grep : pcretest.c
$(CC) -o demo_regexp_grep $(LDFLAGS) pcregrep.c $(LIB50)
|
