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<p class="GUTTER1"><a href="casp3/index.shtml" class="GUTTER1"><B>CASP3</B></a></p>
<p class="GUTTER2">1998 Structure prediction experiment</p>
<p class="GUTTER1"><a href="http://www.ncbi.nlm.nih.gov/Structure/RESEARCH/casp2/index.html" class="GUTTER1"><B>CASP2</B></a></p>
<p class="GUTTER2">1996 Structure prediction experiment</p>
<p class="GUTTER1"><a href="http://www.ncbi.nlm.nih.gov/Structure/RESEARCH/threading.shtml" class="GUTTER1"><B>Threading</B></a></p>
<p class="GUTTER2">Protein Fold Recognition</p>
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Structure Group Research</td>
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<p class="TEXT">
<strong>Senior Investigator: Stephen H. Bryant</strong><p>
<DL>
<DT>Affiliation:
<DD>Computational Biology Branch,<br>
National Center for Biotechnology Information (NCBI),
National Library of Medicine (NLM).<br>
Contact: Dr. S. H. Bryant, Bldg. 38A, Room 5S504,
NLM, NIH, 8600 Rockville Pike, Bethesda, MD 20894.<br>
Tel: (301) 435-7792<br>
Fax: (301) 480-9241<br>
email <a href="mailto:bryant@ncbi.nlm.nih.gov">bryant@ncbi.nlm.nih.gov</a>
</dl>
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<strong>Comparative macromolecular 3D-structure analysis</strong><p>
<a href="/Structure/CN3D/cn3d.shtml">Cn3D</a>: Visualization of 3D structures
and alignments<p>
<a href="/Structure/MMDB/mmdb.shtml">MMDB</a>:
"Computer-friendly" structure database<p>
<a href="/Structure/RESEARCH/threading.shtml">Threading</a>:
Algorithms for protein fold recognition<p>
<a href="/Structure/VAST/vast.shtml">VAST</a>:
Protein structure-structure comparisons<p>
<a href="/Structure/cdd/cdd.shtml">CDD</a>:
A Conserved Domain Database<p>
<a href="http://www.ncbi.nlm.nih.gov:80/entrez/query.fcgi?db=Structure">Entrez3D</a>:
WWW-retrieval tools for all of the above<p>
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<p class="SMALL1"><strong>Selected Online Publications:</strong></p>
<p class="SMALL1">Wang Y, Anderson JB, Chen J, Geer LY, He S, Hurwitz DI, Liebert CA,
Madej T, Marchler GH, Marchler-Bauer A, Panchenko AR, Shoemaker BA, Song JS, Thiessen PA,
Yamashita RA, Bryant SH.
<a href="http://nar.oupjournals.org/cgi/content/full/30/1/249?ijkey=iGxcC9hHh9esk&keytype=ref&siteid=nar">MMDB: Entrez's 3D-structure database.</a>
Nucleic Acids Res 2002; 30:249-252.
</p>
<p class="SMALL1">Marchler-Bauer A, Panchenko AR,
Shoemaker BA, Thiessen PA, Geer LY, Bryant SH.
<a href="http://nar.oupjournals.org/cgi/content/full/30/1/281?ijkey=cZeqTjmJjx4xQ&keytype=ref&siteid=nar">CDD: a database of conserved domain alignments with
links to domain three-dimensional structure.</a>
Nucleic Acids Res 2002; 30:281-283.
</p>
<p class="SMALL1">Wang Y, Addess KJ, Geer L, Madej T, Marchler-Bauer A, Zimmerman D, Bryant SH.
<a href="/Structure/MMDB/nar/gkd066_gml.html">MMDB: 3D structure data in Entrez.</a>
Nucleic Acids Res 2000; 28:243-245. </p>
<p class="SMALL1">Panchenko A, Marchler-Bauer A, Bryant SH.
<a href="/Structure/RESEARCH/casp3/pap.html">Threading with Explicit Models for Evolutionary Conservation of Structure and Sequence.</a>
Proteins Suppl 1999; 3:133-140.</p>
<p class="SMALL1">
Marchler-Bauer A, Addess KJ, Chappey C, Geer L, Madej T, Matsuo Y, Wang Y, Bryant SH.
<a href="/Structure/MMDB/nar/gkc102_gml.html">MMDB: Entrez's 3D structure database.</a>
Nucleic Acids Res 1999; 27:240-243.</p>
<p class="SMALL1">
Hogue CWV. <a href="cn3dtibs.html">
Cn3D: a new generation of three-dimensional molecular structure viewer.</a>
Trends Biochem Sci 1997; 22:314-316.</p>
<p class="SMALL1">
Marchler-Bauer A, Bryant SH.
<a href="casptibs.html">A measure of success in fold recognition.</a>
Trends Biochem Sci 1997; 22:236-240.</p>
<p class="SMALL1">
Hogue CWV, Ohkawa H, Bryant SH.
<a href="chtibs.html">
A dynamic look at structures: WWW-Entrez and the molecular modeling database.</a>
Trends Biochem. Sci 1996; 21:226-229.</p>
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see also:</FONT></TD></TR>
</TABLE>
<p class="TEXT">
<table border="0" width="125" bgcolor="#ffffcc" cellspacing="0" cellpadding="3" class="TEXT">
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<td width="125" bgcolor="#ffffcc" class="SMALL1">
1995: Successful
<a href="http://www.ncbi.nlm.nih.gov/Structure/RESEARCH/leptin.html">Leptin structure prediction</a>
</td>
</tr>
</table>
<p class="SMALL1"><strong>Personnel</strong> (Click on link to send E-mail):</P>
<p class="SMALL1">
<a href="mailto:madej@ncbi.nlm.nih.gov">Tom Madej</a><br>
<a href="mailto:bauer@ncbi.nlm.nih.gov">Aron Marchler-Bauer</a><br>
<a href="mailto:ywang@ncbi.nlm.nih.gov">Yanli Wang</a><br>
<a href="mailto:panch@ncbi.nlm.nih.gov">Anna Panchenko</a><br>
<a href="about:">Lewis Geer</a><br>
<a href="mailto:chenj@ncbi.nlm.nih.gov">Jie Chen</a><br>
<a href="mailto:thiessen@ncbi.nlm.nih.gov">Paul Thiessen</a><br>
<a href="mailto:hurwitz@ncbi.nlm.nih.gov">David Hurwitz</a><br>
<a href="mailto:shoemake@ncbi.nlm.nih.gov">Ben Shoemaker</a><br>
<a href="mailto:he@ncbi.nlm.nih.gov">Siqian He</a><br>
<a href="mailto:sefcovic@ncbi.nlm.nih.gov">Natasha Sefcovic</a><br>
<a href="mailto:anderson@ncbi.nlm.nih.gov">John Anderson</a><br>
<a href="mailto:ryamashi@ncbi.nlm.nih.gov">Roxanne Yamashita</a><br>
<a href="mailto:liebert@ncbi.nlm.nih.gov">Cynthia Liebert</a><br>
<a href="mailto:song@ncbi.nlm.nih.gov">James Song</a><br>
<a href="mailto:marchler@ncbi.nlm.nih.gov">Gabriele Marchler</a><br>
<a href="mailto:kann@ncbi.nlm.nih.gov">Maricel Kann</a><br>
<a href="mailto:tsang@ncbi.nlm.nih.gov">Hsin-Yi Tsang</a><br>
<a href="mailto:scott@ncbi.nlm.nih.gov">Carol DeWeese-Scott</a><br>
<a href="mailto:lanczyck@ncbi.nlm.nih.gov">Christopher Lanczycki</a><br>
<a href="mailto:jjackson@ncbi.nlm.nih.gov">John Jackson</a><br>
<a href="mailto:cliu@ncbi.nlm.nih.gov">Chunlei Liu</a><br>
<a href="mailto:yin@ncbi.nlm.nih.gov">Jodie Yin</a><br>
<a href="mailto:simonyan@ncbi.nlm.nih.gov">Vahan Simonyan</a>
<a href="mailto:thompson@ncbi.nlm.nih.gov">Kenneth Evan Thompson</a><br>
<a href="mailto:mxu@ncbi.nlm.nih.gov">Ming Xu</a><br>
<a href="mailto:cherukur@ncbi.nlm.nih.gov">Praveen Cherukuri</a><br>
<a href="mailto:bolton@ncbi.nlm.nih.gov">Evan Bolton</a><br>
<a href="mailto:ihlenfel@ncbi.nlm.nih.gov">Wolf-Dietrich Ihlenfeldt</a><br>
<a href="mailto:jiazhang@ncbi.nlm.nih.gov">Jeff Zhang</a><br>
<a href="mailto:jahe@ncbi.nlm.nih.gov">Jane He</a><br>
<a href="mailto:shlu@ncbi.nlm.nih.gov">Shennan Lu</a><br>
<a href="mailto:jxiao@ncbi.nlm.nih.gov">Jewen Xiao</a><br>
<a href="mailto:dzhang@ncbi.nlm.nih.gov">Dachuan Zhang</a><br>
<a href="mailto:gwadz@ncbi.nlm.nih.gov">Marc Gwadz</a><br>
<a href="mailto:mullokan@ncbi.nlm.nih.gov">Mikhail Mullokandov</a><br>
<a href="mailto:fulu@ncbi.nlm.nih.gov">Fu Lu</a><br>
<a href="mailto:chakraba@ncbi.nlm.nih.gov">Saikat Chakrabarti</a><br>
<a href="mailto:zke@ncbi.nlm.nih.gov">Zhaoxi Ke</a><br>
<a href="mailto:hao@ncbi.nlm.nih.gov">Luning Hao</a><br>
<a href="mailto:derbyshi@ncbi.nlm.nih.gov">Myra Derbyshire</a><br>
<a href="mailto:ngau@ncbi.nlm.nih.gov">Abby Ngau</a>
<img src="http://www.ncbi.nlm.nih.gov/Structure/GIFS/new.gif" BORDER=0 ALT="NEW!"><br>
<a href="mailto:gonzalen@ncbi.nlm.nih.gov">Noreen Gonzales</a>
<img src="http://www.ncbi.nlm.nih.gov/Structure/GIFS/new.gif" BORDER=0 ALT="NEW!">
</p>
<p class="SMALL1"><strong>Structure Group Alumni</strong> <a href="http://www.ncbi.nlm.nih.gov/Structure/MISC/alumni.html">(addresses)</a>:</p>
<p class="SMALL1">
<a href="mailto:major@IRO.UMontreal.CA">Francois Major</a><br>
<a href="mailto:gibrat@proline.jouy.inra.fr">Jean-Francois Gibrat</a><br>
<a href="mailto:hitomi.ohkawa@roche.com">Hitomi Ohkawa</a><br>
<a href="mailto:hogue@mshri.on.ca">Christopher Hogue</a><br>
<a href="mailto:qiuwei_xu@merck.com">Qiuwei Xu</a><br>
<a href="mailto:matsuo@jota.riken.go.jp">Yo Matsuo</a><br>
<a href="mailto:WEI.DING@spcorp.com">Wei Ding</a><br>
<a href="mailto:addess@sdsc.edu">Ken Addess</a><br>
<a href="mailto:ariel@iibr.gov.il">Naomi Ariel</a></br>
<a href="mailto:dzimmerman@nwsti.com">Diane Zimmerman</a><br>
<a href="mailto:ann2@georgetown.edu">Anastasia Nikolskaya</a><br>
<a href="mailto:rm285@georgetown.edu">Raja Mazumder</a><br>
<a href="about:">Natalie Fedorova</a><br>
<a href="about:">Aviva Jacobs</a><br>
<a href="mailto:sv67@georgetown.edu">Sona Vasudevan</a><br>
<a href="about:">B. Sridhar Rao</a>
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