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.TH NPS2GPS 1 2016-09-01 "NCBI Tools User's Manual"
.SH NAME
nps2gps \- convert nucleotide-protein sets to ASN.1 genomic product sets
.SH SYNOPSIS
.B nps2gps
[\|\fB\-\fP\|]
[\|\fB\-B\fP\|]
[\|\fB\-D\fP\|]
[\|\fB\-F\fP\|]
[\|\fB\-G\fP\ \fIstr\fP\|]
[\|\fB\-L\fP\|]
[\|\fB\-N\fP\|]
[\|\fB\-P\fP\|]
[\|\fB\-Q\fP\|]
[\|\fB\-R\fP\|]
[\|\fB\-S\fP\|]
[\|\fB\-T\fP\|]
[\|\fB\-U\fP\|]
[\|\fB\-f\fP\ \fIstr\fP\|]
[\|\fB\-i\fP\ \fIfilename\fP\|]
[\|\fB\-o\fP\ \fIfilename\fP\|]
[\|\fB\-p\fP\ \fIpath\fP\|]
[\|\fB\-r\fP\ \fIpath\fP\|]
[\|\fB\-x\fP\ \fIstr\fP\|]
.SH DESCRIPTION
\fBnps2gps\fP converts NCBI Bioseq-sets from simple nucleotide-protein
sets to full genomic product sets complete with mRNA transcripts,
which it outputs as text ASN.1.
.SH OPTIONS
A summary of options is included below.
.TP
\fB\-\fP
Print usage message
.TP
\fB\-B\fP
NG and NR rRNA
.TP
\fB\-D\fP
RefSeq mRNA Titles
.TP
\fB\-F\fP
Map by Feature ID
.TP
\fB\-G\fP\ \fIstr\fP
General ID database name
.TP
\fB\-L\fP
Lock components in advance
.TP
\fB\-N\fP
Promote Non-coding RNAs
.TP
\fB\-P\fP
mRNA ID from Protein
.TP
\fB\-Q\fP
Special mRNA titles
.TP
\fB\-R\fP
Enable Remote fetching from ID
.TP
\fB\-S\fP
Special ncRNA on preRNA
.TP
\fB\-T\fP
Map by Transcript ID
.TP
\fB\-U\fP
Remove Unnecessary gene cross-references
.TP
\fB\-f\fP\ \fIstr\fP
Substring filter
.TP
\fB\-i\fP\ \fIfilename\fP
Single input file (default = stdin)
.TP
\fB\-o\fP\ \fIfilename\fP
Single output file (default = stdout)
.TP
\fB\-p\fP\ \fIpath\fP
Path to files for batch conversion
.TP
\fB\-r\fP\ \fIpath\fP
Path for results of batch conversion
.TP
\fB\-x\fP\ \fIstr\fP
File selection suffix for batch conversion (default = \fB.ent\fP)
.SH AUTHOR
The National Center for Biotechnology Information.
.SH SEE ALSO
.BR asn2asn (1),
.BR asn2ff (1),
.BR asn2gb (1),
.BR asn2xml (1),
.BR asndhuff (1).
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