1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
|
/*****************************************************************************
*
* checksub.c
* reads a sequenct submission with the object loaders
*
*****************************************************************************/
#include <objsub.h>
#define NUMARGS 3
Args myargs[NUMARGS] = {
{ "Input data", NULL, "Seq-submit", NULL, FALSE, 'i', ARG_DATA_IN, 0.0,0,NULL},
{ "Input data is binary", "F", NULL, NULL, TRUE , 'b', ARG_BOOLEAN, 0.0,0,NULL},
{ "Output data", "stdout", "Seq-submit", NULL, FALSE, 'o', ARG_DATA_OUT, 0.0,0,NULL}};
Int2 Main(void)
{
AsnIoPtr aip, aipout;
AsnTypePtr atp;
static CharPtr intypes[2] = { "r", "rb" };
Int2 intype;
SeqSubmitPtr ssp;
if (! SubmitAsnLoad())
Message(MSG_FATAL, "Unable to load parse trees.");
atp = AsnFind("Seq-submit");
if (atp == NULL)
Message(MSG_FATAL, "Unable to find Seq-submit");
if (! GetArgs("CheckSub 1.0", NUMARGS, myargs))
return 1;
if (myargs[1].intvalue) /* binary input is TRUE */
intype = 1;
else
intype = 0;
if ((aip = AsnIoOpen(myargs[0].strvalue, intypes[intype])) == NULL)
{
Message(MSG_FATAL, "Couldn't open %s", myargs[0].strvalue);
return 1;
}
if ((aipout = AsnIoOpen(myargs[2].strvalue, "w")) == NULL)
{
Message(MSG_ERROR, "Couldn't open %s", myargs[2].strvalue);
return 1;
}
ssp = SeqSubmitAsnRead(aip, NULL);
if (ssp == NULL)
Message(MSG_FATAL, "Couldn't read input file");
AsnIoClose(aip);
if (! SeqSubmitAsnWrite(ssp, aipout, NULL))
Message(MSG_FATAL, "Couldn't write output file");
AsnIoClose(aipout);
SeqSubmitFree(ssp);
return 0;
}
|
