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################################################################################
sub PACKAGE { 'ncbi-vdb' }
sub PACKAGE_TYPE { 'L' }
sub PACKAGE_NAME { 'NCBI-VDB' }
sub PACKAGE_NAMW { 'VDB' }
sub CONFIG_OUT { 'build' }
sub PKG { ( LNG => 'C',
OUT => 'ncbi-outdir',
LOCOUT=> '../../OUTDIR',
PATH => '/usr/local/ncbi/ncbi-vdb',
UPATH => '$HOME/ncbi/ncbi-vdb', ) }
sub DEPENDS { ( { name => 'hdf5' , Include => '/usr/include' , },
{ name => 'magic', Include => '/usr/include' , },
{ name => 'xml2' , Include => '/usr/include/libxml2', } ) }
sub REQ { ( { name => 'ngs-sdk',
aname => 'NGS',
option => 'with-ngs-sdk-prefix',
origin => 'I',
type => 'IDQ',
srcpath => '../ngs/ngs-sdk',
pkgpath => '/usr/local/ngs/ngs-sdk',
usrpath => '$HOME/ngs/ngs-sdk',
bldpath => '$HOME/ncbi-outdir/ngs-sdk',
locbldpath=>'$Bin/../../OUTDIR/ngs-sdk',
include => 'ngs/itf/Refcount.h',
lib => 'libngs-sdk.$SHLX',
},
{ name => 'ngs-java',
aname => 'NGS_JAVA',
option => 'with-ngs-java-prefix',
origin => 'I',
type => 'JO',
pkgpath => '/usr/share/java', # grmpf, why is this ignored after it is changed :-(((
usrpath => '/usr/share/java', # try again with same value
bldpath => '$HOME/ncbi-outdir/ngs-java',
locbldpath=>'$Bin/../../OUTDIR/ngs-java',
lib => 'ngs-java.jar',
},
{ name => 'hdf5',
option => 'with-hdf5-prefix',
origin => 'E',
type => 'LIO',
pkgpath => '/usr',
usrpath => '$HOME',
include => 'hdf5.h',
lib => 'libhdf5.a',
},
{ name => 'xml2',
option => 'with-xml2-prefix',
origin => 'E',
type => 'LIO',
pkgpath => '/usr',
usrpath => '$HOME',
include => 'libxml2/xmlreader.h',
lib => 'libxml2.a',
} ) }
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